BAC Information

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BAC

Clone NameB6Ng01-160G06
Chromosome16 (Build37)
Map Location 91,182,641 - 91,289,055
singlet/doubletdoublet
Overlap geneOlig2, Olig1
Upstream geneLOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2
Downstream geneIfnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160G06.bB6Ng01-160G06.g
ACCDH953775DH953776
length1,149784
definitionDH953775|Mus musculus domesticus DNA, BAC clone: B6Ng01-160G06, 5' end.DH953776|Mus musculus domesticus DNA, BAC clone: B6Ng01-160G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,182,641 - 91,183,789)(91,288,276 - 91,289,055)
sequence
gaattctttatggttaaaaaacaaaatgaagccagctttgaacacactgt
gttggcaggttacggcaaagcatgaagtccctactacagtcttgcttggt
aacatctgggttgatggaagtttgaggattgcttgtatatcctgaaagat
ttactccgtagtcccaaggctgatcactcacacacagaggtggccaataa
atagccatttagactctggccctgctaccttgtaactctctacaatcatt
aaattctattcggccatttaacggttaacactgctaccgcttttatgtat
ttattttctgagaactccctttaacagcatcttatatgatgttatagttt
gaatatgagatctttccccacaggcttttatatttgaacactttgtcccc
agggggcttctattattttgggaagttgtgaggtggaacttacatggagg
aggaaatgagtcacgaggggcaggtcttgagggttatagccctaacacac
ttcctgcctcatctctagcttccaggttggcactgggtaacaagctgctg
ccacgttcctggcaccataggcacaccctctgccctgtcttcactccctt
gatggactcttcgccccttcaaccatgaggtgagataaatttcctcccct
gagtggtttcttccaggtactttggtaacaaccttaagaaagcgaagaca
caagcagtggcccacttatcaaaattaagaaattacccttacatactgcg
cagactattcacgcagtttccagagcttggtcacctcgctggtgtctcca
ggactattcacgcaattccagagcctgatcacctccctggtgtctccacg
gatgtccactgtctgttcaagaaccacatgcagatcctatagtagatcta
gaggtggcttgtcttagaaccacgtgcagatcccgaggtccgttctagct
tgtctcgtgtctcctcccccctgcacccagtggctggtctattgactcaa
gccttgctgctaagcctggctagtctgcggactacccttgcttgggttgt
gaattatgctctttatgattagaattcggtcagtaactattgggaaagaa
gcacacaaagacggatttgtcttcttgagtcctctcacgtcattggatc
gaattcatttcagtcttgagaggtagaaactaaagacaagtttgagtgtt
gaagacacagcccgagtttatagcttaggaaaggagtttcatccccagaa
ggcaaatgagagcagccgagtgttttctattattgtcttcattacctctg
ctcacatcactgttcctgtctttctatttggtcatcagtacgtctctgta
tgcataagactaacatggcttagagctggtgttctctgctcaggcctgct
tgctcacgtgtagtatgaattaggagcccaaggacctcaaatgcgtttgc
cgggaggaaggggtagggagaacagagtgtggagaagtgaagactgtgcc
atcaggggacttttctgcttagcacgaattgcccctgccatgcagaacct
agcttctgtggcatagcttctcattttgccagagaatctcgatatctgaa
ttttcaggcacttttccaatgatcacatgtagccagtgaattcatttaaa
accagtagcactctgcaaatgcaagctgcctacaccctgcaggctccccc
tgccctgaggggggagggagaggaacagagcagtgtttctcaacctgtgg
gttgggaccccctctgcaggggttgcagaagatcgtctgaaaacacagat
atttacaattcataacagtagcaaaattacagttacaaagtagcaacgaa
aatatttttatgggttgggtgtcaccactacataaaagaactgtatttaa
acgggcgaagcagttggaaggctgagaaccgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_91182641_91183789
seq2: B6Ng01-160G06.b_44_1192

seq1  GAATTCTTTATGGTTAAAAAACAAAATGAAGCCAGCTTTGAACACACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATGGTTAAAAAACAAAATGAAGCCAGCTTTGAACACACTGT  50

seq1  GTTGGCAGGTTACGGCAAAGCATGAAGTCCCTACTACAGTCTTGCTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAGGTTACGGCAAAGCATGAAGTCCCTACTACAGTCTTGCTTGGT  100

seq1  AACATCTGGGTTGATGGAAGTTTGAGGATTGCTTGTATATCCTGAAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTGGGTTGATGGAAGTTTGAGGATTGCTTGTATATCCTGAAAGAT  150

seq1  TTACTCCGTAGTCCCAAGGCTGATCACTCACACACAGAGGTGGCCAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCGTAGTCCCAAGGCTGATCACTCACACACAGAGGTGGCCAATAA  200

seq1  ATAGCCATTTAGACTCTGGCCCTGCTACCTTGTAACTCTCTACAATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCATTTAGACTCTGGCCCTGCTACCTTGTAACTCTCTACAATCATT  250

seq1  AAATTCTATTCGGCCATTTAACGGTTAACACTGCTACCGCTTTTATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTATTCGGCCATTTAACGGTTAACACTGCTACCGCTTTTATGTAT  300

seq1  TTATTTTCTGAGAACTCCCTTTAACAGCATCTTATATGATGTTATAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTGAGAACTCCCTTTAACAGCATCTTATATGATGTTATAGTTT  350

seq1  GAATATGAGATCTTTCCCCACAGGCTTTTATATTTGAACACTTTGTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGAGATCTTTCCCCACAGGCTTTTATATTTGAACACTTTGTCCCC  400

seq1  AGGGGGCTTCTATTATTTTGGGAAGTTGTGAGGTGGAACTTACATGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCTTCTATTATTTTGGGAAGTTGTGAGGTGGAACTTACATGGAGG  450

seq1  AGGAAATGAGTCACGAGGGGCAGGTCTTGAGGGTTATAGCCCTAACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGAGTCACGAGGGGCAGGTCTTGAGGGTTATAGCCCTAACACAC  500

seq1  TTCCTGCCTCATCTCTAGCTTCCAGGTTGGCACTGGGTAACAAGCTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCTCATCTCTAGCTTCCAGGTTGGCACTGGGTAACAAGCTGCTG  550

seq1  CCACGTTCCTGGCACCATAGGCACACCCTCTGCCCTGTCTTCACTCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTTCCTGGCACCATAGGCACACCCTCTGCCCTGTCTTCACTCCCTT  600

seq1  GATGGACTCTTCGCCCCTTCAACCATGAGGTGAGATAAATTTCCTCCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACTCTTCGCCCCTTCAACCATGAGGTGAGATAAATTTCCTCCCCT  650

seq1  GAGTGGTTTCTTCCAGGTAC-TTGGTAACAACCTTAAGAAAGCGAAGACA  699
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGTGGTTTCTTCCAGGTACTTTGGTAACAACCTTAAGAAAGCGAAGACA  700

seq1  CAAGCAGTGGCCCACTTATCAAAATTAAGAAATTACCCTTACATACTGCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGTGGCCCACTTATCAAAATTAAGAAATTACCCTTACATACTGCG  750

seq1  CAGGACTATTCACGCAG-TTCCAGAGCTTGGTCACCTCGCTGGTGTCTCC  798
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CA-GACTATTCACGCAGTTTCCAGAGCTTGGTCACCTCGCTGGTGTCTCC  799

seq1  AGGACTATTCACGCAATTCCAGAGCCTGATCACCTCCCTGGTGTCTCCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTATTCACGCAATTCCAGAGCCTGATCACCTCCCTGGTGTCTCCAC  849

seq1  GGATGTCCACTGTCTGTTCAAGAACCACATGCAGGATCCTATAGTAGATC  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGATGTCCACTGTCTGTTCAAGAACCACATGCA-GATCCTATAGTAGATC  898

seq1  TAGAGGTGGCTTGTC-TAGAACCACGTGCAAGATCCCGAGGTCCG-TCTA  946
      ||||||||||||||| ||||||||||||| ||||||||||||||| ||||
seq2  TAGAGGTGGCTTGTCTTAGAACCACGTGC-AGATCCCGAGGTCCGTTCTA  947

seq1  GC-TGTCTCGTGTCTCCTCCCCCCTGCACCCAGTGGCTGGTCCTATGACT  995
      || |||||||||||||||||||||||||||||||||||||||   |||||
seq2  GCTTGTCTCGTGTCTCCTCCCCCCTGCACCCAGTGGCTGGTCTATTGACT  997

seq1  CAGGCCTTGCTGCTAAGCCTGGCTAGTTCTGCGGACTACCCTTGCCTGGG  1045
      || ||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  CAAGCCTTGCTGCTAAGCCTGGCTAG-TCTGCGGACTACCCTTGCTTGGG  1046

seq1  TTTGTGAA-TATGCTC-TTATGATTAG-ATTCGGTCAAGTATC-ATTGGG  1091
       ||||||| ||||||| |||||||||| |||||||| |||| | ||||||
seq2  -TTGTGAATTATGCTCTTTATGATTAGAATTCGGTC-AGTAACTATTGGG  1094

seq1  AAGGAAGCCACACAAAGACGGATGTGTCCTTCTGAAGGCCTCTCACGTCA  1141
      || |||| ||||||||||||||| ||| |||||  || ||||||||||||
seq2  AAAGAAG-CACACAAAGACGGATTTGT-CTTCTTGAGTCCTCTCACGTCA  1142

seq1  TCTGGATC  1149
      | ||||||
seq2  T-TGGATC  1149

seq1: chr16_91288276_91289055
seq2: B6Ng01-160G06.g_67_849 (reverse)

seq1  AGCGGTTCTCAGCCTTCCAACTGCTTCGACCGTTT-AATACAGTTC-TTT  48
      |||||||||||||||||||||||||||| |||||| |||||||||| |||
seq2  AGCGGTTCTCAGCCTTCCAACTGCTTCGCCCGTTTAAATACAGTTCTTTT  50

seq1  ATGTTGTGGTGACACCCAA-CCATAAAATTATTTTCGTTGCTACTTTGTA  97
      |||| |||||||||||||| |||||||| |||||||||||||||||||||
seq2  ATGTAGTGGTGACACCCAACCCATAAAAATATTTTCGTTGCTACTTTGTA  100

seq1  ACTGTAATTTTGCTACTGTTATGAATTGTAAATATCTGTGTTTTCAGACG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAATTTTGCTACTGTTATGAATTGTAAATATCTGTGTTTTCAGACG  150

seq1  ATCTTCTGCAACCCCTGCAGAGGGGGTCCCAACCCACAGGTTGAGAAACA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGCAACCCCTGCAGAGGGGGTCCCAACCCACAGGTTGAGAAACA  200

seq1  CTGCTCTGTTCCTCTCCCTCCCCCCTCAGGGCAGGGGGAGCCTGCAGGGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGTTCCTCTCCCTCCCCCCTCAGGGCAGGGGGAGCCTGCAGGGT  250

seq1  GTAGGCAGCTTGCATTTGCAGAGTGCTACTGGTTTTAAATGAATTCACTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCAGCTTGCATTTGCAGAGTGCTACTGGTTTTAAATGAATTCACTG  300

seq1  GCTACATGTGATCATTGGAAAAGTGCCTGAAAATTCAGATATCGAGATTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATGTGATCATTGGAAAAGTGCCTGAAAATTCAGATATCGAGATTC  350

seq1  TCTGGCAAAATGAGAAGCTATGCCACAGAAGCTAGGTTCTGCATGGCAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCAAAATGAGAAGCTATGCCACAGAAGCTAGGTTCTGCATGGCAGG  400

seq1  GGCAATTCGTGCTAAGCAGAAAAGTCCCCTGATGGCACAGTCTTCACTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTCGTGCTAAGCAGAAAAGTCCCCTGATGGCACAGTCTTCACTTC  450

seq1  TCCACACTCTGTTCTCCCTACCCCTTCCTCCCGGCAAACGCATTTGAGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTCTGTTCTCCCTACCCCTTCCTCCCGGCAAACGCATTTGAGGT  500

seq1  CCTTGGGCTCCTAATTCATACTACACGTGAGCAAGCAGGCCTGAGCAGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGCTCCTAATTCATACTACACGTGAGCAAGCAGGCCTGAGCAGAG  550

seq1  AACACCAGCTCTAAGCCATGTTAGTCTTATGCATACAGAGACGTACTGAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAGCTCTAAGCCATGTTAGTCTTATGCATACAGAGACGTACTGAT  600

seq1  GACCAAATAGAAAGACAGGAACAGTGATGTGAGCAGAGGTAATGAAGACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAATAGAAAGACAGGAACAGTGATGTGAGCAGAGGTAATGAAGACA  650

seq1  ATAATAGAAAACACTCGGCTGCTCTCATTTGCCTTCTGGGGATGAAACTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGAAAACACTCGGCTGCTCTCATTTGCCTTCTGGGGATGAAACTC  700

seq1  CTTTCCTAAGCTATAAACTCGGGCTGTGTCTTCAACACTCAAACTTGTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTAAGCTATAAACTCGGGCTGTGTCTTCAACACTCAAACTTGTCT  750

seq1  TTAGTTTCTACCTCTCAAGACTGAAATGAATTC  780
      |||||||||||||||||||||||||||||||||
seq2  TTAGTTTCTACCTCTCAAGACTGAAATGAATTC  783