BAC Information

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BAC

Clone NameB6Ng01-158J16
Chromosome16 (Build37)16 (Build37)
Map Location 94,112,565 - 94,113,72794,442,998 - 94,444,055
singlet/doubletsingletsinglet
Overlap geneSim2
Upstream geneLOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14
Downstream geneHlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3, Dscr3, Dyrk1a, Kcnj6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158J16.bB6Ng01-158J16.g
ACCDH952507DH952508
length1,1421,045
definitionDH952507|Mus musculus domesticus DNA, BAC clone: B6Ng01-158J16, 5' end.DH952508|Mus musculus domesticus DNA, BAC clone: B6Ng01-158J16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,112,565 - 94,113,727)(94,442,998 - 94,444,055)
sequence
gaattctctcaaagaggaaagaagaggctgtgtccccagaggagcaactg
gaagtctttcccagctcacagcacttagaaacgtggaggtctttacaggg
aagagttgggtctttacagggaagccagctcagaggccaggctgctgtca
tggaggagacactttaagggggttgggacccttcactgtcgcttgagttt
ctgtctccttgagatgttctcgaaagcctgttgggttacagccagctctg
gagggacagccccagatggacagtggggaaggtgttggcttgaggccccc
caagtcacaggagcaagggtggtgggcctcggggagcagccactggccac
tcacccatcgtcatcccagcacaactgaactcagcttaacctgatgttcg
gatcctcagggtgttgtggtgttctctttgaaaccgtggctgatgctttg
gctaaggtcgggtgaggccagccgtgtttagggtgtggcacatccctctg
acaggtttacagacactggaggtttgaacaaacccaggagggcaccctgc
caagccctttccctggcctttaatttgtaatgttgctcaatggtttgttg
agaacatggtacgtgcgtgattctttaaccacattcgtattcttgccgat
ttagtccaatggtccaggggctggagtctctcagtttatgctgcagagat
acctgggctgtttttggagtcagacagctgtcttttacctttcctcccac
ccagttagacttgactgggtttgcagttctagtgacccttggagaaatct
ctagagtcctgaacaaacagagcaggagccagtgcctcccccacccccct
cactggaaccctgttccctctccatcttagaggaacatcacggaaatata
catgcaactggagagccattcccaggaaatccgagtctctgaaagatgta
tgatccaggtctgagcagataaagaataaaaatggggtcacgtttcccgt
tttgtctgtgggctagtgttcgcactcttcagcaggcctcagtgcagctt
ctcataactgtcccaccactccaccgtctcctgagctgacttcttcgctg
cccactttatggagcattcttcgccttcatctgttctaaaat
gaattcactttgtcgaccaggctggcctcgaactcagaaatccgcctgcc
tctgcctcccgagtgctgggaaggagcttatttttttaagtaataaactc
cttctcaaatgaggtaaatacaggaatctacatacaagtagccacagggg
ctttcccagccttagggcttgcatggaggctggacaggaaggtacctgaa
gtccttcaggctgggatactcccttgctggctgacttcttttattttgag
ctctcacgttctctcctttaagccctttatgcctcctggaggtgctgttc
agtcggaaggtaaactcgcttttccctgcggatgttccatgccacgggag
agtcttattcacagcacacggtgtcatgcgaagttctcgacttctccagg
gttgccctagggacggatggccagaactccctctggcacccagggaaatc
tgcgtgggccccgtggccctctcatactaagtagccactgtcgtgggtgg
aagtggggagcagttgtctgggtgaatgtttaaatgcttcccctggaagg
aactgtgtcctggggtcacttccaagccaaacagccagactttgggggag
ctgggatggcccagtgtggtagtacccacctgccatctcagcttttggga
ggcagaggctggaagattgggaacccaaggctgtcttcaagtgtgtagta
gattccaagaccagcttggaatatgtgaagccctgtctgaatactggtta
aataactggttggctgtttaagtcagtaactccatggactgcagaggagt
tggtggcactgcagtaagaactcatctgccctggggagccgccccggccc
acagagccatctggaggcttgagaggcccaggacggtggagggaggggaa
agttcagcagaggggaggacgctgtctcagtgaagtcttactacatttag
acttagagttcttccagcttgtttgctgtcagcaggtaacacctagctct
gcctggcccatgagggaggttcttatgctggacaggtgcaagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_94112565_94113727
seq2: B6Ng01-158J16.b_43_1184

seq1  GAATTCTCTCAAAGAGGAAAGAAGAGGCTGTGTCCCCAGAGGAGCAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAAAGAGGAAAGAAGAGGCTGTGTCCCCAGAGGAGCAACTG  50

seq1  GAAGTCTTTCCCAGCTCACAGCACTTAGAAACGTGGAGGTCTTTACAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTTCCCAGCTCACAGCACTTAGAAACGTGGAGGTCTTTACAGGG  100

seq1  AAGAGTTGGGTCTTTACAGGGAAGCCAGCTCAGAGGCCAGGCTGCTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTGGGTCTTTACAGGGAAGCCAGCTCAGAGGCCAGGCTGCTGTCA  150

seq1  TGGAGGAGACACTTTAAGGGGGTTGGGACCCTTCACTGTCGCTTGAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGACACTTTAAGGGGGTTGGGACCCTTCACTGTCGCTTGAGTTT  200

seq1  CTGTCTCCTTGAGATGTTCTCGAAAGCCTGTTGGGTTACAGCCAGCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCTTGAGATGTTCTCGAAAGCCTGTTGGGTTACAGCCAGCTCTG  250

seq1  GAGGGACAGCCCCAGATGGACAGTGGGGAAGGTGTTGGCTTGAGGCCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACAGCCCCAGATGGACAGTGGGGAAGGTGTTGGCTTGAGGCCCCC  300

seq1  CAAGTCACAGGAGCAAGGGTGGTGGGCCTCGGGGAGCAGCCACTGGCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCACAGGAGCAAGGGTGGTGGGCCTCGGGGAGCAGCCACTGGCCAC  350

seq1  TCACCCATCGTCATCCCAGCACAACTGAACTCAGCTTAACCTGATGTTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCATCGTCATCCCAGCACAACTGAACTCAGCTTAACCTGATGTTCG  400

seq1  GATCCTCAGGGTGTTGTGGTGTTCTCTTTGAAACCGTGGCTGATGCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCAGGGTGTTGTGGTGTTCTCTTTGAAACCGTGGCTGATGCTTTG  450

seq1  GCTAAGGTCGGGTGAGGCCAGCCGTGTTTAGGGTGTGGCACATCCCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGTCGGGTGAGGCCAGCCGTGTTTAGGGTGTGGCACATCCCTCTG  500

seq1  ACAGGTTTACAGACACTGGAGGTTTGAACAAACCCAGGAGGGCACCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTACAGACACTGGAGGTTTGAACAAACCCAGGAGGGCACCCTGC  550

seq1  CAAGCCCTTTCCCTGGCCTTTAATTTGTAATGTTGCTCAATGGTTTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCTTTCCCTGGCCTTTAATTTGTAATGTTGCTCAATGGTTTGTTG  600

seq1  AGAACATGGTACGTGCGTGATTCTTTAACCACATTCGTATTCTTGCCGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGGTACGTGCGTGATTCTTTAACCACATTCGTATTCTTGCCGAT  650

seq1  TTAGTCCAATGGTCCAGGGGCTGGAGTCTCTCAGTTTATGCTGCAGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCAATGGTCCAGGGGCTGGAGTCTCTCAGTTTATGCTGCAGAGAT  700

seq1  ACCTGGGCTGTTTTTGGAGTCAGACAGCTGTCTTTTACCTTTCCTCCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGCTGTTTTTGGAGTCAGACAGCTGTCTTTTACCTTTCCTCCCAC  750

seq1  CCAGTTAGACTTGACTGGGTTTGCAGTTCTAGTGACCCTTGGAGAAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTAGACTTGACTGGGTTTGCAGTTCTAGTGACCCTTGGAGAAATCT  800

seq1  CTAGAGTCCTGAACAAACAGAGCAGGAGCCAGTGCCTCCCCCACCCCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTCCTGAACAAACAGAGCAGGAGCCAGTGCCTCCCCCACCCCCCT  850

seq1  CACCTGGAACCCTGTTCCCTCTCCATCTTAGAGGAACATCAACGGAAATA  900
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CA-CTGGAACCCTGTTCCCTCTCCATCTTAGAGGAACATC-ACGGAAATA  898

seq1  TACATGCAACTGGAGAGCCATTCCAAGGAAATCCGAGTCTCTGAAAGATG  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TACATGCAACTGGAGAGCCATTCCCAGGAAATCCGAGTCTCTGAAAGATG  948

seq1  TATGATCCAGGTCTGAGCAGATTAAAGAATAAAAATGGGGTCACGTTTCC  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TATGATCCAGGTCTGAGCAGA-TAAAGAATAAAAATGGGGTCACGTTTCC  997

seq1  CGGTTCTGTCTGT-GGCTAGTGTTTCGCAACTCTCAAGCAGGGCCCTCAG  1049
      | ||| ||||||| |||||||| ||||| |||||  ||||||  ||||||
seq2  C-GTTTTGTCTGTGGGCTAGTG-TTCGC-ACTCTTCAGCAGG--CCTCAG  1042

seq1  TGCCAGCCTTCTTCATTACTGTCCCCACCACTCCACCGTCTCCTGAGCTG  1099
      || ||| |||| |||| ||||| |||||||||||||||||||||||||||
seq2  TG-CAG-CTTC-TCATAACTGT-CCCACCACTCCACCGTCTCCTGAGCTG  1088

seq1  ACTTCTTCCCGCTGCCACACTGTTATTGGAACCCTTTCTTCTGCTCTTTC  1149
      |||||||  ||||||| |||| ||| |||| |      |||| | | |||
seq2  ACTTCTT--CGCTGCC-CACT-TTA-TGGAGC-----ATTCTTCGCCTTC  1128

seq1  ATCTGTTCTTAAAT  1163
      ||||||||| ||||
seq2  ATCTGTTCTAAAAT  1142

seq1: chr16_94442998_94444055
seq2: B6Ng01-158J16.g_66_1110 (reverse)

seq1  ACTC-TGCACCTCGTTCCAAGCATAAGGACCCTCCCTCATGGGGCCAGGC  49
      |||| ||||||| ||  | ||||||| || |||||||||| |||||||||
seq2  ACTCTTGCACCT-GT--CCAGCATAA-GAACCTCCCTCAT-GGGCCAGGC  45

seq1  AGAGCCTAGGTGTTACCTGCTGACCAGCCAAACAAGCTTGGAAGGAACTC  99
      |||| |||||||||||||||||| ||| ||||||||| ||||| ||||||
seq2  AGAG-CTAGGTGTTACCTGCTGA-CAG-CAAACAAGC-TGGAA-GAACTC  90

seq1  TAAGGTCTAAAATGTTAGTAAGACCTCACCTGAGACAGCGTCCTCCCCCT  149
      ||| |||| ||||| ||||||||| ||| ||||||||||||||| |||||
seq2  TAA-GTCT-AAATG-TAGTAAGACTTCA-CTGAGACAGCGTCCT-CCCCT  135

seq1  CTGCTGAACTTTCCCCTCCCTCCACCGTCCTGGGCCTCTCAAGCCTCCAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAACTTTCCCCTCCCTCCACCGTCCTGGGCCTCTCAAGCCTCCAG  185

seq1  ATGGCTCTGTGGGCCGGGGCGGCT-CCCAGGGCAGCTGAGTTCTTACTGC  248
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  ATGGCTCTGTGGGCCGGGGCGGCTCCCCAGGGCAGATGAGTTCTTACTGC  235

seq1  AGTGCCACCAACTCCTCTGCAGTCCATGGAGTTACTGACTTAAACAGCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCACCAACTCCTCTGCAGTCCATGGAGTTACTGACTTAAACAGCCA  285

seq1  ACCAGTTATTTAACCAGTATTCAGACAGGGCTTCACATATTCCAAGCTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTATTTAACCAGTATTCAGACAGGGCTTCACATATTCCAAGCTGG  335

seq1  TCTTGGAATCTACTACACACTTGAAGACAGCCTTGGGTTCCCAATCTTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAATCTACTACACACTTGAAGACAGCCTTGGGTTCCCAATCTTCC  385

seq1  AGCCTCTGCCTCCCAAAAGCTGAGATGGCAGGTGGGTACTACCACACTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGCCTCCCAAAAGCTGAGATGGCAGGTGGGTACTACCACACTGG  435

seq1  GCCATCCCAGCTCCCCCAAAGTCTGGCTGTTTGGCTTGGAAGTGACCCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCCAGCTCCCCCAAAGTCTGGCTGTTTGGCTTGGAAGTGACCCCA  485

seq1  GGACACAGTTCCTTCCAGGGGAAGCATTTAAACATTCACCCAGACAACTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGTTCCTTCCAGGGGAAGCATTTAAACATTCACCCAGACAACTG  535

seq1  CTCCCCACTTCCACCCACGACAGTGGCTACTTAGTATGAGAGGGCCACGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACTTCCACCCACGACAGTGGCTACTTAGTATGAGAGGGCCACGG  585

seq1  GGCCCACGCAGATTTCCCTGGGTGCCAGAGGGAGTTCTGGCCATCCGTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACGCAGATTTCCCTGGGTGCCAGAGGGAGTTCTGGCCATCCGTCC  635

seq1  CTAGGGCAACCCTGGAGAAGTCGAGAACTTCGCATGACACCGTGTGCTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCAACCCTGGAGAAGTCGAGAACTTCGCATGACACCGTGTGCTGT  685

seq1  GAATAAGACTCTCCCGTGGCATGGAACATCCGCAGGGAAAAGCGAGTTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGACTCTCCCGTGGCATGGAACATCCGCAGGGAAAAGCGAGTTTA  735

seq1  CCTTCCGACTGAACAGCACCTCCAGGAGGCATAAAGGGCTTAAAGGAGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCGACTGAACAGCACCTCCAGGAGGCATAAAGGGCTTAAAGGAGAG  785

seq1  AACGTGAGAGCTCAAAATAAAAGAAGTCAGCCAGCAAGGGAGTATCCCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGAGAGCTCAAAATAAAAGAAGTCAGCCAGCAAGGGAGTATCCCAG  835

seq1  CCTGAAGGACTTCAGGTACCTTCCTGTCCAGCCTCCATGCAAGCCCTAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGACTTCAGGTACCTTCCTGTCCAGCCTCCATGCAAGCCCTAAG  885

seq1  GCTGGGAAAGCCCCTGTGGCTACTTGTATGTAGATTCCTGTATTTACCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAAAGCCCCTGTGGCTACTTGTATGTAGATTCCTGTATTTACCTC  935

seq1  ATTTGAGAAGGAGTTTATTACTTAAAAAAATAAGCTCCTTCCCAGCACTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGAAGGAGTTTATTACTTAAAAAAATAAGCTCCTTCCCAGCACTC  985

seq1  GGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCGACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCGACA  1035

seq1  AAGTGAATTC  1058
      ||||||||||
seq2  AAGTGAATTC  1045