BAC Information

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BAC

Clone NameB6Ng01-159O09
Chromosome16 (Build37)11 (Build37)
Map Location 17,198,408 - 17,198,67954,757,511 - 54,758,551
singlet/doubletsingletsinglet
Overlap geneUbe2l3
Upstream geneD16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik
Downstream geneGm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159O09.bB6Ng01-159O09.g
ACCDH953428DH953429
length4201,037
definitionDH953428|Mus musculus domesticus DNA, BAC clone: B6Ng01-159O09, 5' end.DH953429|Mus musculus domesticus DNA, BAC clone: B6Ng01-159O09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,198,408 - 17,198,679)(54,757,511 - 54,758,551)
sequence
taattgaaataccctgtgtagccatctttgaacagatcatttttttttaa
agatttatttatttattatatgtaagtacactgtagctgtcttcagacac
accagaacagggcgtcagatctctttacagatggttgtgagccaccatgt
ggttgctgggatttgaactccggacctttggaagagcagtcgggtgctct
tacccactgagccatctcaccagcccagatcattttttttttatatatat
actgaatttgttagaagagtcacctctgatgggctgcagaaggggtctta
cacacttaaaaaagattggtttttatttatgtgcatgtgtgtgcgcctca
ctgtgagggtgtgccacgcacgtgcaggtgcctacagaagccagaactgg
gtgtcagatcccctggaact
gaattccctcatctgggaacagctagatcttgggggtcagaatttagcat
ttgtatacacaccatcagaccaaacccccaaactctccattcacccgagc
acagtaggaggcagccacctatacagaagccaccattcagcaagggacct
tcctacagggagacaccaacaccttgcccaaaacagagacagacactggt
agacatacagccagcagacctaagcaggccttgggctgctgagagtaagc
agctcttcatgcctttccctggactagatccggggctacatgatggaact
agagaggtccggtttgaggacagaaaacgacctacactcactgatcaacc
aacaataccaagcatgcagatgaagggatgctgtgattttgaactcacta
tggctggggagcagctaggagtatgcttggggcaggagagtggacccctc
ccccccgcccccatccctgacccacttccaggagagctggaagggtcaga
accacattaaattcacattcagcccctgactgtctgagtctgcattgcca
tagtagtggctgagaaggtgggatcaggcaccaagaacaacgggggagtt
ccctgactccaaagtcatgctaatttgcatagccactagcatttatagag
tactacatctcagacattgttttttcacctgactgtcccaaaagccctgg
gaagaaggcataggtgagagacaagattaccaagctcagtttgggggctt
aagccacactattgtctctggtttctggctgtattaggggagaggcctgg
agacagcacaggtcacctggcacaagggaacagccccaggacatcacttt
atggtagcaaagtctcagcagagcagagtatgagacatgccagtgggtgt
ggtcagaacatagggagaaagaagtcagaacagaatctgccttctccctc
cttgggttttatgtcctggaactccgggctcttatgcaagggaagaagcc
tggatgaagactagaagaagcctgctaactagataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_17198408_17198679
seq2: B6Ng01-159O09.b_92_473 (reverse)

seq1  AGTTCCAGGGGATATG----------------------------------  16
      ||||||||||||| ||                                  
seq2  AGTTCCAGGGGATCTGACACCCAGTTCTGGCTTCTGTAGGCACCTGCACG  50

seq1  --------ACACCCTCATA------CAGACACACATGCAGACAACACCAA  52
              ||||||||| |      |  ||||||||||| | ||    ||
seq2  TGCGTGGCACACCCTCACAGTGAGGCGCACACACATGCACATAAATAAAA  100

seq1  ACCA-----------------------------------CAT--------  59
      ||||                                   |||        
seq2  ACCAATCTTTTTTAAGTGTGTAAGACCCCTTCTGCAGCCCATCAGAGGTG  150

seq1  ------------AACTC-------ATTTAAAATTAAAAT--TCTGGGGCT  88
                  || ||       || |||||  |||||  ||| |||||
seq2  ACTCTTCTAACAAATTCAGTATATATATAAAAAAAAAATGATCT-GGGCT  199

seq1  GGTGAGATGGCTCAGTGGGTAAGAACACCCAACTGCTCTTCCAAAGGTCC  138
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  GGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCC  249

seq1  GGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGA  188
      |||||||||||||||||||||||||||||||||||||||||| |||| ||
seq2  GGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGA  299

seq1  GATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTAC  238
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATCTGACGCCCTGTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTAC  349

seq1  ATATAATAAATAAATAAATCTTTAAAATTAAAAT  272
      |||||||||||||||||||||||||||  |||||
seq2  ATATAATAAATAAATAAATCTTTAAAA-AAAAAT  382

seq1: chr11_54757511_54758551
seq2: B6Ng01-159O09.g_69_1105

seq1  GAATTCCCTCATCTGGGAACAGCTAGATCTTGGGGGTCAGAATTTAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCATCTGGGAACAGCTAGATCTTGGGGGTCAGAATTTAGCAT  50

seq1  TTGTATACACACCATCAGACCAAACCCCCAAACTCTCCATTCACCCGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATACACACCATCAGACCAAACCCCCAAACTCTCCATTCACCCGAGC  100

seq1  ACAGTAGGAGGCAGCCACCTATACAGAAGCCACCATTCAGCAAGGGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGGAGGCAGCCACCTATACAGAAGCCACCATTCAGCAAGGGACCT  150

seq1  TCCTACAGGGAGACACCAACACCTTGCCCAAAACAGAGACAGACACTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAGGGAGACACCAACACCTTGCCCAAAACAGAGACAGACACTGGT  200

seq1  AGACATACAGCCAGCAGACCTAAGCAGGCCTTGGGCTGCTGAGAGTAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACAGCCAGCAGACCTAAGCAGGCCTTGGGCTGCTGAGAGTAAGC  250

seq1  AGCTCTTCATGCCTTTCCCTGGACTAGATCCGGGGCTACATGATGGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTCATGCCTTTCCCTGGACTAGATCCGGGGCTACATGATGGAACT  300

seq1  AGAGAGGTCCGGTTTGAGGACAGAAAACGACCTACACTCACTGATCAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGTCCGGTTTGAGGACAGAAAACGACCTACACTCACTGATCAACC  350

seq1  AACAATACCAAGCATGCAGATGAAGGGATGCTGTGATTTTGAACTCACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATACCAAGCATGCAGATGAAGGGATGCTGTGATTTTGAACTCACTA  400

seq1  TGGCTGGGGAGCAGCTAGGAGTATGCTTGGGGCAGGAGAGTGGACCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGGAGCAGCTAGGAGTATGCTTGGGGCAGGAGAGTGGACCCCTC  450

seq1  CCCCCCGCCCCCATCCCTGACCCACTTCCAGGAGAGCTGGAAGGGTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCGCCCCCATCCCTGACCCACTTCCAGGAGAGCTGGAAGGGTCAGA  500

seq1  ACCACATTAAATTCACATTCAGCCCCTGACTGTCTGAGTCTGCATTGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATTAAATTCACATTCAGCCCCTGACTGTCTGAGTCTGCATTGCCA  550

seq1  TAGTAGTGGCTGAGAAGGTGGGATCAGGCACCAAGAACAACGGGGGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTGGCTGAGAAGGTGGGATCAGGCACCAAGAACAACGGGGGAGTT  600

seq1  CCCTGACTCCAAAGTCATGCTAATTTGCATAGCCACTAGCATTTATAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTCCAAAGTCATGCTAATTTGCATAGCCACTAGCATTTATAGAG  650

seq1  TACTACATCTCAGACATTGTTTTTTCACCTGACTGTCCCAAAAGCCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACATCTCAGACATTGTTTTTTCACCTGACTGTCCCAAAAGCCCTGG  700

seq1  GAAGAAGGCATAGGTGAGAGACAAGATTACCAAGCTCAGTTTGGGGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGCATAGGTGAGAGACAAGATTACCAAGCTCAGTTTGGGGGCTT  750

seq1  AAGCCACACTATTGTCTCTGGTTTCTGGCTGTATTAGGGGAGAGGCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACACTATTGTCTCTGGTTTCTGGCTGTATTAGGGGAGAGGCCTGG  800

seq1  AGACAGCACAGGTCACCTGGCACAAGGGAACAGCCCCAGGACATCACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCACAGGTCACCTGGCACAAGGGAACAGCCCCAGGACATCACTTT  850

seq1  ATGGTAGCAAAGTCTCAGCAGAGGCAGAGTTATGAGACATGCCAGTGGGT  900
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  ATGGTAGCAAAGTCTCAGCAGA-GCAGAG-TATGAGACATGCCAGTGGGT  898

seq1  GTGGTCAGAACATAGGGAGAAAGAAAGTTCAGAACAGAATCTGCCTGCTC  950
      |||||||||||||||||||||||||   |||||||||||||||||| |||
seq2  GTGGTCAGAACATAGGGAGAAAGAA--GTCAGAACAGAATCTGCCTTCTC  946

seq1  CCTCCTT-GGTTTTATGTCCTTGGACTCCGGTCTTCTTATGCAAGGGGAG  999
      ||||||| ||||||||||||| | ||||||| | |||||||||| |||| 
seq2  CCTCCTTGGGTTTTATGTCCTGGAACTCCGGGC-TCTTATGCAA-GGGAA  994

seq1  GAAGCCTGAATG-AGACTTAGAGACGCTGGCTAACTAGATAAA  1041
      |||||||| ||| |||||   ||| ||  ||||||||||||||
seq2  GAAGCCTGGATGAAGACTAGAAGAAGCCTGCTAACTAGATAAA  1037