BAC Information

Click to search

BAC

Clone NameB6Ng01-158P22
Chromosome16 (Build37)
Map Location 47,577,859 - 47,578,995
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628757
Downstream geneLOC628776, EG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158P22.bB6Ng01-158P22.g
ACCDH952789DH952790
length7501,200
definitionDH952789|Mus musculus domesticus DNA, BAC clone: B6Ng01-158P22, 5' end.DH952790|Mus musculus domesticus DNA, BAC clone: B6Ng01-158P22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttagtctgggagggaggttttcactgtgacttaagtccttttc
tttctggtatagaatgcttcaatcaaattatgtattttcttgcatataaa
agagaacaagccattttctcgtattaaatcctagattagtttaaaatagt
acaaaccttctttaaaaatgcttgtgttcaacatcttattaattcatgga
tgctaggtagaattgaacaccagagcaagaagcagatcgaattttgcaac
tcagttaaattgatctttagaaatactactggtaatgtctgtctaattaa
catcagaattcatattcaaatttatttcatgtaggagccagtcattggct
ataacctctcaagctatcaaggcagatttagtgctaaggtaatattgtga
aggcagtcatattcagtccactgtgactgaataaccttaacttccaatga
ctagaggataagaattgtgggaaattttcaggttctattaaatctctata
tgaatctctggattaagatgaaagaacacaaagaaaggatttcagaaaga
aaagtcggcaagatacttagcctgaggcttagaaactcctagaggagaat
gtgatgccacccatgaaataaaatccatccttagtgagaatcagagaaat
taaaaagaacaaccaggaagactggggcatgaattgggttcaagtcggtt
cacaaatgattgaggtaataaatattttaaaaacctattaagaagcagga


gaattcattgagtactcagttgagaattctttgtttagttctgtacccca
atttttaaaagggttatttgtttctctggagtctaatttcttgtgttcat
tgtatatattggatattagccctctatcagatgtagggttggtacagatc
ttttcccaatttgttggttgctgttttttccttttgaaagtgtcctttgc
cttacaaaagctttgcaattttatgaagtctaatttctcaattcttgatc
ttagagcataaattattggtgttttgttctgcaaattttcccctgtgccc
atgtgctgaggcacttccccacattctcctctataagtttcagtgtctct
ggttttatgtgaaggtctttgatccacttggacttgagcttcatacacgg
agacaaggatggatcgatttgcattcttctctatgataaccaccagttaa
acatgcaccattggttgaaaatgctgtctttttctactggatggttttag
ctcctttgtcaaagttcaagtgaccataggtgtgtgggtttatttctggg
tcttcaattctattccattgagctacctgcctgtcactgtacaaataaca
tgcagtttttatcacaatttctctatagtacaccttgaagtcaggcatgg
tgattccaccagaaatttattgttatgaataatttttgctatcctagggt
ttttgttatttcagatgaatttgcaaattgccctgtctaactcagtgaat
aattgagttggaattttgatggggattgcattgaatctgtagactgcttt
agggcaagatagccatttttactgtattaatcctgccattcaatgagtat
ggaagaacttttcatcttctgagaactttccaaattatttctttcttcag
agacttgaagttcttgtcatacagatggttcacttgtttatttagtgaca
ccaacatatttatactatttgtgactaatgtgaagggtgttggttcccta
atttctttttcagcctgttatccttttgagtagaggggaggcccactgat
tgttggttaattttatcctataacatgattgagtggttatcaggtagaga
tcctgggaatcttgggccactatataactatcatacgctgcagatggtat
tttaacatttctcttctccaagatttatactcccgttatgatctcgccgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_47577859_47578995
seq2: B6Ng01-158P22.b_48_1171 (reverse)

seq1  TATTTCATTTCATTATTTAATGAAAAGAAATGAGAAAGTGTTATTCTATG  50
      ||||||| |||||||||  ||||||||||   |||||||| |||||||||
seq2  TATTTCA-TTCATTATT--ATGAAAAGAATGAAGAAAGTG-TATTCTATG  46

seq1  TAGGTACTCTGAAGAATATTTTCAGATTTTTTTCCTACTTAGTAAAAAAT  100
      |  |||||||| |||   |||||||||||||   |||| |||||||||||
seq2  TTAGTACTCTG-AGA--TTTTTCAGATTTTT---CTAC-TAGTAAAAAAT  89

seq1  TTATAACTAAAAGCACAGATATAGTGCCTATAGAATTTCTTTACTTTTTC  150
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTAT-ACTAAAAGCACAGATATAGTGCCTATAGAATTTCTTTACTTTTCC  138

seq1  CAAAAAGCTAGAAGGATGTTTCCTGCCTAGAGACTAAGTAAAATCTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGCTAGAAGGATGTTTCCTGCCTAGAGACTAAGTAAAATCTTCTG  188

seq1  CTTTTCATTCAAGAAATTACATTGCTTTATGCAGCAGTGATACATTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTCAAGAAATTACATTGCTTTATGCAGCAGTGATACATTTATC  238

seq1  AAATTCCTATAATGTAAAATAATAGCGATTAAAATAATAATGTTAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTATAATGTAAAATAATAGCGATTAAAATAATAATGTTAAAAGA  288

seq1  CATTAGCTCACCGTGAATATTGAAAGATAGCTATTAATTGCCTGAGGCTG  350
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATTAGCTCACCGTGAATATTGAAAGATAGCTATTAATTG-CTGAGGCTG  337

seq1  CAAGAGTGGTGGGGAACCTTGAGGAAGCAAAGAAGAATCCTGCTTCTTAA  400
      ||||||||||||||||||||                 |||||||||||||
seq2  CAAGAGTGGTGGGGAACCTTNNNNNNNNNNNNNNNNNTCCTGCTTCTTAA  387

seq1  TAGGTTTTTAAAATATTTATTACCTCAATCATTTGTGAACCGACTTGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTTAAAATATTTATTACCTCAATCATTTGTGAACCGACTTGAAC  437

seq1  CCAATTCATGCCCCAGTCTTCCTGGTTGTTCTTTTTAATTTCTCTGATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCATGCCCCAGTCTTCCTGGTTGTTCTTTTTAATTTCTCTGATTC  487

seq1  TCACTAAGGATGGATTTTATTTCATGGGTGGCATCACATTCTCCTCTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAGGATGGATTTTATTTCATGGGTGGCATCACATTCTCCTCTAGG  537

seq1  AGTTTCTAAGCCTCAGGCTAAGTATCTTGCCGACTTTTCTTTCTGAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTAAGCCTCAGGCTAAGTATCTTGCCGACTTTTCTTTCTGAAATC  587

seq1  CTTTCTTTGTGTTCTTTCATCTTAATCCAGAGATTCATATAGAGATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTGTGTTCTTTCATCTTAATCCAGAGATTCATATAGAGATTTAA  637

seq1  TAGAACCTGAAAATTTCCCACAATTCTTATCCTCTAGTCATTGGAAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTGAAAATTTCCCACAATTCTTATCCTCTAGTCATTGGAAGTTA  687

seq1  AGGTTATTCAGTCACAGTGGACTGAATATGACTGCCTTCACAATATTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATTCAGTCACAGTGGACTGAATATGACTGCCTTCACAATATTACC  737

seq1  TTAGCACTAAATCTGCCTTGATAGCTTGAGAGGTTATAGCCAATGACTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTAAATCTGCCTTGATAGCTTGAGAGGTTATAGCCAATGACTGG  787

seq1  CTCCTACATGAAATAAATTTGAATATGAATTCTGATGTTAATTAGACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACATGAAATAAATTTGAATATGAATTCTGATGTTAATTAGACAGA  837

seq1  CATTACCAGTAGTATTTCTAAAGATCAATTTAACTGAGTTGCAAAATTCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCAGTAGTATTTCTAAAGATCAATTTAACTGAGTTGCAAAATTCG  887

seq1  ATCTGCTTCTTGCTCTGGTGTTCAATTCTACCTAGCATCCATGAATTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTCTTGCTCTGGTGTTCAATTCTACCTAGCATCCATGAATTAAT  937

seq1  AAGATGTTGAACACAAGCATTTTTAAAGAAGGTTTGTACTATTTTAAACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTGAACACAAGCATTTTTAAAGAAGGTTTGTACTATTTTAAACT  987

seq1  AATCTAGGATTTAATACGAGAAAATGGCTTGTTCTCTTTTATATGCAAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGGATTTAATACGAGAAAATGGCTTGTTCTCTTTTATATGCAAGA  1037

seq1  AAATACATAATTTGATTGAAGCATTCTATACCAGAAAGAAAAGGACTTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATAATTTGATTGAAGCATTCTATACCAGAAAGAAAAGGACTTAA  1087

seq1  GTCACAGTGAAAACCTCCCTCCCAGACTAAAGAATTC  1137
      |||||||||||||||||||||||||||||||||||||
seq2  GTCACAGTGAAAACCTCCCTCCCAGACTAAAGAATTC  1124


| Home | SequenceCutter | Blast | Download |