BAC Information

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BAC

Clone NameB6Ng01-161O18
Chromosome16 (Build37)5 (Build37)
Map Location 11,457,011 - 11,458,151122,312,941 - 122,313,386
singlet/doubletsingletsinglet
Overlap gene4933437K13Rik
Upstream geneCiita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17
Downstream geneLOC100043171, C530044N13Rik, 2700045P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161O18.bB6Ng01-161O18.g
ACCDH954901DH954902
length1,14180
definitionDH954901|Mus musculus domesticus DNA, BAC clone: B6Ng01-161O18, 5' end.DH954902|Mus musculus domesticus DNA, BAC clone: B6Ng01-161O18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,457,011 - 11,458,151)(122,312,941 - 122,313,386)
sequence
gaattctttattagaacgttagttatgtctgagcaacaccaagccagatg
aactccaaaaagtgactgtagccttgaggtgtaggaataaattacttcca
tggtcccagctctggctaaggatacctgcaggggcctctgggtggcactt
atcagcattaactcttgcaaaaaaatctataagagtaagactgtttcacc
ctggctttccaaaggagaagcattaggcactaagtggccatctgccatcc
cacatccactgggaacagaggctcctatgtaaataagtatttccttaaat
ggtgcctgaggcacctccctctaccccagcctcagacagagctgacaatg
gtagcacactcttgtaatcctaatattttcaaggctgaggcaatgggact
ctgagttcaaggccagcctaggttatacactaagttcaagaacatcaaga
acaacctgggctatctaccaagcttctgccaaaacaaaaacaaaaaccaa
acaaacccaaagactaaagtaaactgacgcaaaactaatcccacccctgc
cccacatcatgccacacttacacctgagcatggctggcgcacagaatcac
tcagccaaatgtttaacatctgtgtctatacaccccatcccaccccaccc
acccctcttcaatttaaacacataggctcacgcagccatgctctgttcat
ttctaactgataaagcttaccacaaaacagctgctctttgaagagttaac
aaatgaacaaggtaaactacagagcctggaagaactccggcagcaccaga
ctacaggtgagcagtttccactgagacagatctttgcctatcctgatgct
ttgggcctaacacacaagtcccgacttatacatggattcccctgctcctc
agctgcaagtttagggacctggggctgctgctgagcatggagcaaaggtg
ggaatcttcagctcatcaccaccaaacagtgactcgtccagtagcctgaa
tgaggaggcagaaggaaaggtgactgggacacagtagggctcagagatca
cgtgggaatcaagttcaagagatgactaaacatacattcttgcagtggtc
tcgccaatgttcttgaaaaaaggacaaggtaagggctgagg
caggacagccagggctatgcagagaaaccctgtctcgaaacaaacaaaca
aacaaacaaacaaaggcggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_11457011_11458151
seq2: B6Ng01-161O18.b_47_1187 (reverse)

seq1  CCTCAGCCTTTTCCCTTGTCCTTTTTCTCAGGACCATTGGCAGAAACACT  50
      ||||||||  || ||||||||||||| ||| || |||||||   | ||||
seq2  CCTCAGCC-CTTACCTTGTCCTTTTT-TCAAGAACATTGGCGAGACCACT  48

seq1  GC-AGAATGTATGTTTAGTCATCCTCTTG-ACCTGATTCCCCACGTGATC  98
      || ||||||||||||||||||| |||||| || ||||| |||||||||||
seq2  GCAAGAATGTATGTTTAGTCAT-CTCTTGAACTTGATT-CCCACGTGATC  96

seq1  TTCTGAGCACCTACTGTGT-CCAGTCACCCTTCCCTCTGCCTCCCTCATT  147
       ||||||| |||||||||| ||||||||| |||| ||||||| |||||||
seq2  -TCTGAGC-CCTACTGTGTCCCAGTCACCTTTCCTTCTGCCT-CCTCATT  143

seq1  CAGGCTACTGGACGAGTCACTTGTCTGGT-GTGATGAGCTG-AGAGTCCC  195
      |||||||||||||||||||| ||| |||| ||||||||||| ||| ||||
seq2  CAGGCTACTGGACGAGTCAC-TGTTTGGTGGTGATGAGCTGAAGATTCCC  192

seq1  ACCTTTGCTCCATGCTCAGCAGCAGCCCCAGGTCCCT-AACTTGCAGCTG  244
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACCTTTGCTCCATGCTCAGCAGCAGCCCCAGGTCCCTAAACTTGCAGCTG  242

seq1  A-GAGCAGGGGAATCCATGTATAAGTCGGGACTTGTGTGTTAGGCCC-AA  292
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGAGCAGGGGAATCCATGTATAAGTCGGGACTTGTGTGTTAGGCCCAAA  292

seq1  GCATCAGGATAGGCAAAGATCTGTCTCAGTGGAAACTGCTCACCTGTAGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGGATAGGCAAAGATCTGTCTCAGTGGAAACTGCTCACCTGTAGT  342

seq1  CTGGTGCTGCCGGAGTTCTTCCAGGCTCTGTAGTTTACCTTGTTCATTTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCTGCCGGAGTTCTTCCAGGCTCTGTAGTTTACCTTGTTCATTTG  392

seq1  TTAACTCTTCAAAGAGCAGCTGTTTTGTGGTAAGCTTTATCAGTTAGAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTTCAAAGAGCAGCTGTTTTGTGGTAAGCTTTATCAGTTAGAAA  442

seq1  TGAACAGAGCATGGCTGCGTGAGCCTATGTGTTTAAATTGAAGAGGGGTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGAGCATGGCTGCGTGAGCCTATGTGTTTAAATTGAAGAGGGGTG  492

seq1  GGTGGGGTGGGATGGGGTGTATAGACACAGATGTTAAACATTTGGCTGAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGTGGGATGGGGTGTATAGACACAGATGTTAAACATTTGGCTGAG  542

seq1  TGATTCTGTGCGCCAGCCATGCTCAGGTGTAAGTGTGGCATGATGTGGGG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGTGCGCCAGCCATGCTCAGGTGTAAGTGTGGCATGATGTGGGG  592

seq1  CAGGGGTGGGATTAGTTTTGCGTCAGTTTACTTTAGTCTTTGGGTTTGTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTGGGATTAGTTTTGCGTCAGTTTACTTTAGTCTTTGGGTTTGTT  642

seq1  TGGTTTTTGTTTTTGTTTTGGCAGAAGCTTGGTAGATAGCCCAGGTTGTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTGTTTTTGTTTTGGCAGAAGCTTGGTAGATAGCCCAGGTTGTT  692

seq1  CTTGATGTTCTTGAACTTAGTGTATAACCTAGGCTGGCCTTGAACTCAGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGTTCTTGAACTTAGTGTATAACCTAGGCTGGCCTTGAACTCAGA  742

seq1  GTCCCATTGCCTCAGCCTTGAAAATATTAGGATTACAAGAGTGTGCTACC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATTGCCTCAGCCTTGAAAATATTAGGATTACAAGAGTGTGCTACC  792

seq1  ATTGTCAGCTCTGTCTGAGGCTGGGGTAGAGGGAGGTGCCTCAGGCACCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAGCTCTGTCTGAGGCTGGGGTAGAGGGAGGTGCCTCAGGCACCA  842

seq1  TTTAAGGAAATACTTATTTACATAGGAGCCTCTGTTCCCAGTGGATGTGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGAAATACTTATTTACATAGGAGCCTCTGTTCCCAGTGGATGTGG  892

seq1  GATGGCAGATGGCCACTTAGTGCCTAATGCTTCTCCTTTGGAAAGCCAGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAGATGGCCACTTAGTGCCTAATGCTTCTCCTTTGGAAAGCCAGG  942

seq1  GTGAAACAGTCTTACTCTTATAGATTTTTTTGCAAGAGTTAATGCTGATA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACAGTCTTACTCTTATAGATTTTTTTGCAAGAGTTAATGCTGATA  992

seq1  AGTGCCACCCAGAGGCCCCTGCAGGTATCCTTAGCCAGAGCTGGGACCAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCACCCAGAGGCCCCTGCAGGTATCCTTAGCCAGAGCTGGGACCAT  1042

seq1  GGAAGTAATTTATTCCTACACCTCAAGGCTACAGTCACTTTTTGGAGTTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAATTTATTCCTACACCTCAAGGCTACAGTCACTTTTTGGAGTTC  1092

seq1  ATCTGGCTTGGTGTTGCTCAGACATAACTAACGTTCTAATAAAGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTTGGTGTTGCTCAGACATAACTAACGTTCTAATAAAGAATTC  1141

seq1: chr5_122312941_122313386
seq2: B6Ng01-161O18.g_76_155

seq1  CAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACAAAACA  50
      |||||||||||||||||  ||||||||||||||||        | |||||
seq2  CAGGACAGCCAGGGCTATGCAGAGAAACCCTGTCT--------CGAAACA  42

seq1  GACAAACAAACAAACAAACAAAAAAGCCCCACATCAAGGATTTCTTCTTC  100
       ||||||||||||||||||  ||| ||          ||           
seq2  AACAAACAAACAAACAAAC--AAAGGCGGGGGGGGGGGGG----------  80

seq1  ATTCATGTTGCCCAGAGGCAAGAGTTCCCCTTCCCTAAGCCCCCCTCCTC  150
                                                        
seq2  --------------------------------------------------  80

seq1  TTTGGCCATATTAATCAGGCTGAGGTGAAATGACTCGAGCTGTGTGCGCC  200
                                                        
seq2  --------------------------------------------------  80

seq1  ACTCGAGGTGGGTGGCTTTGAACACTGATTTTGAGAGCCCAGCTCACAGT  250
                                                        
seq2  --------------------------------------------------  80

seq1  GCACATGTTACAAATGTTTCTGAATGAATGTGACAGATTCTAGAAGCAGA  300
                                                        
seq2  --------------------------------------------------  80

seq1  GTTGATGTCCCCATTGCCACTCAGGAGAGAAAACTGTTAGGTGACCACGT  350
                                                        
seq2  --------------------------------------------------  80

seq1  CGCCTATCATGCGACGGTCTGGTTCTGCATGGGGAGAAAGCTCTGCTGAG  400
                                                        
seq2  --------------------------------------------------  80

seq1  GCTGTCCCTTCCTGCGGCTGCTTCATCTGGCACGGGGGGGGGGGGG  446
                                                    
seq2  ----------------------------------------------  80