BAC Information

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BAC

Clone NameB6Ng01-160A13
Chromosome16 (Build37)
Map Location 90,570,611 - 90,719,580
singlet/doubletdoublet
Overlap gene2610039C10Rik
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
Downstream geneMrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160A13.bB6Ng01-160A13.g
ACCDH953520DH953521
length1,141535
definitionDH953520|Mus musculus domesticus DNA, BAC clone: B6Ng01-160A13, 5' end.DH953521|Mus musculus domesticus DNA, BAC clone: B6Ng01-160A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,570,611 - 90,571,755)(90,719,041 - 90,719,580)
sequence
gaattccaagagaatggcaaacatcttatcctgaacattttagcctgtat
actattaaatagattcaataaatttttttcattggataaaacatttatat
gtaatgtaatacacaaatcttagatgtgtgtttgttgagtttgagaaata
ttgtgcccatgtagcagacacctctgttcagattgagactactccatttc
tcaagatctcttaggctacttatgctatagcaacttagctgcactctaag
tagtatacagtgaaataactttaagaatagttctaggagataaacacttt
tttgtttgtttgaaacagggtctcacattgtatcccaaggctggccttga
actcagaatcttcctggttacatatacattgactattgtttggttatgag
catcactgacactgtggaacctttaagaacagtggtgtagaggaagggaa
tcaggccaagggactgccaccctcatgaaaacatgaatactgtcccatgg
cagtgtgtaagcattgtaggattgaattagcttctgagagaagaagtggt
gtaagccagcctagctcctcccctgaatccttctccacccattcccccca
ccgcaacccccattcccctgcaagtcctcactgctgcagtgacatacaca
gggcagccctgagcacacatgagttctcactgtgtcaactacacaactct
aacccaagctaagtcaatgctggccctgggtctcaaagctgcacacactg
ggcattaggtggctgtctttttctctcttttttggtttggttcaaaactg
aggcaaacatttttagtacagctcatgtgaataaaattacttttatagat
gtgagctaaagatgtaaattcctatacagcagtcccactctgaggaggtg
tcctagaatatagaaagcatacttatatataacaaactcaatgaaaaaaa
agatggcagtgtatgttatgatagcaatagaaagatacccagaaatgtca
gtgctatatagagtagctgttacataagcactgtttttatatcttgtacc
ttagaatgtggtgcaaacagagaagtgaaaattttgtcttatttatctta
aatagcaacaaagccatggggtttctaatgaatattcatac
aaaagtgcttgaacgttcatttgtttggtttttttttttgtttgtttgca
aactaaattcatatttaagtgagataaaaaaattctggggccttgaaatc
tacatattcagtgagcatgcactgtgctctgctctgcccagcccccttct
aggaactgagatggcctgtcacagcactctgcagagctagctcttagtgt
ctgagcattctgagactgatagagtgtaactggaagcatgctcctaggcc
cggggggcggcaggaggggggggggcggcaggggggtcattttagatcca
aactgtgatgtctgtatgaactctacacttagtggtctcatttaacaatt
agatgtagccgggcgtggtggcgcatgcctttaatcccagcactctggag
gcagaggcaggtggatttttgagttcgaggccagcctggtctacagagtg
agttccaagacagctcgggctacacagagaaatcctagcttgaaaaacca
aaccaataaaaaaaaaaaaaaaaaaaaattggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90570611_90571755
seq2: B6Ng01-160A13.b_47_1187

seq1  GAATTCCAAGAGAATGGCAAACATCTTATCCTGAACATTTTAGCCTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAGAATGGCAAACATCTTATCCTGAACATTTTAGCCTGTAT  50

seq1  ACTATTAAATAGATTCAATAAATTTTTTTCATTGGATAAAACATTTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAAATAGATTCAATAAATTTTTTTCATTGGATAAAACATTTATAT  100

seq1  GTAATGTAATACACAAATCTTAGATGTGTGTTTGTTGAGTTTGAGAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTAATACACAAATCTTAGATGTGTGTTTGTTGAGTTTGAGAAATA  150

seq1  TTGTGCCCATGTAGCAGACACCTCTGTTCAGATTGAGACTACTCCATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCCATGTAGCAGACACCTCTGTTCAGATTGAGACTACTCCATTTC  200

seq1  TCAAGATCTCTTAGGCTACTTATGCTATAGCAACTTAGCTGCACTCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATCTCTTAGGCTACTTATGCTATAGCAACTTAGCTGCACTCTAAG  250

seq1  TAGTATACAGTGAAATAACTTTAAGAATAGTTCTAGGAGATAAACACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATACAGTGAAATAACTTTAAGAATAGTTCTAGGAGATAAACACTTT  300

seq1  TTTGTTTGTTTGAAACAGGGTCTCACATTGTATCCCAAGGCTGGCCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGAAACAGGGTCTCACATTGTATCCCAAGGCTGGCCTTGA  350

seq1  ACTCAGAATCTTCCTGGTTACATATACATTGACTATTGTTTGGTTATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAATCTTCCTGGTTACATATACATTGACTATTGTTTGGTTATGAG  400

seq1  CATCACTGACACTGTGGAACCTTTAAGAACAGTGGTGTAGAGGAAGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGACACTGTGGAACCTTTAAGAACAGTGGTGTAGAGGAAGGGAA  450

seq1  TCAGGCCAAGGGACTGCCACCCTCATGAAAACATGAATACTGTCCCATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCAAGGGACTGCCACCCTCATGAAAACATGAATACTGTCCCATGG  500

seq1  CAGTGTGTAAGCATTGTAGGATTGAATTAGCTTCTGAGAGAAGAAGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTAAGCATTGTAGGATTGAATTAGCTTCTGAGAGAAGAAGTGGT  550

seq1  GTAAGCCAGCCTAGCTCCTCCCCTGAATCCTTCTCCACCCATTCCCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCAGCCTAGCTCCTCCCCTGAATCCTTCTCCACCCATTCCCCCCA  600

seq1  CCGCAACCCCCATTCCCCTGCAAGTCCTCACTGCTGCAGTGACATACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAACCCCCATTCCCCTGCAAGTCCTCACTGCTGCAGTGACATACACA  650

seq1  GGGCAGCCCTGAGCACACATGAGTTCTCACTGTGTCAACTACACAACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCCCTGAGCACACATGAGTTCTCACTGTGTCAACTACACAACTCT  700

seq1  AACCCAAGCTAAGTCAATGCTGGCCCTGGGTCTCAAAGCTGCACACACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAGCTAAGTCAATGCTGGCCCTGGGTCTCAAAGCTGCACACACTG  750

seq1  GGCATTAGGTGGCTGTCTTTTTCTCTCTTTTTTGGTTTGGTTCAAAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAGGTGGCTGTCTTTTTCTCTCTTTTTTGGTTTGGTTCAAAACTG  800

seq1  AGGCAAACATTTTTAGTACAGCTCATGTGAATAAAATTACTTTTATAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAACATTTTTAGTACAGCTCATGTGAATAAAATTACTTTTATAGAT  850

seq1  GTGAGCTAAAGATGTAAATTCCTATACAGCAGTCCCACTCTGAGGAGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTAAAGATGTAAATTCCTATACAGCAGTCCCACTCTGAGGAGGTG  900

seq1  TCCTAGAATATAGAAAGCATACTTATATATAACAAACTCAAATGAAAAAA  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCTAGAATATAGAAAGCATACTTATATATAACAAACTC-AATGAAAAAA  949

seq1  AAGATGGCAGTGTATTGTTATGATAGCAATAGAAAGATACCCAGAAATGT  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGATGGCAGTGTA-TGTTATGATAGCAATAGAAAGATACCCAGAAATGT  998

seq1  CAGTGCTATATAGAGTAGCTGTTACATAAGCACTG-TTTTATATC-TGTA  1048
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  CAGTGCTATATAGAGTAGCTGTTACATAAGCACTGTTTTTATATCTTGTA  1048

seq1  CCTAAG-ATGTGTGGCACACAGAGAAGGTGAAAATTTTGTCTTATTTATC  1097
      ||| || |||||  ||| |||||||| |||||||||||||||||||||||
seq2  CCTTAGAATGTGGTGCAAACAGAGAA-GTGAAAATTTTGTCTTATTTATC  1097

seq1  TTTAAATTAGCATACAAAGGCATGGGTTTCATAATGACATATTCATAC  1145
      ||  || ||||| |||||| |||||| ||  |||||| ||||||||||
seq2  TT--AAATAGCA-ACAAAGCCATGGGGTTTCTAATGA-ATATTCATAC  1141

seq1: chr16_90719041_90719580
seq2: B6Ng01-160A13.g_61_601 (reverse)

seq1  CATCC-ATTTTTTTTTTTTTTTTTTTTTTTTGGTTTGGTTTTTCAAGCTA  49
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  CATCCAATTTTTTTTTTTTTTTTTTTTTATTGGTTTGGTTTTTCAAGCTA  50

seq1  GGGTTTCTCTGTGTAGCCCGAGCTGTCCTGGAACTCACTCTGTAGACCAG  99
      || |||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGATTTCTCTGTGTAGCCCGAGCTGTCTTGGAACTCACTCTGTAGACCAG  100

seq1  GCTGGCCTCGAACTCAAAAATCCACCTGCCTCTGCCTCCAGAGTGCTGGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTCGAACTCAAAAATCCACCTGCCTCTGCCTCCAGAGTGCTGGG  150

seq1  ATTAAAGGCATGCGCCACCACGCCCGGCTACATCTAATTGTTAAATGAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGCATGCGCCACCACGCCCGGCTACATCTAATTGTTAAATGAGA  200

seq1  CCACTAAGTGTAGAGTTCATACAGACATCACAGTTTGGATCTAAAATGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAGTGTAGAGTTCATACAGACATCACAGTTTGGATCTAAAATGAC  250

seq1  CCCCCTGCCGCCCCCCCCCCTCCTGCCGCCCCCCGGGCCTAGGAGCATGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGCCGCCCCCCCCCCTCCTGCCGCCCCCCGGGCCTAGGAGCATGC  300

seq1  TTCCAGTTACACTCTATCAGTCTCAGAATGCTCAGACACTAAGAGCTAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTACACTCTATCAGTCTCAGAATGCTCAGACACTAAGAGCTAGC  350

seq1  TCTGCAGAGTGCTGTGACAGGCCATCTCAGTTCCTAGAAGGGGGCTGGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAGTGCTGTGACAGGCCATCTCAGTTCCTAGAAGGGGGCTGGGC  400

seq1  AGAGCAGAGCACAGTGCATGCTCACTGAATATGTAGATTTCAAGGCCCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGAGCACAGTGCATGCTCACTGAATATGTAGATTTCAAGGCCCCA  450

seq1  GAATTTTTTTATCTCACTTAAATATGAATTTAGTTTGCAAACAAACAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTTTATCTCACTTAAATATGAATTTAGTTTGCAAACAAACAAAA  500

seq1  AAAAAAACCAAACAAATGAACGTTCAAGCACTTTTGAATTC  540
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCAAACAAATGAACGTTCAAGCACTTTTGAATTC  541