BAC Information

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BAC

Clone NameB6Ng01-160I16
Chromosome16 (Build37)
Map Location 32,048,492 - 32,049,592
singlet/doubletsinglet
Overlap genePak2
Upstream geneAI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5
Downstream genePigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160I16.bB6Ng01-160I16.g
ACCDH953887DH953888
length1,0341,074
definitionDH953887|Mus musculus domesticus DNA, BAC clone: B6Ng01-160I16, 5' end.DH953888|Mus musculus domesticus DNA, BAC clone: B6Ng01-160I16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactgcatagaccaagctggcctcaaactcagaaatctgcctccc
aagtgctggaattaaaggtgtgctccaccactgccttacaaaaatttatg
gtttttttttttttttttttttttttttggaatacccccatagatttgtg
gccatcagtcgcgttaagaacaacgccccaagcccctcacatgcagagga
catgatctgtcgtcacatagtctcaaaacagatttccattttaatgaagt
tcctaaaggcctggagagcttagccaataagcttgcctccccagatactc
ctccctgcaaaaggtatttaacctcaggcccaccctgaaaagtggggtac
agttttacacatacactttctgccatgacaataaatgccttaaaaccatg
gactgcctcttttcatcgagatctgccatagggagccacagagatgccct
ttgccttcagagctgctatttaaactccagtagaaggcctctctgcactc
ccagccaccaagccaagccaagccaagaactccccctgcaggactaacca
gagtccctcttcctcccagccccgagccagatccagtctgtggtgcccag
attccattctcagccatcttttcagccccctggttacaaattttgatatt
atcaacagtactgctacgaagttatatacagctttgcataactatagtta
atgttttaaatttttgagtagagttatttaggaggagcattagtaggcta
acccaataagtcttatggagaatagcgtttccacagcaggccatccctcc
atggagcaggagggtgtccatctttctgtatcctactatcctctcctcca
tctctcttcacatctttctctctttaatactagcatctttacatgaactg
aatatgattgatgctaggatattgaatgcgttgatcgatactatcagact
agagcaagcagtgattctggatcagcactgtccataaggatcagtaccga
cataggacttcaaacaaaagcgtaactccgctaa
gaattccagaacagaaaagaggaagaaagaaaacattcatctacttgaac
agaagactcttcttttcttgtgatttacaatagcttcaagcgagagaaac
caaacttgttctgtcacacacaaggtatttattctcagggaagtaggtga
agtatatactagtattaacattaatactggatttctgggcaagaaagatg
ttcacacatcatctttgtaactcatcggatatgaatatgcacacaggctg
aattatggagtgtaaaactgcctcagttgatgactgccccaccaactcaa
cacctgctatatgactaagctcactgccattttcattattaaaactacca
aactggttgagggctcctgcaaagcccgacagtttcaaggcagtcagtct
tagaccttgtttctgtatggctattaccagtacctcaaatagaaaggtag
ccagctctcttgtcctgactgaaattctgcaatgattccccagggggaaa
aaaaaatctcaactccataccacagaatactaggccctttgtgaccaaat
cgttcccaccttttctgctgtgtgcagttctgtgtgaatatcacacatgc
ctgtcattatcaggtgccctgctgttaagtcacattagcctgcagtaagt
tccttgagtgcacatgctcttatggcctggccattcttctctaggcacag
aacacacttagaatgctgcttcattcccactctttagtctcaggctgatt
tcatttctgtaggaagccctcccaatattcaattagtcaggcaccttaca
ctagcactgtggcacttttcatagctcacattacaagctacacatttccc
caccctgctgaaatgaacgtagggtctcaccatatgctaggcactatgtt
acccatggtatatagtcctagctcactagctttggctagtatcataaggg
agagacactgctgtgcttatcatttactctagtgactcaaacgagttatg
caacattagtagacacaaaggatcccttatggactgttataaaggtatcc
atgggttgtgtcaacctgacaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_32048492_32049592
seq2: B6Ng01-160I16.g_66_1139

seq1  GAATTCCAGAACAGAAAAGAGGAAGAAAGAAAACATTCATCTACTTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACAGAAAAGAGGAAGAAAGAAAACATTCATCTACTTGAAC  50

seq1  AGAAGACTCTTCTTTTCTTGTGATTTACAATAGCTTCAAGCGAGAGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTCTTCTTTTCTTGTGATTTACAATAGCTTCAAGCGAGAGAAAC  100

seq1  CAAACTTGTTCTGTCACACACAAGGTATTTATTCTCAGGGAAGTAGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGTTCTGTCACACACAAGGTATTTATTCTCAGGGAAGTAGGTGA  150

seq1  AGTATATACTAGTATTAACATTAATACTGGATTTCTGGGCAAGAAAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATACTAGTATTAACATTAATACTGGATTTCTGGGCAAGAAAGATG  200

seq1  TTCACACATCATCTTTGTAACTCATCGGATATGAATATGCACACAGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACATCATCTTTGTAACTCATCGGATATGAATATGCACACAGGCTG  250

seq1  AATTATGGAGTGTAAAACTGCCTCAGTTGATGACTGCCCCACCAACTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGGAGTGTAAAACTGCCTCAGTTGATGACTGCCCCACCAACTCAA  300

seq1  CACCTGCTATATGACTAAGCTCACTGCCATTTTCATTATTAAAACTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTATATGACTAAGCTCACTGCCATTTTCATTATTAAAACTACCA  350

seq1  AACTGGTTGAGGGCTCCTGCAAAGCCCGACAGTTTCAAGGCAGTCAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTGAGGGCTCCTGCAAAGCCCGACAGTTTCAAGGCAGTCAGTCT  400

seq1  TAGACCTTGTTTCTGTATGGCTATTACCAGTACCTCAAATAGAAAGGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTTGTTTCTGTATGGCTATTACCAGTACCTCAAATAGAAAGGTAG  450

seq1  CCAGCTCTCTTGTCCTGACTGAAATTCTGCAATGATTCCCCAGGGGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCTCTTGTCCTGACTGAAATTCTGCAATGATTCCCCAGGGGGAAA  500

seq1  AAAAAATCTCAACTCCATACCACAGAATACTAGGCCCTTTGTGACCAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCTCAACTCCATACCACAGAATACTAGGCCCTTTGTGACCAAAT  550

seq1  CGTTCCCACCTTTTCTGCTGTGTGCAGTTCTGTGTGAATATCACACATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCCACCTTTTCTGCTGTGTGCAGTTCTGTGTGAATATCACACATGC  600

seq1  CTGTCATTATCAGGTGCCCTGCTGTTAAGTCACATTAGCCTGCAGTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTATCAGGTGCCCTGCTGTTAAGTCACATTAGCCTGCAGTAAGT  650

seq1  TCCTTGAGTGCACATGCTCTTATGGCCTGGCCATTCTTCTCTAGGCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGTGCACATGCTCTTATGGCCTGGCCATTCTTCTCTAGGCACAG  700

seq1  AACACACTTAGAATGCTGCTTCATTCCCACTCTTTAGTCTCAAGCTGATT  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACACACTTAGAATGCTGCTTCATTCCCACTCTTTAGTCTCAGGCTGATT  750

seq1  TCATTTCTGTAGGAAGCCCTCCCAAATATTCAAATTAGTCAGGCACCTTA  800
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  TCATTTCTGTAGGAAGCCCTCCC-AATATTC-AATTAGTCAGGCACCTTA  798

seq1  CACTAGCACTGTGGCACTTTTCATAGCTCACAATTACAAGCTACAACATT  850
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  CACTAGCACTGTGGCACTTTTCATAGCTCAC-ATTACAAGCTAC-ACATT  846

seq1  TCCCCACCCTGCTGAAATGAACGTAGGGTCTCACCATATGCTAGGCACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCCTGCTGAAATGAACGTAGGGTCTCACCATATGCTAGGCACTA  896

seq1  TGTTAACCCATGGGTTATATAGTCCTAGCTCCACTAGCTTTTGGGCTAGT  950
      |||| ||||||||  ||||||||||||||| ||||||||||  |||||||
seq2  TGTT-ACCCATGG--TATATAGTCCTAGCT-CACTAGCTTT--GGCTAGT  940

seq1  ATCATAAGGGGAGAGACCACCTGCTGTGCTTATCATTTTACTCCTAGTGA  1000
      ||||||| |||||||||   ||||||||||||||| |||||| |||||||
seq2  ATCATAA-GGGAGAGAC--ACTGCTGTGCTTATCA-TTTACT-CTAGTGA  985

seq1  CTCAAACAGAG-TATGCAAACATTAGTAGACAACCAAAAAGGATCCCTTA  1049
      ||||||| ||| ||||| ||||||||||||    || |||||||||||||
seq2  CTCAAAC-GAGTTATGC-AACATTAGTAGA----CACAAAGGATCCCTTA  1029

seq1  GTGAACTGTTATAAAAAGTGTAATTCCATGGGGTTGTGTCAAACTGACAA  1099
       || |||||||||||    |||  ||||| |||||||||||| |||||||
seq2  -TGGACTGTTATAAA---GGTA--TCCAT-GGGTTGTGTCAACCTGACAA  1072

seq1  GC  1101
      ||
seq2  GC  1074