BAC Information

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BAC

Clone NameB6Ng01-158J13
Chromosome16 (Build37)
Map Location 74,688,639 - 74,849,847
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo2
Downstream geneLOC665042, D930038D03Rik, Rbm11, Stch, LOC546667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158J13.bB6Ng01-158J13.g
ACCDH952502DH952503
length865996
definitionDH952502|Mus musculus domesticus DNA, BAC clone: B6Ng01-158J13, 5' end.DH952503|Mus musculus domesticus DNA, BAC clone: B6Ng01-158J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,848,987 - 74,849,847)(74,688,639 - 74,689,631)
sequence
gaattcttctccagagctttaaaatgcacaaaagttagcttagcttgtat
cacccacaagcctctttacatagaggaaagatgtgtggactcgaccacta
catgcactcattgaatgcaactgtgactctataaatagccaaagtgtggc
caagtttgttaggttttacaatagttctccagctcagcaaagcgctccaa
tttgctagtggaccacatattactagggaaatattgataaaatcagaagt
caccgagcatatgttttactgaaatgtagaaagcttccagaaccaaattg
aggctatgtgtcattaacaaaataggtttgcaactacatctttcacgtgt
cctttttcatattaatggtgtaaattatgttacatttcatatattcacta
ccgctgattgtgtagttactatataccaagaattatggtaaaaatgattt
acagtgtaagagttatatagacatcacaggatactgtcagatagcaaaaa
gtctactgaccactacaggagaataagcaagaagaacaatcgggtgtcat
ggaaaacatagcactgggatagaggactctcctgatcttcttaaggtgtt
cggatacttcttttatgtaggcaataggaagttatataggacatatatcc
atccatttgaatccccagaatctgttttgataagctggttttgaacagaa
ttccatattggaagtttttgtgtcacactacatagaaaatttgagtactc
tttttctttgtttataaatctcctactttttttttgatatttattcatta
aaagctgatatatatatgtatgtatatatatatatatatatatatatata
tatatgtatatatat
gaattccttttctgatttccttccataataaacaaagatatgacagtaga
gccaaatgaagtctttcttcctcaactcttttgggggattcacggtgttt
cattgcaggaacagaaaccctaactgagccaaacactgaagaagaagtca
tctctttctccacagtctcctcagtatttatttttctgttgtctttacat
atctcacaaaagatgttaatatattgttgttttgatttgtatttttgtga
tgaatcacaatgttgaatagatttttaatagacttggacattggtaaaat
aaagaagagcaaaacaaataaattggttattggagtacaaattgagtgaa
tcatgtgaacacttttagaaacaagctctgcaatgaggtcctatgggcta
ctgaaacctgatttgttgtttttgtttttggtttgttttgctttttgtca
agtgctggtattaaaatattcaccattgcaaaaagccctgaacacacaca
gagatagacacatgtttatttattaatcattcaatttgatgacatctcaa
atgatatattacttccccttcaaaccacatctgcccgccccacccccttc
actctgcccctagaaaaaaaaatgagtgctttaatgagacttcctcggaa
gatgcactataaaacaaaagtattcttgtatctcagttttgtgtaaggta
aaaactactaggttttattttttttttatttttttaggagatattttctt
catttacatttcaaatgctatcccctttcctactttcctctccaaaagcc
ccttatagcttcacccccacctctgctccccgacccactcactcttactt
cctgaccctggcattcccctgttctgggcctataatcttctcagactgaa
agcctctcctccactttgatggccgactaagccattcttctgctacatat
aaacttgagaacacaagcctctggtgaatgagcagttggggaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_74848987_74849847
seq2: B6Ng01-158J13.b_44_908 (reverse)

seq1  ----ATATATATATATATATATATATATATATATATATATATATATATAT  46
          ||||| ||||||||||||||||||||||||||||||||| ||| ||
seq2  ATATATATACATATATATATATATATATATATATATATATATACATACAT  50

seq1  ATATATATCAGCTTTTAATGAATAAATATCAAAAAAAAAGTAGGAGATTT  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATCAGCTTTTAATGAATAAATATCAAAAAAAAAGTAGGAGATTT  100

seq1  ATAAACAAAGAAAAAGAGTACTCAAATTTTCTATGTAGTGTGACACAAAA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAAGAAAAAGAGTACTCAAATTTTCTATGTAGTGTGACACAAAA  150

seq1  ACTTCCAATATGGAATTCTGTTCAAAACCAGCTTATCAAAACAGATTCTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAATATGGAATTCTGTTCAAAACCAGCTTATCAAAACAGATTCTG  200

seq1  GGGATTCAAATGGATGGATATATGTCCTATATAACTTCCTATTGCCTACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCAAATGGATGGATATATGTCCTATATAACTTCCTATTGCCTACA  250

seq1  TAAAAGAAGTATCCGAACACCTTAAGAAGATCAGGAGAGTCCTCTATCCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAGTATCCGAACACCTTAAGAAGATCAGGAGAGTCCTCTATCCC  300

seq1  AGTGCTATGTTTTCCATGACACCCGATTGTTCTTCTTGCTTATTCTCCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTATGTTTTCCATGACACCCGATTGTTCTTCTTGCTTATTCTCCTG  350

seq1  TAGTGGTCAGTAGACTTTTTGCTATCTGACAGTATCCTGTGATGTCTATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTCAGTAGACTTTTTGCTATCTGACAGTATCCTGTGATGTCTATA  400

seq1  TAACTCTTACACTGTAAATCATTTTTACCATAATTCTTGGTATATAGTAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTACACTGTAAATCATTTTTACCATAATTCTTGGTATATAGTAA  450

seq1  CTACACAATCAGCGGTAGTGAATATATGAAATGTAACATAATTTACACCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAATCAGCGGTAGTGAATATATGAAATGTAACATAATTTACACCA  500

seq1  TTAATATGAAAAAGGACACGTGAAAGATGTAGTTGCAAACCTATTTTGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGAAAAAGGACACGTGAAAGATGTAGTTGCAAACCTATTTTGTT  550

seq1  AATGACACATAGCCTCAATTTGGTTCTGGAAGCTTTCTACATTTCAGTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACATAGCCTCAATTTGGTTCTGGAAGCTTTCTACATTTCAGTAA  600

seq1  AACATATGCTCGGTGACTTCTGATTTTATCAATATTTCCCTAGTAATATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGCTCGGTGACTTCTGATTTTATCAATATTTCCCTAGTAATATG  650

seq1  TGGTCCACTAGCAAATTGGAGCGCTTTGCTGAGCTGGAGAACTATTGTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCACTAGCAAATTGGAGCGCTTTGCTGAGCTGGAGAACTATTGTAA  700

seq1  AACCTAACAAACTTGGCCACACTTTGGCTATTTATAGAGTCACAGTTGCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAACAAACTTGGCCACACTTTGGCTATTTATAGAGTCACAGTTGCA  750

seq1  TTCAATGAGTGCATGTAGTGGTCGAGTCCACACATCTTTCCTCTATGTAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGAGTGCATGTAGTGGTCGAGTCCACACATCTTTCCTCTATGTAA  800

seq1  AGAGGCTTGTGGGTGATACAAGCTAAGCTAACTTTTGTGCATTTTAAAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTGTGGGTGATACAAGCTAAGCTAACTTTTGTGCATTTTAAAGC  850

seq1  TCTGGAGAAGAATTC  861
      |||||||||||||||
seq2  TCTGGAGAAGAATTC  865

seq1: chr16_74688639_74689631
seq2: B6Ng01-158J13.g_66_1061

seq1  GAATTCCTTTTCTGATTTCCTTCCATAATAAACAAAGATATGACAGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTCTGATTTCCTTCCATAATAAACAAAGATATGACAGTAGA  50

seq1  GCCAAATGAAGTCTTTCTTCCTCAACTCTTTTGGGGGATTCACGGTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATGAAGTCTTTCTTCCTCAACTCTTTTGGGGGATTCACGGTGTTT  100

seq1  CATTGCAGGAACAGAAACCCTAACTGAGCCAAACACTGAAGAAGAAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAGGAACAGAAACCCTAACTGAGCCAAACACTGAAGAAGAAGTCA  150

seq1  TCTCTTTCTCCACAGTCTCCTCAGTATTTATTTTTCTGTTGTCTTTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTCCACAGTCTCCTCAGTATTTATTTTTCTGTTGTCTTTACAT  200

seq1  ATCTCACAAAAGATGTTAATATATTGTTGTTTTGATTTGTATTTTTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACAAAAGATGTTAATATATTGTTGTTTTGATTTGTATTTTTGTGA  250

seq1  TGAATCACAATGTTGAATAGATTTTTAATAGACTTGGACATTGGTAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCACAATGTTGAATAGATTTTTAATAGACTTGGACATTGGTAAAAT  300

seq1  AAAGAAGAGCAAAACAAATAAATTGGTTATTGGAGTACAAATTGAGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAGCAAAACAAATAAATTGGTTATTGGAGTACAAATTGAGTGAA  350

seq1  TCATGTGAACACTTTTAGAAACAAGCTCTGCAATGAGGTCCTATGGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGAACACTTTTAGAAACAAGCTCTGCAATGAGGTCCTATGGGCTA  400

seq1  CTGAAACCTGATTTGTTGTTTTTGTTTTTGGTTTGTTTTGCTTTTTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCTGATTTGTTGTTTTTGTTTTTGGTTTGTTTTGCTTTTTGTCA  450

seq1  AGTGCTGGTATTAAAATATTCACCATTGCAAAAAGCCCTGAACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGTATTAAAATATTCACCATTGCAAAAAGCCCTGAACACACACA  500

seq1  GAGATAGACACATGTTTATTTATTAATCATTCAATTTGATGACATCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGACACATGTTTATTTATTAATCATTCAATTTGATGACATCTCAA  550

seq1  ATGATATATTACTTCCCCTTCAAACCACATCTGCCCGCCCCACCCCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATATTACTTCCCCTTCAAACCACATCTGCCCGCCCCACCCCCTTC  600

seq1  ACTCTGCCCCTAGAAAAAAAAATGAGTGCTTTAATGAGACTTCCTCGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCCCCTAGAAAAAAAAATGAGTGCTTTAATGAGACTTCCTCGGAA  650

seq1  GATGCACTATAAAACAAAAGTATTCTTGTATCTCAGTTTTGTGTAAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACTATAAAACAAAAGTATTCTTGTATCTCAGTTTTGTGTAAGGTA  700

seq1  AAAACTACTAGGTTTTATTTTTTTTTTATTTTTTTAGTAGATATTTTCTT  750
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAACTACTAGGTTTTATTTTTTTTTTATTTTTTTAGGAGATATTTTCTT  750

seq1  CATTTACATTTCAAATGCTATCCCCTTTCCTACTTTCCTCTCCAAAAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACATTTCAAATGCTATCCCCTTTCCTACTTTCCTCTCCAAAAGCC  800

seq1  CCTTATAGCCTCACCCCCACCTCTGCTCCCCAACCCACCCACTCTTACTT  850
      ||||||||| ||||||||||||||||||||| |||||| |||||||||||
seq2  CCTTATAGCTTCACCCCCACCTCTGCTCCCCGACCCACTCACTCTTACTT  850

seq1  CCTGACCCTGGCATTCCCCTGTTCTGGGGCATATAATCTTCTCAAGACTG  900
      ||||||||||||||||||||||||| |||| |||||||||||| ||||||
seq2  CCTGACCCTGGCATTCCCCTGTTCT-GGGCCTATAATCTTCTC-AGACTG  898

seq1  AGAGCCTCTCCTCC-CCTTGATGGCCTACTAGGCCA-TCCTCTGCTACAT  948
      | |||||||||||| | ||||||||| |||| |||| || ||||||||||
seq2  AAAGCCTCTCCTCCACTTTGATGGCCGACTAAGCCATTCTTCTGCTACAT  948

seq1  ATGAAACTAGAG-ACACAAG-CTCTGG-GGATGAG-AGGTGGGGAATGG  993
      || ||||| ||| ||||||| |||||| | ||||| || ||||||||||
seq2  AT-AAACTTGAGAACACAAGCCTCTGGTGAATGAGCAGTTGGGGAATGG  996