BAC Information

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BAC

Clone NameB6Ng01-158L18
Chromosome16 (Build37)
Map Location 40,082,368 - 40,204,752
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667400
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158L18.bB6Ng01-158L18.g
ACCDH952606DH952607
length1,165872
definitionDH952606|Mus musculus domesticus DNA, BAC clone: B6Ng01-158L18, 5' end.DH952607|Mus musculus domesticus DNA, BAC clone: B6Ng01-158L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,203,578 - 40,204,752)(40,082,368 - 40,083,239)
sequence
gaattcagagaatcaaactgcctgggttattttcttccatgctactacct
aagtatactcagtaagtctatcagagaaattcatctttatctgacaagag
tattcagaaaaaagaaaaattctcattaagctcagtaatcagctccctat
taaaatttgattattacatttatgcaaaagtgttatagcagtaaaccttt
tatttgttatctggtacaatgtcaaaccatgagatattgagtcctagaat
ggcttcaaaactgtcacatgtctgacaaaattttcatacagagtccccaa
aagagcatgaaaatatgtattctaagtagtttctctctctattatttcta
aagctacaaagtaatttcctggtgttgtgcatagaaatcgaaccttctaa
gtagggatttttgagtatgtgtgcatctagaaacatgtttgaaaaaatgt
cacaaacattcctgaaagcaaaaaatgaatttcctaaaaggttcatttgg
tattgaaggaaaaacttccaggattcttcagtcttgttatattcatagct
ccacaaattatcagatgactattttagataacataatcacaggttatttc
ttttagcattatctagaccagtagtttcctaccttcctaatgctgagaca
aattttcatgctgtggtggccctaatcataaatgtatttttgttgttatt
ttataactgaaattttactactactataaataataatgtaaatatctgcc
ttttgtttgtttgtttgtttggtcttaagggacactgtgaaaaggtggta
caatccccaaaggagtcatgacccacaggatgagaaacactgatacagac
attgtaacaattttctaagaacccacagttcttacatggcatagagttac
ttgatagacagtgggtcaaataaccaaatatatggacctctgtatacaag
tctctattgtctctattagagcaattcctattgtagtttccatctaggtt
ttaatatctcattgctaactgttgggtcctcgtgttttctctatcaaatg
ctgtctgtatcactaattctgcagcatcatgaggacataattcatcttct
acaactgtagcctgaataccggatcttttattgaagaaacatgctttcaa
cacactatcctgctg
gaattccactgagaatgagaggagcatttgggaatggaatttctatactt
tttatttttctttttttcactttgaggaattgtgtctctgtggttttcac
tgattacttttttaactaaaagcagcatgggtagcaatgtgtaccttttg
ataagccttctacatcttgggcattttcagaagctctatagggacagaat
atccacattaatgtactctctggacatgctaatgtgtcccgcaggaggca
aaagaggtcagcctgaacagactggcagctggtgttagaatcattctttc
taccagccttcagcaaaatgcccttttaactgtttttaacctttatcttg
ggaagttgaagcttttgggtttagattatattagaacttccatctctatg
ttctcagtacttaaatcttactacatgtgtctaaaatccatataagccac
agcatagaatcacatgaaagaagaaataatttcatcttcatttattttct
tcagttctctaatatttatgcactattaaattgctctggtatctaatccc
atggtttcttattttaaatatgatgcagatattttatagtatgttgacag
ttatggaagaacagaaaataagggaaagaaaaggaaagaaaagaacaata
gagtagggcagtggtggtgcacgcctttaatcccagcattaggaggcaga
agcagctggatttctgagttggaggccagcctggtctacaaagtgagttc
cagaatagccagggctacacagagaaactctgcctcgaaaacacaaacaa
acaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaagggaagg
gaagggaagggaagggaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_40203578_40204752
seq2: B6Ng01-158L18.b_44_1208 (reverse)

seq1  CAGCAGGATAGTGTGTTGAAAAGCATGTTCTTTCAAATAAAAGATCTGGG  50
      |||||||||||||||||| ||||||||||  ||| |||||||||||  ||
seq2  CAGCAGGATAGTGTGTTG-AAAGCATGTTTCTTC-AATAAAAGATC-CGG  47

seq1  TAATTTCA-GCTACAGTTGTAGAAGATGAATTTAATGTTCTTCATGATGC  99
      ||  |||| |||||||||||||||||||||||  ||| || |||||||||
seq2  TA--TTCAGGCTACAGTTGTAGAAGATGAATT--ATG-TCCTCATGATGC  92

seq1  TGCAGAATTAGTGATACAGACCAGCAATTTGATAGAGAAAACACGAGGAC  149
      |||||||||||||||||||| |||| ||||||||||||||||||||||||
seq2  TGCAGAATTAGTGATACAGA-CAGC-ATTTGATAGAGAAAACACGAGGAC  140

seq1  CCAACAGTTAGCAAATGAGAATATTAAAA-CTAGATGGAAACTACAATAG  198
      |||||||||||| |||||| ||||||||| ||||||||||||||||||||
seq2  CCAACAGTTAGC-AATGAG-ATATTAAAACCTAGATGGAAACTACAATAG  188

seq1  GAATTGCTCTAATAGAGACAATAGAGACTTGTATACAGAGGTCCATATAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCTCTAATAGAGACAATAGAGACTTGTATACAGAGGTCCATATAT  238

seq1  TTGGTTATTTGACCCACTGTCTATCAAGTAACTCTATGCCATGTAAGAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTATTTGACCCACTGTCTATCAAGTAACTCTATGCCATGTAAGAAC  288

seq1  TGTGGGTTCTTAGAAAATTGTTACAATGTCTGTATCAGTGTTTCTCATCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTCTTAGAAAATTGTTACAATGTCTGTATCAGTGTTTCTCATCC  338

seq1  TGTGGGTCATGACTCCTTTGGGGATTGTACCACCTTTTCACAGTGTCCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTCATGACTCCTTTGGGGATTGTACCACCTTTTCACAGTGTCCCT  388

seq1  TAAGACCAAACAAACAAACAAACAAAAGGCAGATATTTACATTATTATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCAAACAAACAAACAAACAAAAGGCAGATATTTACATTATTATTT  438

seq1  ATAGTAGTAGTAAAATTTCAGTTATAAAATAACAACAAAAATACATTTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGTAGTAAAATTTCAGTTATAAAATAACAACAAAAATACATTTAT  488

seq1  GATTAGGGCCACCACAGCATGAAAATTTGTCTCAGCATTAGGAAGGTAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGGCCACCACAGCATGAAAATTTGTCTCAGCATTAGGAAGGTAGG  538

seq1  AAACTACTGGTCTAGATAATGCTAAAAGAAATAACCTGTGATTATGTTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTGGTCTAGATAATGCTAAAAGAAATAACCTGTGATTATGTTAT  588

seq1  CTAAAATAGTCATCTGATAATTTGTGGAGCTATGAATATAACAAGACTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATAGTCATCTGATAATTTGTGGAGCTATGAATATAACAAGACTGA  638

seq1  AGAATCCTGGAAGTTTTTCCTTCAATACCAAATGAACCTTTTAGGAAATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCTGGAAGTTTTTCCTTCAATACCAAATGAACCTTTTAGGAAATT  688

seq1  CATTTTTTGCTTTCAGGAATGTTTGTGACATTTTTTCAAACATGTTTCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTGCTTTCAGGAATGTTTGTGACATTTTTTCAAACATGTTTCTA  738

seq1  GATGCACACATACTCAAAAATCCCTACTTAGAAGGTTCGATTTCTATGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACACATACTCAAAAATCCCTACTTAGAAGGTTCGATTTCTATGCA  788

seq1  CAACACCAGGAAATTACTTTGTAGCTTTAGAAATAATAGAGAGAGAAACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCAGGAAATTACTTTGTAGCTTTAGAAATAATAGAGAGAGAAACT  838

seq1  ACTTAGAATACATATTTTCATGCTCTTTTGGGGACTCTGTATGAAAATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAATACATATTTTCATGCTCTTTTGGGGACTCTGTATGAAAATTT  888

seq1  TGTCAGACATGTGACAGTTTTGAAGCCATTCTAGGACTCAATATCTCATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGACATGTGACAGTTTTGAAGCCATTCTAGGACTCAATATCTCATG  938

seq1  GTTTGACATTGTACCAGATAACAAATAAAAGGTTTACTGCTATAACACTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACATTGTACCAGATAACAAATAAAAGGTTTACTGCTATAACACTT  988

seq1  TTGCATAAATGTAATAATCAAATTTTAATAGGGAGCTGATTACTGAGCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAAATGTAATAATCAAATTTTAATAGGGAGCTGATTACTGAGCTT  1038

seq1  AATGAGAATTTTTCTTTTTTCTGAATACTCTTGTCAGATAAAGATGAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAATTTTTCTTTTTTCTGAATACTCTTGTCAGATAAAGATGAATT  1088

seq1  TCTCTGATAGACTTACTGAGTATACTTAGGTAGTAGCATGGAAGAAAATA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATAGACTTACTGAGTATACTTAGGTAGTAGCATGGAAGAAAATA  1138

seq1  ACCCAGGCAGTTTGATTCTCTGAATTC  1175
      |||||||||||||||||||||||||||
seq2  ACCCAGGCAGTTTGATTCTCTGAATTC  1165

seq1: chr16_40082368_40083239
seq2: B6Ng01-158L18.g_69_940

seq1  GAATTCCACTGAGAATGAGAGGAGCATTTGGGAATGGAATTTCTATACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGAGAATGAGAGGAGCATTTGGGAATGGAATTTCTATACTT  50

seq1  TTTATTTTTCTTTTTTTCACTTTGAGGAATTGTGTCTCTGTGGTTTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTCTTTTTTTCACTTTGAGGAATTGTGTCTCTGTGGTTTTCAC  100

seq1  TGATTACTTTTTTAACTAAAAGCAGCATGGGTAGCAATGTGTACCTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTTTTTTAACTAAAAGCAGCATGGGTAGCAATGTGTACCTTTTG  150

seq1  ATAAGCCTTCTACATCTTGGGCATTTTCAGAAGCTCTATAGGGACAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCTTCTACATCTTGGGCATTTTCAGAAGCTCTATAGGGACAGAAT  200

seq1  ATCCACATTAATGTACTCTCTGGACATGCTAATGTGTCCCGCAGGAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACATTAATGTACTCTCTGGACATGCTAATGTGTCCCGCAGGAGGCA  250

seq1  AAAGAGGTCAGCCTGAACAGACTGGCAGCTGGTGTTAGAATCATTCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGTCAGCCTGAACAGACTGGCAGCTGGTGTTAGAATCATTCTTTC  300

seq1  TACCAGCCTTCAGCAAAATGCCCTTTTAACTGTTTTTAACCTTTATCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCCTTCAGCAAAATGCCCTTTTAACTGTTTTTAACCTTTATCTTG  350

seq1  GGAAGTTGAAGCTTTTGGGTTTAGATTATATTAGAACTTCCATCTCTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTGAAGCTTTTGGGTTTAGATTATATTAGAACTTCCATCTCTATG  400

seq1  TTCTCAGTACTTAAATCTTACTACATGTGTCTAAAATCCATATAAGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTACTTAAATCTTACTACATGTGTCTAAAATCCATATAAGCCAC  450

seq1  AGCATAGAATCACATGAAAGAAGAAATAATTTCATCTTCATTTATTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGAATCACATGAAAGAAGAAATAATTTCATCTTCATTTATTTTCT  500

seq1  TCAGTTCTCTAATATTTATGCACTATTAAATTGCTCTGGTATCTAATCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTCTAATATTTATGCACTATTAAATTGCTCTGGTATCTAATCCC  550

seq1  ATGGTTTCTTATTTTAAATATGATGCAGATATTTTATAGTATGTTGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCTTATTTTAAATATGATGCAGATATTTTATAGTATGTTGACAG  600

seq1  TTATGGAAGAACAGAAAATAAGGGAAAGAAAAGGAAAGAAAAGAACAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAAGAACAGAAAATAAGGGAAAGAAAAGGAAAGAAAAGAACAATA  650

seq1  GAGTAGGGCAGTGGTGGTGCACGCCTTTAATCCCAGCATTAGGAGGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGGCAGTGGTGGTGCACGCCTTTAATCCCAGCATTAGGAGGCAGA  700

seq1  AGCAGCTGGATTTCTGAGTTGGAGGCCAGCCTGGTCTACAAAGTGAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGGATTTCTGAGTTGGAGGCCAGCCTGGTCTACAAAGTGAGTTC  750

seq1  CAGAATAGCCAGGGCTACACAGAGAAACCCTGCCTCGAAAACACAAACAA  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAGAATAGCCAGGGCTACACAGAGAAACTCTGCCTCGAAAACACAAACAA  800

seq1  ACAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGGAAGG  850

seq1  GAAGGGAAGGGAAGGGAAGGGA  872
      |||||||||||||||||||| |
seq2  GAAGGGAAGGGAAGGGAAGGAA  872