BAC Information

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BAC

Clone NameB6Ng01-160E16
Chromosome16 (Build37)
Map Location 44,693,216 - 44,694,387
singlet/doubletsinglet
Overlap genenone
Upstream geneDrd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731
Downstream geneBC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160E16.bB6Ng01-160E16.g
ACCDH953707DH953708
length1,1441,131
definitionDH953707|Mus musculus domesticus DNA, BAC clone: B6Ng01-160E16, 5' end.DH953708|Mus musculus domesticus DNA, BAC clone: B6Ng01-160E16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataaggaattaacacttgctctgcctcactctggaattttttgg
atcagttagatggcacataagaagaggtgtttcataaaggcacctcttca
ggcatgtttttcttatagactaggtaacatgactgtcctctgaatcctct
tgggggtcaatctaggagggaacaggattacatggtaactctgcatttag
ctttcatgaaaccttcatataccttcctcttaagtactctaaaattatgg
agaactctaaagagcttttatttgggtgatatctataattaccttatatg
tttttaaaaatttaaagcttagaacttcaataaacagtccattgatacga
taccaaaacatagtaacagtttttgaaaggtaaattacaatgtgaaatgg
atactatattgattctttctttattttgttgaaatccatttgttaatcct
gaactttgaaagctgtttttattgatttgtaacatttgtaacatatttgt
aacattatatggtggtcacttgcaaaatactagttcactgagttatgaaa
ttcatcgttattcatctgaattcctgacttctttcagcgttaaaaaacga
cgaatttcattcaaggttaaacgtcacatttgctagtatcagaaattatt
acgatgtcaaagcttatgatggtggatacgtgttttccaaatctcatttt
cagtctgctcttccaggggacacaggttcaatttccaggtcccatatgga
agcccaaccatctgtctttccagttctagggttctgacgccctcttctgg
cctctgagggtattgggcacacacatgggtacaggcatacatgcagcaaa
acacctatacacatgaaaagaaaaaaaaaaaacaataacagtggtgacag
atgtgcttccaatatcaaagcatgccagcaccctagtgctcagcatatag
ttgatgcagcaacactctctgatgctatacctgtacaagccgccagctct
ctgtctacatctgtcatcaccttcagtaacatcttgtacatttcaaagct
ttttgtctataaaaatgggcacaattttgagatctttttattgcattaac
aactgtaagtaggccgatccacacagcaactgagtcgtgtgatg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccagaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccgataagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaacctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaggaatgaatttatgaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgcaaaacacttgaaactgaa
gaagaaggaagtccaaagtgtggacactttgccccttcttagaattggga
acaatcacccatggaaggagttacagagcaaagtttttagctaagacaaa
aggatggaccatctagagactgccatatctggggatccatcccataatca
gcttccaaacgctgacaccattgcatacactagcaagattttgctgaaag
gacccagatatagctgtctcttgtgagactatgccgggcctagcaaacac
atagtggatgctcacagtcagctatggatggatcacaggccccatggaga
gctatagaagtaccagagttaaggtctgcaccctatagtgaacataatat
gactaccagtacccccagagctgggtctctagctacatatgtatcagaag
atgtctagtcacattggtcatgtactttactgctcagtacaggaatgtca
ggaacaaaaatgggatggtgtggtagggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_44693216_44694387
seq2: B6Ng01-160E16.b_48_1191

seq1  GAATTCATAAGGAATTAACACTTGCTCTGCCTCACTCTGGAATTTTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGGAATTAACACTTGCTCTGCCTCACTCTGGAATTTTTTGG  50

seq1  ATCAGTTAGATGGCACATAAGAAGAGGTGTTTCATAAAGGCACCTCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTAGATGGCACATAAGAAGAGGTGTTTCATAAAGGCACCTCTTCA  100

seq1  GGCATGTTTTTCTTATAGACTAGGTAACATGACTGTCCTCTGAATCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTTTTTCTTATAGACTAGGTAACATGACTGTCCTCTGAATCCTCT  150

seq1  TGGGGGTCAATCTAGGAGGGAACAGGATTACATGGTAACTCTGCATTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTCAATCTAGGAGGGAACAGGATTACATGGTAACTCTGCATTTAG  200

seq1  CTTTCATGAAACCTTCATATACCTTCCTCTTAAGTACTCTAAAATTATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGAAACCTTCATATACCTTCCTCTTAAGTACTCTAAAATTATGG  250

seq1  AGAACTCTAAAGAGCTTTTATTTGGGTGATATCTATAATTACCTTATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTAAAGAGCTTTTATTTGGGTGATATCTATAATTACCTTATATG  300

seq1  TTTTTAAAAATTTAAAGCTTAGAACTTCAATAAACAGTCCATTGATACGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAATTTAAAGCTTAGAACTTCAATAAACAGTCCATTGATACGA  350

seq1  TACCAAAACATAGTAACAGTTTTTGAAAGGTAAATTACAATGTGAAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAACATAGTAACAGTTTTTGAAAGGTAAATTACAATGTGAAATGG  400

seq1  ATACTATATTGATTCTTTCTTTATTTTGTTGAAATCCATTTGTTAATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATATTGATTCTTTCTTTATTTTGTTGAAATCCATTTGTTAATCCT  450

seq1  GAACTTTGAAAGCTGTTTTTATTGATTTGTAACATTTGTAACATATTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTGAAAGCTGTTTTTATTGATTTGTAACATTTGTAACATATTTGT  500

seq1  AACATTATATGGTGGTCACTTGCAAAATACTAGTTCACTGAGTTATGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATATGGTGGTCACTTGCAAAATACTAGTTCACTGAGTTATGAAA  550

seq1  TTCATCGTTATTCATCTGAATTCCTGACTTCTTTCAGCGTTAAAAAACGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCGTTATTCATCTGAATTCCTGACTTCTTTCAGCGTTAAAAAACGA  600

seq1  CGAATTTCATTCAAGGTTAAACGTCACATTTGCTAGTATCAGAAATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTTCATTCAAGGTTAAACGTCACATTTGCTAGTATCAGAAATTATT  650

seq1  ACGATGTCAAAGCTTATGATGGTGGATACGTGTTTTCCAAATCTCATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGTCAAAGCTTATGATGGTGGATACGTGTTTTCCAAATCTCATTTT  700

seq1  CAGTCTGCTCTTCCAGGGGACACAGGTTCAATTTCCAGGTCCCATATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCTCTTCCAGGGGACACAGGTTCAATTTCCAGGTCCCATATGGA  750

seq1  AGCCCAACCATCTGTCTTTCCAGTTCTAGGGGTTCTGACGCCCTCTTCTG  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCCCAACCATCTGTCTTTCCAGTTCTA-GGGTTCTGACGCCCTCTTCTG  799

seq1  GCCTCTGAGGGTATTGGGCACACACATGGGTACAGGCATACATGCAGGCA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCCTCTGAGGGTATTGGGCACACACATGGGTACAGGCATACATGCA-GCA  848

seq1  AAACACCTATACACATGAAAAAGAAAAAAAAAAAAACAATAACAGTGGTG  900
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  AAACACCTATACACATGAAAA--GAAAAAAAAAAAACAATAACAGTGGTG  896

seq1  ACAAGATGTGCTTCCAATATCAAAGCCATGCCAGCACCCTAGTTGCTCAG  950
      || |||||||||||||||||||||| |||||||||||||||| |||||| 
seq2  AC-AGATGTGCTTCCAATATCAAAG-CATGCCAGCACCCTAG-TGCTCA-  942

seq1  GCATATAGTTTGATGCCAGCAACACTCTCTGAATGCTATACCTGTACAAG  1000
      |||||||| |||||| ||||||||||||||| ||||||||||||||||||
seq2  GCATATAG-TTGATG-CAGCAACACTCTCTG-ATGCTATACCTGTACAAG  989

seq1  CCCGCCCAGCTCTCTGTCTTACATCCTGTTCCATCACCTTCAGTACACAT  1050
      ||   ||||||||||||| ||||| ||||  |||||||||||||| ||| 
seq2  CC--GCCAGCTCTCTGTC-TACAT-CTGT--CATCACCTTCAGTA-ACA-  1031

seq1  TCTTGTACATTTTCAAAGCTTTCTGTCTATAAAAATGGGCACATTTGTGA  1100
      ||||||||| |||||||||||| |||||||||||||||||||| || |||
seq2  TCTTGTACA-TTTCAAAGCTTTTTGTCTATAAAAATGGGCACAATTTTGA  1080

seq1  GATCCTTTTTATATGCATGTACCAACTCTGTATGTTAGTCTCTGATCCA-  1149
      ||| |||||||| ||||| || |||  ||||| ||  |   | |||||| 
seq2  GAT-CTTTTTAT-TGCAT-TAACAA--CTGTAAGTAGG---CCGATCCAC  1122

seq1  ACAGCAACTTGAGTCGTGTGATG  1172
      |||||||| ||||||||||||||
seq2  ACAGCAAC-TGAGTCGTGTGATG  1144