BAC Information

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BAC

Clone NameB6Ng01-161B12
Chromosome16 (Build37)
Map Location 79,360,703 - 79,486,663
singlet/doubletdoublet
Overlap genenone
Upstream geneBtg3, D16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
Downstream geneEG383172, 1700066C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161B12.bB6Ng01-161B12.g
ACCDH954301DH954302
length1,2051,051
definitionDH954301|Mus musculus domesticus DNA, BAC clone: B6Ng01-161B12, 5' end.DH954302|Mus musculus domesticus DNA, BAC clone: B6Ng01-161B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,485,449 - 79,486,663)(79,360,703 - 79,361,775)
sequence
gaattccaatgatacagttaggttagactagctgacatcagccagcagtc
ttgcttctcactgtggaagattatgttacaggaatccttccatacatggg
aagtcaatcaactacctagaaatccacagcaagtaagaattccagctgcc
atcattaaaataattacttctctgtgaaaagtcagtaatatgcttcaaaa
aagtgaaaaatatgaatttgtatatttctatcatttgaaagaaagacttg
atgagattaaaagaataaaacccaaataataaaatccaatagaataaaac
ctagaaagctatgatttataatgaataagcttctaatattttgatacaag
gacagcatactatatgagaaaacattaagattacagaaaaactgtctcac
aaatttaaaatatgatagaataaatacaagcttaaatataaaggaaattt
actgtgaaatgaagtaaaatagcaaagggatgagagtaagttagacagat
aattgcattttggtaatttgtgagttaatcaaagtgatataacacattaa
atcacacacaaagagaacaacagaaagaatataactgaagattaacaaga
aaatctataaactaaagaaattcaatcctcctcatcactgagatagtaag
tgaacaatattagaggaactgcattttatgagaattattagcatctttaa
taaaaagctttatccaacagcctagtatattagaaagaacaaacaaccaa
aaccaaccaaccaaacaaacaaacaaacgaacaaataaaagcaattgtca
aaataccagaagtgagattcataataataatcagtcttgaaagtaagaga
aatgcagaggcataacgtcgtggactttaaatttctgaaagtaacaacat
tggcattatatttatatctattaaacacttaggaaggtgcaaagatatat
tcagatatctctgtagtaataaaaatcataaatataataattgtttcccc
aaaaagctgaagaataatatggtttaaactatgatataggtagtcaggat
acaaacaagagaattggagagagagattcagaggatgtggtggggattca
ggaaacaatttttattacacagggagaaccactacattccaccgagcagt
aaacagaggctcatggttggaaccctgcccttggctagcgaggcagcaat
ccagt
gaattctatagaatcaataattcatctagacagcattaattcattaaaat
tcatctttaatttggtctttagaaaatatgatcaatagtgtgcaataatg
ctcagggattactatattaatttaataatgacaggaaaggcatatcagct
gctagaaagaatcctgagatgaagtctctttggagccttgccatttagct
tatcttaaatgtctcctaacagcttattggtttatatatagattaaatct
ctggatttttgctcaaaaacataatgtataaatctataattctggtttgc
tgtgcttttagtcacaagagtaaaaatatgtatatatgtattaatttata
aatatataaataacagagaaagtgtgaacacacatatatctcagagatat
tatttagattttcaaatggaagtgtttccacatgcaacaatgtagaaaca
cagagcacatttcactagatgaagtgaaccaaatgtgacataaccagtat
gtgaaacatgtaaaattaaacacatagaaacataatacaagactgattgc
agagtctgagagatgtaaaatgggagaagaactcatataaaaatgaaaat
caaaaacaaatatttcatgaaaaatatgtgaaataaaacacaaatctata
tatgaaatgaggtttaaaaaaaaacaaaatttgccaaagatataatacca
tattttggttgaggaagctaataaaagaatgaggtaggaaattttccaga
agtatatttatagatgaatctgggaattgctcataatattgaatacagtt
tcccagactcatcacattctactagtggatttggtggctttgttatgtaa
gggttcattcaatcaaacctaacatacacagatagctggttgagactgaa
ctgaaattttgaggatatccagccagagagcacctggagtttctagatga
gcccgacatgtagaatgatatcagtctgtatatgcaagaaataactagac
tgatacattgcattctacagctgggagcatcagaaatctaaatgatgaaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_79485449_79486663
seq2: B6Ng01-161B12.b_50_1254 (reverse)

seq1  ACTGGATTGCTG-CTTGCTAGCCAAAGGGGCAGGTGTC--AACATGAGCT  47
      |||||||||||| || |||||||||  |||||||  ||  | ||||||| 
seq2  ACTGGATTGCTGCCTCGCTAGCCAA--GGGCAGGGTTCCAACCATGAGCC  48

seq1  TCTGTTTTACTGCTCGGTGG-ATGTAGTATGTTTCTCCTTGTGTAATAAA  96
      |||| ||||||||||||||| ||||||  || |||||| |||||||||||
seq2  TCTG-TTTACTGCTCGGTGGAATGTAG--TGGTTCTCCCTGTGTAATAAA  95

seq1  TATTGTTTCCTGAATCCC--ACACATCCCTCTTGGATTCCTCTCTCTCCA  144
       |||||||||||||||||   ||||| |||||  || | |||||||||||
seq2  AATTGTTTCCTGAATCCCCACCACAT-CCTCT--GAAT-CTCTCTCTCCA  141

seq1  ATTCTCTTGTTTGTATCCCTGACTACCTATATCATAGTTTAAAACCATAT  194
      |||||||||||||||| ||||||||||||||||||||||| |||||||| 
seq2  ATTCTCTTGTTTGTAT-CCTGACTACCTATATCATAGTTT-AAACCATA-  188

seq1  TTATTCTTCAGCTTTTTTGGGGAAACATTATTTATATTTATGATTTTTTA  244
      |||||||||||| |||||||||||||| |  |||||||||||||||||  
seq2  TTATTCTTCAGC-TTTTTGGGGAAACAATTATTATATTTATGATTTTT--  235

seq1  TTTACTACAGAAGATATCTGAATATATCTTTGCACCTTCCTAAGTGTTTA  294
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTACTACAG-AGATATCTGAATATATCTTTGCACCTTCCTAAGTGTTTA  284

seq1  ATAGATATAAATATAATGCCAATGTTGTTACTTTCAGAAATTTAAAGTCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATATAAATATAATGCCAATGTTGTTACTTTCAGAAATTTAAAGTCC  334

seq1  ACGACGTTATGCCTCTGCATTTCTCTTACTTTCAAGACTGATTATTATTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACGTTATGCCTCTGCATTTCTCTTACTTTCAAGACTGATTATTATTA  384

seq1  TGAATCTCACTTCTGGTATTTTGACAATTGCTTTTATTTGTTCGTTTGTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTCACTTCTGGTATTTTGACAATTGCTTTTATTTGTTCGTTTGTT  434

seq1  TGTTTGTTTGGTTGGTTGGTTTTGGTTGTTTGTTCTTTCTAATATACTAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGGTTGGTTGGTTTTGGTTGTTTGTTCTTTCTAATATACTAG  484

seq1  GCTGTTGGATAAAGCTTTTTATTAAAGATGCTAATAATTCTCATAAAATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGGATAAAGCTTTTTATTAAAGATGCTAATAATTCTCATAAAATG  534

seq1  CAGTTCCTCTAATATTGTTCACTTACTATCTCAGTGATGAGGAGGATTGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCTCTAATATTGTTCACTTACTATCTCAGTGATGAGGAGGATTGA  584

seq1  ATTTCTTTAGTTTATAGATTTTCTTGTTAATCTTCAGTTATATTCTTTCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTAGTTTATAGATTTTCTTGTTAATCTTCAGTTATATTCTTTCT  634

seq1  GTTGTTCTCTTTGTGTGTGATTTAATGTGTTATATCACTTTGATTAACTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTCTTTGTGTGTGATTTAATGTGTTATATCACTTTGATTAACTC  684

seq1  ACAAATTACCAAAATGCAATTATCTGTCTAACTTACTCTCATCCCTTTGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTACCAAAATGCAATTATCTGTCTAACTTACTCTCATCCCTTTGC  734

seq1  TATTTTACTTCATTTCACAGTAAATTTCCTTTATATTTAAGCTTGTATTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACTTCATTTCACAGTAAATTTCCTTTATATTTAAGCTTGTATTT  784

seq1  ATTCTATCATATTTTAAATTTGTGAGACAGTTTTTCTGTAATCTTAATGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATCATATTTTAAATTTGTGAGACAGTTTTTCTGTAATCTTAATGT  834

seq1  TTTCTCATATAGTATGCTGTCCTTGTATCAAAATATTAGAAGCTTATTCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATATAGTATGCTGTCCTTGTATCAAAATATTAGAAGCTTATTCA  884

seq1  TTATAAATCATAGCTTTCTAGGTTTTATTCTATTGGATTTTATTATTTGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATCATAGCTTTCTAGGTTTTATTCTATTGGATTTTATTATTTGG  934

seq1  GTTTTATTCTTTTAATCTCATCAAGTCTTTCTTTCAAATGATAGAAATAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTCTTTTAATCTCATCAAGTCTTTCTTTCAAATGATAGAAATAT  984

seq1  ACAAATTCATATTTTTCACTTTTTTGAAGCATATTACTGACTTTTCACAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCATATTTTTCACTTTTTTGAAGCATATTACTGACTTTTCACAG  1034

seq1  AGAAGTAATTATTTTAATGATGGCAGCTGGAATTCTTACTTGCTGTGGAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAATTATTTTAATGATGGCAGCTGGAATTCTTACTTGCTGTGGAT  1084

seq1  TTCTAGGTAGTTGATTGACTTCCCATGTATGGAAGGATTCCTGTAACATA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGTAGTTGATTGACTTCCCATGTATGGAAGGATTCCTGTAACATA  1134

seq1  ATCTTCCACAGTGAGAAGCAAGACTGCTGGCTGATGTCAGCTAGTCTAAC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCACAGTGAGAAGCAAGACTGCTGGCTGATGTCAGCTAGTCTAAC  1184

seq1  CTAACTGTATCATTGGAATTC  1215
      |||||||||||||||||||||
seq2  CTAACTGTATCATTGGAATTC  1205

seq1: chr16_79360703_79361775
seq2: B6Ng01-161B12.g_68_1118

seq1  GAATTCTATAGAATCAATAATTCATCTAGACAGCATTAATTCATTAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGAATCAATAATTCATCTAGACAGCATTAATTCATTAAAAT  50

seq1  TCATCTTTAATTTGGTCTTTAGAAAATATGATCAATAGTGTGCAATAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTAATTTGGTCTTTAGAAAATATGATCAATAGTGTGCAATAATG  100

seq1  CTCAGGGATTACTATATTAATTTAATAATGACAGGAAAGGCATATCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGATTACTATATTAATTTAATAATGACAGGAAAGGCATATCAGCT  150

seq1  GCTAGAAAGAATCCTGAGATGAAGTCTCTTTGGAGCCTTGCCATTTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAAGAATCCTGAGATGAAGTCTCTTTGGAGCCTTGCCATTTAGCT  200

seq1  TATCTTAAATGTCTCCTAACAGCTTATTGGTTTATATATAGATTAAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAAATGTCTCCTAACAGCTTATTGGTTTATATATAGATTAAATCT  250

seq1  CTGGATTTTTGCTCAAAAACATAATGTATAAATCTATAATTCTGGTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTTTGCTCAAAAACATAATGTATAAATCTATAATTCTGGTTTGC  300

seq1  TGTGCTTTTAGTCACAAGAGTAAAAATATGTATATATGTATTAATTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTTAGTCACAAGAGTAAAAATATGTATATATGTATTAATTTATA  350

seq1  AATATATAAATAACAGAGAAAGTGTGAACACACATATATCTCAGAGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAAATAACAGAGAAAGTGTGAACACACATATATCTCAGAGATAT  400

seq1  TATTTAGATTTTCAAATGGAAGTGTTTCCACATGCAACAATGTAGAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGATTTTCAAATGGAAGTGTTTCCACATGCAACAATGTAGAAACA  450

seq1  CAGAGCACATTTCACTAGATGAAGTGAACCAAATGTGACATAACCAGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCACATTTCACTAGATGAAGTGAACCAAATGTGACATAACCAGTAT  500

seq1  GTGAAACATGTAAAATTAAACACATAGAAACATAATACAAGACTGATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACATGTAAAATTAAACACATAGAAACATAATACAAGACTGATTGC  550

seq1  AGAGTCTGAGAGATGTAAAATGGGAGAAGAACTCATATAAAAATGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGAGAGATGTAAAATGGGAGAAGAACTCATATAAAAATGAAAAT  600

seq1  CAAAAACAAATATTTCATGAAAAATATGTGAAATAAAACACAAATCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAATATTTCATGAAAAATATGTGAAATAAAACACAAATCTATA  650

seq1  TATGAAATGAGGTTTAAAAAAAAACAAAATTTGCCAAAGATATAATACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATGAGGTTTAAAAAAAAACAAAATTTGCCAAAGATATAATACCA  700

seq1  TATTTTGGTTGAGGAAGCTAATAAAAGAATGAGGTAGGAAATTTTCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGTTGAGGAAGCTAATAAAAGAATGAGGTAGGAAATTTTCCAGA  750

seq1  AGTATATTTATAGATGAATCTGGGAATTGCTCATAATATTGAATACAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTTATAGATGAATCTGGGAATTGCTCATAATATTGAATACAGTT  800

seq1  TCCCAGACTCATCACATTCTACTAGTGGATTTGGTGGCTTTGTTATGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGACTCATCACATTCTACTAGTGGATTTGGTGGCTTTGTTATGTAA  850

seq1  GGGTTCATTCAATCAAACCTAACATACACAAGATAGCTGGTTGAGACTGA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGGTTCATTCAATCAAACCTAACATACAC-AGATAGCTGGTTGAGACTGA  899

seq1  ACTGAAATTTTGAGGATATCCAGCCAGAGAGGCACCTGGAGGTTTCTAGA  950
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  ACTGAAATTTTGAGGATATCCAGCCAGAGA-GCACCTGGA-GTTTCTAGA  947

seq1  ATGGAGCCCGACATTGTAGAAATTGATATCAGTTCCTGTAATATGGCAAA  1000
         |||||||||| |||||||  ||||||||||  |||| |||||   ||
seq2  --TGAGCCCGACA-TGTAGAA--TGATATCAGT--CTGT-ATATG--CAA  987

seq1  GAGATAACTAAGACTGATAACATTGCCATTCTACAGCCTTGGGAAGCATC  1050
      || |||||| |||||||| |||||| |||||||||||  |||| ||||||
seq2  GAAATAACT-AGACTGAT-ACATTG-CATTCTACAGC--TGGG-AGCATC  1031

seq1  AGAAATTCTTAAATGAATGAAAA  1073
      ||||||   |||||| |||||||
seq2  AGAAAT--CTAAATG-ATGAAAA  1051