BAC Information

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BAC

Clone NameB6Ng01-161F07
Chromosome16 (Build37)
Map Location 92,140,754 - 92,263,731
singlet/doubletdoublet
Overlap genenone
Upstream geneOlig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3
Downstream geneKcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161F07.bB6Ng01-161F07.g
ACCDH954469DH954470
length1,1321,095
definitionDH954469|Mus musculus domesticus DNA, BAC clone: B6Ng01-161F07, 5' end.DH954470|Mus musculus domesticus DNA, BAC clone: B6Ng01-161F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,140,754 - 92,141,901)(92,262,616 - 92,263,731)
sequence
gaattcatcctcaccgttcggtaaatggcctcttggccgtctgcactgtc
tctgaggatggcctttatcacatcaaagtctgtccctcgagggaaatgac
cttggacatcagaaacccagtgtttgagaaaggatagcaataattatgct
taattttggcttttcatttatagcgaacaaatggatacaaatagcagttg
atattttaagcccagtatatcagaattttagacatgaggtcatgagagca
gtctttgatgccccagcctctagttaatttcaacctaaattttaatctga
gcatcaaagcactgtgataaagataggttttcctgacttccttcttctat
ctggtggacttgacatggttgtcatgaaatttgtttgtgtactgtttcct
aggtgctaaagaagtagaactttctagaaatgaggcacgtgggcatgctg
caaggcttaaggatttcagaaacaagcccccctggtgcttgattttaaac
atggattcaagggttctaatgtacatgaagtttttataatagacactgat
aacatggaaaaaggattgtttttcataatgtatcatatgggagcaagtct
tctatgtgactctctgacctctgggtctgccttagatgtctgccatggct
ggcaagactagctttatgcagttggcaccagatggtcccctgtttcatct
ctgccacaggcctctctttctccccgaggcttctctgagacaatggcctg
gcattcaagtgcatgcaaccctgaaatgtaaaggggataaacatccccct
gcacacacacacacacgcacacgcacacacacacacgcgcgcgcacacgt
gcacacacatgcgcgcgctgtaaggggataaacatccccctgcacacaca
cacacacacacgtacacgcgcacacacacacacacacacacacacacgtg
cacgcacacacacgcgcgcacacacacacacacacgcacacacgcacaca
cgtgcacgcacaaaccacacacacacacgacgaaggcttaagccagaggt
cctttttctgtcccgagcagagttcagaaagaggacagcctcgctcctta
atgaagaagtcctcccaggtttcttccttccc
gaattcttcatgtaaagggaaggtgccttcctcatgtgacattcaaattc
ggtctaatctggaaggacctgaaggaaaaccaactatgtgtttattctat
agtcctgtaacaagcaatggtctccctgtagggctttcttgaaaacaatg
ttgtgttttgctttttaaagatgaacagttagaaccagactgcacaagac
acgaatgattgatgggggagaatagtagacggcatctatagatgaacaaa
acagctttcagcacacatgaagactccaaccaggctcattaagtccaatc
cgtgcctatgagacgcttatgtaagaacattcgggaacttgtttagtttc
tgtgaaatgaggcataccttcccaaatttcacttccaaagttaaatttga
acctggaataacattcaattcctcactcaccatgctatgcatctgttgga
agcaaagtcaaaacaaattttctattgtaggacaaaaaatgagcgtcggc
tcgtccactgtttctcgtgatctcttcatagtttcctctctgttcccata
acttagaattatttgctcactttctaagtgagcacagctttcttctcctt
aacgtctccgcctggcttaggatttatagatgtgggagtcatctgaggtg
gggaccagtgggccagtgacttgggaccttgagcacagaggtctctgcct
cacagacccctataatgtatattgttgttaagaaaaaatgctaaaatctt
aatgagaaagtaaactaagccacagtttcttaacttgtgtttcagaaaaa
caaatgcttgtcttaatgctgcaatgctccctgtgaaaacaatttctcca
aatgctggaggcttaaaatacttgattcttgctcagaaatcccatccagt
attttgacattggcaccctctcccccatgctgggcttcagctccagggct
tctgcattgcctctctcagcctggcgtctcattcagatcctctgggattg
ttttactattatgggcaattttcagctagaaatactgaaactcttcaatg
cgtttacaatactgaggtttgagtttggagaacaatcccaagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_92140754_92141901
seq2: B6Ng01-161F07.b_48_1179

seq1  GAATTCATCCTCACCGTTCGGTAAATGGCCTCTTGGCCGTCTGCACTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTCACCGTTCGGTAAATGGCCTCTTGGCCGTCTGCACTGTC  50

seq1  TCTGAGGATGGCCTTTATCACATCAAAGTCTGTCCCTCGAGGGAAATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGATGGCCTTTATCACATCAAAGTCTGTCCCTCGAGGGAAATGAC  100

seq1  CTTGGACATCAGAAACCCAGTGTTTGAGAAAGGATAGCAATAATTATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACATCAGAAACCCAGTGTTTGAGAAAGGATAGCAATAATTATGCT  150

seq1  TAATTTTGGCTTTTCATTTATAGCGAACAAATGGATACAAATAGCAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGGCTTTTCATTTATAGCGAACAAATGGATACAAATAGCAGTTG  200

seq1  ATATTTTAAGCCCAGTATATCAGAATTTTAGACATGAGGTCATGAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAGCCCAGTATATCAGAATTTTAGACATGAGGTCATGAGAGCA  250

seq1  GTCTTTGATGCCCCAGCCTCTAGTTAATTTCAACCTAAATTTTAATCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGATGCCCCAGCCTCTAGTTAATTTCAACCTAAATTTTAATCTGA  300

seq1  GCATCAAAGCACTGTGATAAAGATAGGTTTTCCTGACTTCCTTCTTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAAGCACTGTGATAAAGATAGGTTTTCCTGACTTCCTTCTTCTAT  350

seq1  CTGGTGGACTTGACATGGTTGTCATGAAATTTGTTTGTGTACTGTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGACTTGACATGGTTGTCATGAAATTTGTTTGTGTACTGTTTCCT  400

seq1  AGGTGCTAAAGAAGTAGAACTTTCTAGAAATGAGGCACGTGGGCATGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTAAAGAAGTAGAACTTTCTAGAAATGAGGCACGTGGGCATGCTG  450

seq1  CAAGGCTTAAGGATTTCAGAAACAAGCCCCCCTGGTGCTTGATTTTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTAAGGATTTCAGAAACAAGCCCCCCTGGTGCTTGATTTTAAAC  500

seq1  ATGGATTCAAGGGTTCTAATGTACATGAAGTTTTTATAATAGACACTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTCAAGGGTTCTAATGTACATGAAGTTTTTATAATAGACACTGAT  550

seq1  AACATGGAAAAAGGATTGTTTTTCATAATGTATCATATGGGAGCAAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGAAAAAGGATTGTTTTTCATAATGTATCATATGGGAGCAAGTCT  600

seq1  TCTATGTGACTCTCTGACCTCTGGGTCTGCCTTAGATGTCTGCCATGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGACTCTCTGACCTCTGGGTCTGCCTTAGATGTCTGCCATGGCT  650

seq1  GGCAAGACTAGCTTTATGCAGTTGGCACCAGATGGTCCCCTGTTTCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGACTAGCTTTATGCAGTTGGCACCAGATGGTCCCCTGTTTCATCT  700

seq1  CTGCCACAGGCCTCTCTTTCTCCCCGAGGCTTCTCTGAGACAATGGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACAGGCCTCTCTTTCTCCCCGAGGCTTCTCTGAGACAATGGCCTG  750

seq1  GCATTCAAGTGCATGCAACCCTGAAATGT-AAGGGGATAAACATCCCCCT  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCATTCAAGTGCATGCAACCCTGAAATGTAAAGGGGATAAACATCCCCCT  800

seq1  GCACACACACACACACGCACACGCACACACACACACGCGCGCGCACACGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACACACACGCACACGCACACACACACACGCGCGCGCACACGT  850

seq1  GCACACACATGCGCGCGCTGTAAGGGGATAAACATCCCCCTGCACACACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACATGCGCGCGCTGTAAGGGGATAAACATCCCCCTGCACACACA  900

seq1  CACACACACACGCACACGCGCACACACACACACACACACACACACACGTG  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACACACACACGTACACGCGCACACACACACACACACACACACACACGTG  950

seq1  CACGCACACACACGCGCGCACACACACACACACACGCACACACGCACACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCACACACACGCGCGCACACACACACACACACGCACACACGCACACA  1000

seq1  CGTGCACGCACACACACACACACACACACGGACGAAAGCTTAAGGCCAGA  1049
      |||||||||||| || ||||||||||||| |||||| |||||| ||||||
seq2  CGTGCACGCACAAAC-CACACACACACAC-GACGAAGGCTTAA-GCCAGA  1047

seq1  GGGTCCTTTTTCTTGTCCCGAGGCAGGAGGTTCAAGAGAGAGGAGCAGGC  1099
       ||||||||||| |||||||| ||||   |||| ||| |||||| ||| |
seq2  -GGTCCTTTTTC-TGTCCCGA-GCAG--AGTTC-AGAAAGAGGA-CAGCC  1090

seq1  TCTCTGCTTCCTAGATGAGAGAGGTCCCTCCCAGCTCTTCTTCCTTCCC  1148
      || |    ||||  |||| ||| || |||||||| | ||||||||||||
seq2  TCGC----TCCTTAATGA-AGAAGT-CCTCCCAGGT-TTCTTCCTTCCC  1132

seq1: chr16_92262616_92263731
seq2: B6Ng01-161F07.g_70_1164 (reverse)

seq1  CCACTTGAGAAATTTGTTCTTCAAAACTCAAACCTCAGTAATTGGTAAAA  50
      ||||||| ||   |||||| || |||||||||||||||| ||||    ||
seq2  CCACTTGGGA---TTGTTC-TCCAAACTCAAACCTCAGT-ATTG---TAA  42

seq1  ACGCATTGGAAGAGTTTTCAGTATTTTCTAAGCTGAAAATATGCCCAT-A  99
      ||||||| |||||| |||||||| ||||| |||||||||| ||||||| |
seq2  ACGCATT-GAAGAG-TTTCAGTA-TTTCT-AGCTGAAAAT-TGCCCATAA  87

seq1  TAGTTAAAACAATCCCAGAGGGATCTGGAATGAGGACCGGCCAGGCTGGA  149
      ||| ||||||||||||||| |||||| |||||| |||  |||||||||  
seq2  TAG-TAAAACAATCCCAGA-GGATCT-GAATGA-GAC--GCCAGGCTG--  129

seq1  GGAGAGGCAGTGCAGAAGCCCTGGAGCTGAAGGCCCAGCATGGGGGAGAG  199
       |||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  AGAGAGGCAATGCAGAAGCCCTGGAGCTGAA-GCCCAGCATGGGGGAGAG  178

seq1  GGTGCCAATGTCAAAATACTGGATGGGATTTCTGAGCAAGAATCAAGTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAATGTCAAAATACTGGATGGGATTTCTGAGCAAGAATCAAGTAT  228

seq1  TTTAAGCCTCCAGCATTTGGGGAAATTGTTTTCACAGGGAGCATTGCAGC  299
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTAAGCCTCCAGCATTTGGAGAAATTGTTTTCACAGGGAGCATTGCAGC  278

seq1  ATTAAGACAAGCATTTGTTTTCCTGAAACACAAGTTAAGAAACTGTGGCT  349
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTAAGACAAGCATTTGTTTTTCTGAAACACAAGTTAAGAAACTGTGGCT  328

seq1  TAGTTTACTTTCTCATTAAGATTTTAGCATTTTTTCTTAACAACAATATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTACTTTCTCATTAAGATTTTAGCATTTTTTCTTAACAACAATATA  378

seq1  CATTATAGGGGTCTGTGAGGCAGAGACCTCTGTGCTCAAGGTCCCAAGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAGGGGTCTGTGAGGCAGAGACCTCTGTGCTCAAGGTCCCAAGTC  428

seq1  ACTGGCCCACTGGTCCCCACCTCAGATGACTCCCACATCTATAAATCCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCCACTGGTCCCCACCTCAGATGACTCCCACATCTATAAATCCTA  478

seq1  AGCCAGGCGGAGACGTTAAGGAGAAGAAAGCTGTGCTCACTTAGAAAGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCGGAGACGTTAAGGAGAAGAAAGCTGTGCTCACTTAGAAAGTG  528

seq1  AGCAAATAATTCTAAGTTATGGGAACAGAGAGGAAACTATGAAGAGATCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATAATTCTAAGTTATGGGAACAGAGAGGAAACTATGAAGAGATCA  578

seq1  CGAGAAACAGTGGACGAGCCGACGCTCATTTTTTGTCCTACAATAGAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAACAGTGGACGAGCCGACGCTCATTTTTTGTCCTACAATAGAAAA  628

seq1  TTTGTTTTGACTTTGCTTCCAACAGATGCATAGCATGGTGAGTGAGGAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGACTTTGCTTCCAACAGATGCATAGCATGGTGAGTGAGGAAT  678

seq1  TGAATGTTATTCCAGGTTCAAATTTAACTTTGGAAGTGAAATTTGGGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTTATTCCAGGTTCAAATTTAACTTTGGAAGTGAAATTTGGGAAG  728

seq1  GTATGCCTCATTTCACAGAAACTAAACAAGTTCCCGAATGTTCTTACATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCCTCATTTCACAGAAACTAAACAAGTTCCCGAATGTTCTTACATA  778

seq1  AGCGTCTCATAGGCACGGATTGGACTTAATGAGCCTGGTTGGAGTCTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCTCATAGGCACGGATTGGACTTAATGAGCCTGGTTGGAGTCTTCA  828

seq1  TGTGTGCTGAAAGCTGTTTTGTTCATCTATAGATGCCGTCTACTATTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTGAAAGCTGTTTTGTTCATCTATAGATGCCGTCTACTATTCTC  878

seq1  CCCCATCAATCATTCGTGTCTTGTGCAGTCTGGTTCTAACTGTTCATCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCAATCATTCGTGTCTTGTGCAGTCTGGTTCTAACTGTTCATCTT  928

seq1  TAAAAAGCAAAACACAACATTGTTTTCAAGAAAGCCCTACAGGGAGACCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCAAAACACAACATTGTTTTCAAGAAAGCCCTACAGGGAGACCA  978

seq1  TTGCTTGTTACAGGACTATAGAATAAACACATAGTTGGTTTTCCTTCAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGTTACAGGACTATAGAATAAACACATAGTTGGTTTTCCTTCAGG  1028

seq1  TCCTTCCAGATTAGACCGAATTTGAATGTCACATGAGGAAGGCACCTTCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCAGATTAGACCGAATTTGAATGTCACATGAGGAAGGCACCTTCC  1078

seq1  CTTTACATGAAGAATTC  1116
      |||||||||||||||||
seq2  CTTTACATGAAGAATTC  1095