BAC Information

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BAC

Clone NameB6Ng01-162O04
Chromosome16 (Build37)
Map Location 55,556,316 - 55,710,083
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043449, LOC667927, LOC436421, Zpld1
Downstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835, Abi3bp, Tfg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162O04.bB6Ng01-162O04.g
ACCDH955610DH955611
length4671,017
definitionDH955610|Mus musculus domesticus DNA, BAC clone: B6Ng01-162O04, 5' end.DH955611|Mus musculus domesticus DNA, BAC clone: B6Ng01-162O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,709,607 - 55,710,083)(55,556,316 - 55,557,337)
sequence
tttccacctttctgttacattaattgcaacttccatgctggcctacctat
ctatctatctatctatctatctatctatctatctatctatctatcatcta
ttaaatgtataggatacaggcctaggacccacaaattttggctctctaga
aaaaaagggagcccacaaagaatatccatcatggaaaaatacactgggat
tgaagaaacaccagagaaaagaaagggcttatgaaaacctacagagggta
actttaaggtgtgaactatagacaaatacagaaatagaataagttgtagt
gaaattcgttgttgtcacaaaggcacagcacagccccattagtgttatgg
gagaagaaaccacagcaaaagagatttattcactaaatattctttttaaa
tcttttttccatttttattggttattttatttatttacatttcaaatgtt
atcccccttcccagttt
gaattcaacttttcaaattgcacaaaatactggagaggaaaaaaaagcca
gtgattctaggtaaacactcgggagtaccagtgcccaggctggcaattca
aatgcttacagagaagccgaagcagctccaaacaaaggttgctattagca
acagaaaatgcagctagcaacatcagcttcaggaagaaaaagtaggcaaa
gatcgggctctaagaaagatggccataatgccaaggatgaaatatgcagt
acaaaattgtctagcattcattttgctttatattttttccatcaaggaaa
agaatgttcacaatataagattcagataaacattgttagagaaaatgaaa
ccagtttgctttgaaaagaaaaaaattatgtcaccagtttcgattatccc
ggggtatgaaaataacttgatataaactgcttacaagaaattactgtcat
ccatggatcacagattataaaggatgaaattgtagagaagtctggagatt
aaaaactttccattaaaaaacagaaacaaacaacaacaacaaacccagac
tgagctgttattaggagagcaaccctgggcatctgggaatggtaagtctc
ttaaactaatattgaactcccactagactacatgagtaatcttattcttt
aaaattgtcacaccacaagaacacggtccacagaatcaactaaccagggc
acataagagctcacagagaatgaactaacctatataggtctgacctaggt
cctctgcatgtatgttatggttgtgtagcttggtgttctagtgggactcc
taacagtgggagcagggctctctctgactcttttgcctgcttttgggaac
cttttccactgggttgccttgtacagtcttaatatgagagcttgtgtcta
gtcttataacttgtgttgtgactgggtgatatcccagagaggcctgctct
tttcgaagggaaatgaagagtgaatcttggggagaggagatggtggggag
ggactagaaggaagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_55709607_55710083
seq2: B6Ng01-162O04.b_45_517 (reverse)

seq1  AAACTGGGAAGGGGGATAACATTTGAAATGTAAATAAATAAAATAACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGAAGGGGGATAACATTTGAAATGTAAATAAATAAAATAACCAA  50

seq1  TAAAAATGGAAAAAAGATTTAAAAAGAATATTTAGTGAATAAATCTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGGAAAAAAGATTTAAAAAGAATATTTAGTGAATAAATCTCTTT  100

seq1  TGCTGTGGTTTCTTCTCCCATAACACTAATGGGGCTGTGCTGTGCCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGTTTCTTCTCCCATAACACTAATGGGGCTGTGCTGTGCCTTTG  150

seq1  TGACAACAACGAATTTCACTACAACTTATTCTATTTCTGTATTTGTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACAACGAATTTCACTACAACTTATTCTATTTCTGTATTTGTCTAT  200

seq1  AGTTCACACCTTAAAGTTACCCTCTGTAGGTTTTCATAAGCCCTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACACCTTAAAGTTACCCTCTGTAGGTTTTCATAAGCCCTTTCTTT  250

seq1  TCTCTGGTGTTTCTTCAATCCCAGTGTATTTTTCCATGATGGATATTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTGTTTCTTCAATCCCAGTGTATTTTTCCATGATGGATATTCTT  300

seq1  TGTGGGCTCCCTTTTTTTCTAGAGAGCCAAAATTTGTGGGTCCTAGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCTCCCTTTTTTTCTAGAGAGCCAAAATTTGTGGGTCCTAGGCCT  350

seq1  GTATCCTATACATTTAATAGATGATAGATAGATAGATAGATAGATAGATA  400
      ||||||||||||||||||||||    ||||||||||||||||||||||||
seq2  GTATCCTATACATTTAATAGAT----GATAGATAGATAGATAGATAGATA  396

seq1  GATAGATAGATAGATAGATAGATAGGTAGGCCAGCATGGAAGTTGCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGGTAGGCCAGCATGGAAGTTGCAATT  446

seq1  AATGTAACAGAAAGGTGGAAAGAATTC  477
      |||||||||||||||||||||||||||
seq2  AATGTAACAGAAAGGTGGAAAGAATTC  473

seq1: chr16_55556316_55557337
seq2: B6Ng01-162O04.g_67_1083

seq1  GAATTCAACTTTTCAAATTGCACAAAATACTGGAGAGGAAAAAAAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTTTCAAATTGCACAAAATACTGGAGAGGAAAAAAAAGCCA  50

seq1  GTGATTCTAGGTAAACACTCGGGAGTACCAGTGCCCAGGCTGGCAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCTAGGTAAACACTCGGGAGTACCAGTGCCCAGGCTGGCAATTCA  100

seq1  AATGCTTACAGAGAAGCCGAAGCAGCTCCAAACAAAGGTTGCTATTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTACAGAGAAGCCGAAGCAGCTCCAAACAAAGGTTGCTATTAGCA  150

seq1  ACAGAAAATGCAGCTAGCAACATCAGCTTCAGGAAGAAAAAGTAGGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAATGCAGCTAGCAACATCAGCTTCAGGAAGAAAAAGTAGGCAAA  200

seq1  GATCGGGCTCTAAGAAAGATGGCCATAATGCCAAGGATGAAATATGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGGGCTCTAAGAAAGATGGCCATAATGCCAAGGATGAAATATGCAGT  250

seq1  ACAAAATTGTCTAGCATTCATTTTGCTTTATATTTTTTCCATCAAGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTGTCTAGCATTCATTTTGCTTTATATTTTTTCCATCAAGGAAA  300

seq1  AGAATGTTCACAATATAAGATTCAGATAAACATTGTTAGAGAAAATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTCACAATATAAGATTCAGATAAACATTGTTAGAGAAAATGAAA  350

seq1  CCAGTTTGCTTTGAAAAGAAAAAAATTATGTCACCAGTTTCGATTATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTGCTTTGAAAAGAAAAAAATTATGTCACCAGTTTCGATTATCCC  400

seq1  GGGGTATGAAAATAACTTGATATAAACTGCTTACAAGAAATTACTGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTATGAAAATAACTTGATATAAACTGCTTACAAGAAATTACTGTCAT  450

seq1  CCATGGATCACAGATTATAAAGGATGAAATTGTAGAGAAGTCTGGAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGATCACAGATTATAAAGGATGAAATTGTAGAGAAGTCTGGAGATT  500

seq1  AAAAACTTTCCATTAAAAAACAGAAACAAACAACAACAACAAACCCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTTCCATTAAAAAACAGAAACAAACAACAACAACAAACCCAGAC  550

seq1  TGAGCTGTTATTAGGAGAGCAACCCTGGGCATCTGGGAATGGTAAGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGTTATTAGGAGAGCAACCCTGGGCATCTGGGAATGGTAAGTCTC  600

seq1  TTAAACTAATATTGAACTCCCACTAGACTACATGAGTAATCTTATTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTAATATTGAACTCCCACTAGACTACATGAGTAATCTTATTCTTT  650

seq1  AAAATTGTCACACCACAAGAACACGGTCCACAGAATCAACTAACCAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTCACACCACAAGAACACGGTCCACAGAATCAACTAACCAGGGC  700

seq1  ACATAAGAGCTCACAGAGAATGAACTAACCTATATAGGTCTGACCTAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGAGCTCACAGAGAATGAACTAACCTATATAGGTCTGACCTAGGT  750

seq1  CCTCTGCATGTATGTTATGGTTGTGTAGCTTGGTGTTCTAGTGGGACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCATGTATGTTATGGTTGTGTAGCTTGGTGTTCTAGTGGGACTCC  800

seq1  TAACAGTGGGAGCAGGGCTCTCTCTGACTCTTTTGCCTGCTTTTGGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGGGAGCAGGGCTCTCTCTGACTCTTTTGCCTGCTTTTGGGAAC  850

seq1  CTTTTCCACTGGGTTGCCTTGTACAGTCTTAATATGAGAGCTTGTGTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCACTGGGTTGCCTTGTACAGTCTTAATATGAGAGCTTGTGTCTA  900

seq1  GTCTTATAACTTGTGTTGTGACTGGGTGATATCCCAGAGAGGCCTGCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATAACTTGTGTTGTGACTGGGTGATATCCCAGAGAGGCCTGCTCT  950

seq1  TTTCCGAAGGGAAATGAAGGAGTGAATCTTGGGGAGAGGGAAGAATGTGG  1000
      ||| |||||||||||||| ||||||||||||||||||||  |||  ||||
seq2  TTT-CGAAGGGAAATGAA-GAGTGAATCTTGGGGAGAGG--AGATGGTGG  996

seq1  GGAGGGACTAGAAGGAAAGAAG  1022
      ||||||||||||||| ||||||
seq2  GGAGGGACTAGAAGG-AAGAAG  1017