BAC Information

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BAC

Clone NameB6Ng01-160G12
Chromosome16 (Build37)
Map Location 52,269,566 - 52,270,685
singlet/doubletsinglet
Overlap geneAlcam
Upstream geneLOC627543, Cblb
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160G12.bB6Ng01-160G12.g
ACCDH953787DH953788
length1,112792
definitionDH953787|Mus musculus domesticus DNA, BAC clone: B6Ng01-160G12, 5' end.DH953788|Mus musculus domesticus DNA, BAC clone: B6Ng01-160G12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccatggtgttagatgataattcagtcccagtgctcagatagga
caaagtttgaaaatgactgctttaaatattgaaatagctgaactatctca
tgccacaggttagcgtttaaaaaaaaatctgttcagttaaaatagaagaa
taaggatgggttctctctaggttctctctccaaatcaatactcactgaat
tgcattgtgagaagtcagtgattgtattttaaagttaattttgtttagtt
cttctctctagctaatccactgggcctttaagtcagagaccattatcttt
tgaaaattgttttgtcctataaatttccagctattatattcaaagcatac
taatgtaaggattccaaccgatgaagaaataaacaattggcagcaggtca
gctaacatcctgtctaaaagtgaaccttactctaggtcagtcctgatttt
aaggttgccatggtaacatagcaatgggcatagtaacaggactgaaaatg
gtgtctaattttccaataaatcatggttttcaaaatgttttctctctctc
aaaaatatataaggtaggatttcaatattaatagttactttaattttctc
taagatgatttcatctattttcattattattcaaaatcaatgagagaaag
aaaacttttgcaacctgattttattaattctcacatttttagtacaaatt
tgttaattggccaaatttgtggcatttctgtataaaataggggtagaata
aaaatataacgaagttgtaatgcaaactgacaggcccacaatgacaatgt
ggattggtcacactaaaaatttatcagatgtatataccttttacaaagtg
ttttaaataatcattgaattatctgactctagatccatagtatggattaa
gtatgaccaattggtttcttattctcccttgctctctggaggtttcctct
cctgggaaagtggtctgagtgctatatatgaagtgacttaaactgtgaag
acagggtagtagagatggaaaccagtaaaaagaaaccggacctcttggcg
atgatattcaaatgccaacaaaagcggtggaacttaccatggatggcagt
acaggagatgga
gaattctatcttggtgatatataggaaatgggagtctaaaatgtaaaata
ttttattattctcaaagacaaaatgcctagaagtatagacacagttctaa
gatcttttgagggatctataatatatttgaaatatgtatgcattcatgct
tgtacatatgttggtgtgtgagcatgtattttagtttacatgttgtgtgt
atacatacatgtgcattattttattaaaaatagattccttttctataatt
atgttctgattatagttagctctccctctactccatccagttcctcctta
cctccccttccctgcaggttcactttctttctgtcttattagaaaagagc
aggtttctaagagacagcaaccagacatgacaatatagtaagatgaagca
aaaacatttcccctcaaagttgaacacagcaaacaaagaggaggaaaagt
gttctaagagcagagaaaagagtcagaggctcacttgttctcatagtcag
gagtcacaaaaatactgaattgatagctgtaatacatatgcagaggacct
ggtgtggacccatatcagccctacacttgcttcttcagtctctgtgagcc
tttatgcaccttgcttagttaatgcagagggccaagtttttctggtgtcc
tccatactctccaaccctagcaatcattttcctctacttctacaggattt
catgagcactgaggggatgaatttgaggggagagatttgatagagtcttt
gatgctctctctctctctctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_52269566_52270685
seq2: B6Ng01-160G12.b_46_1157

seq1  GAATTCTCCATGGTGTTAGATGATAATTCAGTCCCAGTGCTCAGATAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATGGTGTTAGATGATAATTCAGTCCCAGTGCTCAGATAGGA  50

seq1  CAAAGTTTGAAAATGACTGCTTTAAATATTGAAATAGCTGAACTATCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTGAAAATGACTGCTTTAAATATTGAAATAGCTGAACTATCTCA  100

seq1  TGCCACAGGTTAGCGTTTAAAAAAAAATCTGTTCAGTTAAAATAGAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGGTTAGCGTTTAAAAAAAAATCTGTTCAGTTAAAATAGAAGAA  150

seq1  TAAGGATGGGTTCTCTCTAGGTTCTCTCTCCAAATCAATACTCACTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATGGGTTCTCTCTAGGTTCTCTCTCCAAATCAATACTCACTGAAT  200

seq1  TGCATTGTGAGAAGTCAGTGATTGTATTTTAAAGTTAATTTTGTTTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTGAGAAGTCAGTGATTGTATTTTAAAGTTAATTTTGTTTAGTT  250

seq1  CTTCTCTCTAGCTAATCCACTGGGCCTTTAAGTCAGAGACCATTATCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCTAGCTAATCCACTGGGCCTTTAAGTCAGAGACCATTATCTTT  300

seq1  TGAAAATTGTTTTGTCCTATAAATTTCCAGCTATTATATTCAAAGCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTGTTTTGTCCTATAAATTTCCAGCTATTATATTCAAAGCATAC  350

seq1  TAATGTAAGGATTCCAACCGATGAAGAAATAAACAATTGGCAGCAGGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAAGGATTCCAACCGATGAAGAAATAAACAATTGGCAGCAGGTCA  400

seq1  GCTAACATCCTGTCTAAAAGTGAACCTTACTCTAGGTCAGTCCTGATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACATCCTGTCTAAAAGTGAACCTTACTCTAGGTCAGTCCTGATTTT  450

seq1  AAGGTTGCCATGGTAACATAGCAATGGGCATAGTAACAGGACTGAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGCCATGGTAACATAGCAATGGGCATAGTAACAGGACTGAAAATG  500

seq1  GTGTCTAATTTTCCAATAAATCATGGTTTTCAAAATGTTTTCTCTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAATTTTCCAATAAATCATGGTTTTCAAAATGTTTTCTCTCTCTC  550

seq1  AAAAATATATAAGGTAGGATTTCAATATTAATAGTTACTTTAATTTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATATAAGGTAGGATTTCAATATTAATAGTTACTTTAATTTTCTC  600

seq1  TAAGATGATTTCATCTATTTTCATTATTATTCAAAATCAATGAGAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGATTTCATCTATTTTCATTATTATTCAAAATCAATGAGAGAAAG  650

seq1  AAAACTTTTGCAACCTGATTTTATTAATTCTCACATTTTTAGTACAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTTGCAACCTGATTTTATTAATTCTCACATTTTTAGTACAAATT  700

seq1  TGTTAATTGGCCAAATTTGTGGCATTTCTGTATAAAATAGGGGTAGAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATTGGCCAAATTTGTGGCATTTCTGTATAAAATAGGGGTAGAATA  750

seq1  AAAATATAACGAAGTTGTAATGCAAACTGACAGGCCCACAATGACAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAACGAAGTTGTAATGCAAACTGACAGGCCCACAATGACAATGT  800

seq1  GGATTGGTCACACTAAAAATTTATCAGATGTATATACCTTTTACAAAAGT  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGATTGGTCACACTAAAAATTTATCAGATGTATATACCTTTTAC-AAAGT  849

seq1  GTTTTAAAATAATCATTGAATTATCTGACTCTAGATCCATAGTATGGATT  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTT-AAATAATCATTGAATTATCTGACTCTAGATCCATAGTATGGATT  898

seq1  AAGTATGACCAATTGGTTTCTTATTCTCCCTTGCTCTCTGGAGGTTTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGACCAATTGGTTTCTTATTCTCCCTTGCTCTCTGGAGGTTTCCT  948

seq1  CTCCTGGGAAAAGTGTCTGAGTGCTAATATATGAAGTGACTTAAACTGTG  1000
      |||||||||||   ||||||||||| ||||||||||||||||||||||||
seq2  CTCCTGGGAAAGTGGTCTGAGTGCT-ATATATGAAGTGACTTAAACTGTG  997

seq1  AAGACAAGGGTAGTAGAAGAATGGAAACCAGGTAAAAAAGAAAACGGAAC  1050
      ||||| |||||||||||   |||||||||||   ||||||||| ||| ||
seq2  AAGAC-AGGGTAGTAGA--GATGGAAACCAG--TAAAAAGAAACCGG-AC  1041

seq1  CTCATGGCGATGATATCAAAATGCCAAACAAAAGC-GTGAAACTTACCAT  1099
      ||| ||||||||||||  ||||||| ||||||||| ||| ||||||||||
seq2  CTCTTGGCGATGATATTCAAATGCC-AACAAAAGCGGTGGAACTTACCAT  1090

seq1  -GAT-GCAGTACAGGGAGATGGA  1120
       ||| |||||||| |||||||||
seq2  GGATGGCAGTACA-GGAGATGGA  1112