BAC Information

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BAC

Clone NameB6Ng01-161E14
Chromosome16 (Build37)
Map Location 74,296,637 - 74,297,762
singlet/doubletsinglet
Overlap geneRobo2
Upstream geneLOC100039326
Downstream geneLOC665042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161E14.bB6Ng01-161E14.g
ACCDH954444DH954445
length1,1061,099
definitionDH954444|Mus musculus domesticus DNA, BAC clone: B6Ng01-161E14, 5' end.DH954445|Mus musculus domesticus DNA, BAC clone: B6Ng01-161E14, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttttcatttttctttactaggcagagactataaactaaaataat
aattaaaaagcagcaatgataagactcttaccttggcagttgtttataaa
ccatccttatcaggaaggagctgttattttatatgccaaaagaaagttcc
tatattttaatgaaaaatatcacataccaaatagaataaaaacttatact
gtggggatttttgtgcatcttgttttttaaaatcaccttgtacttatgag
tggaaatcatttttctgcttataaattaaaaaccacttccctccctcctc
cctccctgtaaactaagctccaagcctttgccatttcagtgggatctttc
ctggtactgatcagtgctctatattggaaagccgctgagatgacaactgt
cttggtgtacatattttttttctttttctaaagataaaagtcattccagt
aaggtagttcactagttaaaagtattccaaaaaggttgggaatcacaatg
aaaacagacacagtttcctacaaggggacaagagttgagtagaagccttc
ctactccagtcctcccgggatctcgggggcttggattggatctgacagtg
atgggctcgtcttgactgcttcctttctttgtaccttgcactggtccatg
aaaagagcacacatcagactcctcctgacaccagggaggcttcataaatc
agccagtgagcactctggcatggacctttagtcactgccttccctccaga
cctgacacctgtcaccttttaaagagtgtacatttgctgtcactgtagct
gagtcctgtctcttctctatccactcacatatttctgtctaggtggcatt
atcaggatggctgtccatacatttcaattgctactattctggtcttaggt
ggcctatatttacaccattccatgataagcattggcttgtcaattataac
ataataaagtatgtaggatgtatacattaaaaagcagagcaagtaaagat
cataagcattgtttttttctaaaaaaacaaatcagattgatttatgctgt
aaattgatagatgtgggttagtgagcttatgatataggggctaagggaca
gggaat
gaattcaaggccaatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcgattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaacagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagccacaaataatataaaatatctcggcg
tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtcc
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatttaaattccaactcatttcttc
aacgaattagaaggaacatttgcaaattcatctggaataacaaaaaccga
ggatagcaaaactcttctcaaggataaaagaacctctggtggaatcacca
tgcctgacctaaagctttactacagagcaattgtgataaaactgcatggt
actggtaaagaagacagaacagtgaccattggaatagaattgaagaccca
gaaattgacccacacccttatggtcacttgatcttcgaacaaggagccaa
aaccatccagtggaagaaaacagcatttcaccattggggctgcacactgt
ttgttatattagagaatgcgatcgtcccatacttattctttgattaggtc
atctagtgatcagaactcactaaaccagaacctgaactttaaagggaatg
ggaaagccttgaattgccggaaattttctcgtacaacaacagtgcttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_74296637_74297762
seq2: B6Ng01-161E14.b_47_1152 (reverse)

seq1  ATTCACTGTCCCTTAAGACACCTATAATCCATAAGCTCACTAAACCCAAC  50
      |||| ||||||||||   | ||||||   ||||||||||||||  || ||
seq2  ATTCCCTGTCCCTTA--GCCCCTATA--TCATAAGCTCACTAA--CCCAC  44

seq1  ATTCTATCAAAATTTACAAGCATAAATTCAATCTGATTTGGTTTTTTTTA  100
      | ||||||  ||||||| |||||||| |||||||||||||  ||||||||
seq2  A-TCTATC--AATTTAC-AGCATAAA-TCAATCTGATTTG--TTTTTTTA  87

seq1  GGAAAAAAAAACATGCTTATGATCTTTTAACCTGCTCTGCTTTTTTAATG  150
      |  |||||||  |||||||||||||||  || |||||||| |||||||||
seq2  G--AAAAAAACAATGCTTATGATCTTT--ACTTGCTCTGC-TTTTTAATG  132

seq1  TTATACATCTTACATACTTTATTATGTTATTAATTGACAAGCCAATGCTT  200
       |||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  -TATACATCCTACATACTTTATTATGTTA-TAATTGACAAGCCAATGCTT  180

seq1  ATCATGGAATGGTGTAAATATAGGCCACCTAAGACCAGAATAGTAGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGAATGGTGTAAATATAGGCCACCTAAGACCAGAATAGTAGCAAT  230

seq1  TGAAATGTATGGACAGCCATCCTGATAATGCCACCTAGACAGAAATATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTATGGACAGCCATCCTGATAATGCCACCTAGACAGAAATATGT  280

seq1  GAGTGGATAGAGAAGAGACAGGACTCAGCTACAGTGACAGCAAATGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGATAGAGAAGAGACAGGACTCAGCTACAGTGACAGCAAATGTACA  330

seq1  CTCTTTAAAAGGTGACAGGTGTCAGGTCTGGAGGGAAGGCAGTGACTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAAAAGGTGACAGGTGTCAGGTCTGGAGGGAAGGCAGTGACTAAA  380

seq1  GGTCCATGCCAGAGTGCTCACTGGCTGATTTATGAAGCCTCCCTGGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATGCCAGAGTGCTCACTGGCTGATTTATGAAGCCTCCCTGGTGTC  430

seq1  AGGAGGAGTCTGATGTGTGCTCTTTTCATGGACCAGTGCAAGGTACAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGTCTGATGTGTGCTCTTTTCATGGACCAGTGCAAGGTACAAAG  480

seq1  AAAGGAAGCAGTCAAGACGAGCCCATCACTGTCAGATCCAATCCAAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGCAGTCAAGACGAGCCCATCACTGTCAGATCCAATCCAAGCCC  530

seq1  CCGAGATCCCGGGAGGACTGGAGTAGGAAGGCTTCTACTCAACTCTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGATCCCGGGAGGACTGGAGTAGGAAGGCTTCTACTCAACTCTTGTC  580

seq1  CCCTTGTAGGAAACTGTGTCTGTTTTCATTGTGATTCCCAACCTTTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTAGGAAACTGTGTCTGTTTTCATTGTGATTCCCAACCTTTTTGG  630

seq1  AATACTTTTAACTAGTGAACTACCTTACTGGAATGACTTTTATCTTTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTTAACTAGTGAACTACCTTACTGGAATGACTTTTATCTTTAGA  680

seq1  AAAAGAAAAAAAATATGTACACCAAGACAGTTGTCATCTCAGCGGCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAAAATATGTACACCAAGACAGTTGTCATCTCAGCGGCTTTC  730

seq1  CAATATAGAGCACTGATCAGTACCAGGAAAGATCCCACTGAAATGGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAGAGCACTGATCAGTACCAGGAAAGATCCCACTGAAATGGCAAA  780

seq1  GGCTTGGAGCTTAGTTTACAGGGAGGGAGGAGGGAGGGAAGTGGTTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGAGCTTAGTTTACAGGGAGGGAGGAGGGAGGGAAGTGGTTTTTA  830

seq1  ATTTATAAGCAGAAAAATGATTTCCACTCATAAGTACAAGGTGATTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAGCAGAAAAATGATTTCCACTCATAAGTACAAGGTGATTTTAA  880

seq1  AAAACAAGATGCACAAAAATCCCCACAGTATAAGTTTTTATTCTATTTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGATGCACAAAAATCCCCACAGTATAAGTTTTTATTCTATTTGG  930

seq1  TATGTGATATTTTTCATTAAAATATAGGAACTTTCTTTTGGCATATAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGATATTTTTCATTAAAATATAGGAACTTTCTTTTGGCATATAAAA  980

seq1  TAACAGCTCCTTCCTGATAAGGATGGTTTATAAACAACTGCCAAGGTAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCTCCTTCCTGATAAGGATGGTTTATAAACAACTGCCAAGGTAAG  1030

seq1  AGTCTTATCATTGCTGCTTTTTAATTATTATTTTAGTTTATAGTCTCTGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATCATTGCTGCTTTTTAATTATTATTTTAGTTTATAGTCTCTGC  1080

seq1  CTAGTAAAGAAAAATGAAAAGAATTC  1126
      ||||||||||||||||||||||||||
seq2  CTAGTAAAGAAAAATGAAAAGAATTC  1106