BAC Information

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BAC

Clone NameB6Ng01-163B02
Chromosome16 (Build37)
Map Location 28,353,755 - 28,485,089
singlet/doubletdoublet
Overlap geneFgf12
Upstream geneUts2d, Ccdc50
Downstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163B02.bB6Ng01-163B02.g
ACCDH955747DH955748
length1,188543
definitionDH955747|Mus musculus domesticus DNA, BAC clone: B6Ng01-163B02, 5' end.DH955748|Mus musculus domesticus DNA, BAC clone: B6Ng01-163B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,483,900 - 28,485,089)(28,353,755 - 28,354,303)
sequence
gaattcaaaagacgctcaaaaactagagtaagaacaagagggccaatgaa
agaaaagttcaaagtgagcccagcccagctcagatagacgccctgtgtca
gagtgtctattgtgctcgaagcctggagcttagactctcctgccttcctg
agaacctagaggtcaccctggacatgctctgtggcttctgcctgagtcca
cctgacttacccctgttgctgtcgcctacctcttcatcatttcatcgtct
gggcttttgcaaattatcattagccaggttaccatctccaagaaatctcc
cctccatcccaagaccatagtcagggacttcttcacaatgcagatgcctt
catttcttcacaataagtcttccaaaccattccatagggtagtcttgtcc
ttagaacaatgctttattttcagtggcttatacaacatttttcaggattt
tagaaagtttccctttgactgatccccacctgacccagtcttcacttagg
catgcctcctctcagcttttgaatcttagctgtttagtttctctgtgaag
cctcttctgactgccctgtccttgtacaagcttccacagtcttgtccttt
ctcccctcttccttcacagatgtaggttctacagttagcttgagtgacta
tgactcctatctcttcctctcatcattgattctaacctgggtttttggca
agaactgggggcagcttcctttccatgagagcacaatacctagtgttgta
gatgaaaactaaacatttgtttgaatgagtgaccgaaggcaagtggaaat
attttgactccagaatggggagactccagctatagcttacaggaaaccag
acagaaagagcgtcacccctaaggatgttccaagttaatttattttccct
gaggactcgtgaaagaactatatgcagtgttgggcaagggagggatagga
aaattaaccggaagaggcctaaatctgactgaagaagcagacagagcaga
cccagtgtggatcgttagatctcctgatggggttactgtagcagacaaaa
atcttcattcaccaaatgccttacgaatgactaaatctgcttgaatttag
acctatatctacagcccaaacctattgccttacaaaccccccacaagatg
gagggaagacagaccctccatggactgaacattggttc
agtgttaattggacatggaatatttacaacagtaacatttctgagaatgc
accccatccaattaactgacttgccactggacatgagatacagacatttt
gaggtctaagatcaatatataaaagtgatagtggtcccataatcagccat
caaacccagacactattgcatatgccagcaagattttgctgaagggatcc
tggtatagctgtctcgtatgaggctatgccagtgcccggcaaatacagaa
gtggatgctcacagtcatctataggatggaacacagggaccccaatggag
aagctatagaaagcacccaaggagctgaaggagtctacaactctataggt
ggaacaacaatatgaactaaccagtacccccagagctcatgtttctagct
gcatgtgtagcagaagatggcctagtcggccatcattgggaagagaggcc
ccctggtattgcaaactttatatgctccagtacaggggaataccagggcc
aagaagtaggagtgggtgggtaggggagcagggaagggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_28483900_28485089
seq2: B6Ng01-163B02.b_46_1233 (reverse)

seq1  GAACCAATG-TCAGCTCAATGGGAGTGTCTGTCTTTCCTCACTCTTGT-G  48
      ||||||||| |||| || || |||| ||||||||| ||||  |||||| |
seq2  GAACCAATGTTCAG-TCCAT-GGAGGGTCTGTCTTCCCTCCATCTTGTGG  48

seq1  GGGGTTTGTAAGGGCAATTAGGTTTGGGCTGTAGATATTAGGTCTAAAAT  98
      ||||||||||| ||||| ||||||||||||||||||| ||||||| ||||
seq2  GGGGTTTGTAA-GGCAA-TAGGTTTGGGCTGTAGATA-TAGGTCT-AAAT  94

seq1  TCAAGCAGATTTTAGTCATCTGT-AGGCATTTGTTGAAATGGAGATTTTT  147
      ||||||||| |||||||||  || ||||||||| || |||| ||||||||
seq2  TCAAGCAGA-TTTAGTCATTCGTAAGGCATTTGGTG-AATGAAGATTTTT  142

seq1  GTCTGCTACAGTAACCCCATCA-GAGATCTAACGATCCACACTGAGTCTG  196
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  GTCTGCTACAGTAACCCCATCAGGAGATCTAACGATCCACACTGGGTCTG  192

seq1  CTCTGTCTGCTTTCTTCAGTCAGATTTAGGCCTCTTCCGGTTAATTTTTC  246
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  CTCTGTCTGC-TTCTTCAGTCAGATTTAGGCCTCTTCCGGTTAA-TTTTC  240

seq1  CTATCCCTCCCTTG-CCAACACTGCATATAGTTCTTTCACGAGTCCTCAG  295
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTATCCCTCCCTTGCCCAACACTGCATATAGTTCTTTCACGAGTCCTCAG  290

seq1  GGAAAATAAATTAACTTGGAACATTCCTAGGGGTGACGCTCTTTCTGTCT  345
      |||||||||||||||||||||||| | |||||||||||||||||||||||
seq2  GGAAAATAAATTAACTTGGAACATCCTTAGGGGTGACGCTCTTTCTGTCT  340

seq1  GGTTTCCTGTAAGCTATAGCTGGAGTCTCCCCATTCTGGAGTCAAAATAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTGTAAGCTATAGCTGGAGTCTCCCCATTCTGGAGTCAAAATAT  390

seq1  TTCCACTTGCCTTCGGTCACTCATTC-AACAAATGTTTAGTTTTCATCTA  444
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCCACTTGCCTTCGGTCACTCATTCAAACAAATGTTTAGTTTTCATCTA  440

seq1  CAACACTAGGTATTGTGCTCTCATGGAAAGGAAGCTG-CCCCAGTTCTTG  493
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAACACTAGGTATTGTGCTCTCATGGAAAGGAAGCTGCCCCCAGTTCTTG  490

seq1  CC-AAAACCCAGGTTAGAATCAATGATGAGAGGAAGAGATAGGAGTCATA  542
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACCCAGGTTAGAATCAATGATGAGAGGAAGAGATAGGAGTCATA  540

seq1  GTCACTCAAGCTAACTGTAGAACCTACATCTGTGAAGGAAGAGGGGAGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCAAGCTAACTGTAGAACCTACATCTGTGAAGGAAGAGGGGAGAA  590

seq1  AGGACAAGACTGTGGAAGCTTGTACAAGGACAGGGCAGTCAGAAGAGGCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGACTGTGGAAGCTTGTACAAGGACAGGGCAGTCAGAAGAGGCT  640

seq1  TCACAGAGAAACTAAACAGCTAAGATTCAAAAGCTGAGAGGAGGCATGCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGAAACTAAACAGCTAAGATTCAAAAGCTGAGAGGAGGCATGCC  690

seq1  TAAGTGAAGACTGGGTCAGGTGGGGATCAGTCAAAGGGAAACTTTCTAAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAAGACTGGGTCAGGTGGGGATCAGTCAAAGGGAAACTTTCTAAA  740

seq1  ATCCTGAAAAATGTTGTATAAGCCACTGAAAATAAAGCATTGTTCTAAGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAAAAATGTTGTATAAGCCACTGAAAATAAAGCATTGTTCTAAGG  790

seq1  ACAAGACTACCCTATGGAATGGTTTGGAAGACTTATTGTGAAGAAATGAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACTACCCTATGGAATGGTTTGGAAGACTTATTGTGAAGAAATGAA  840

seq1  GGCATCTGCATTGTGAAGAAGTCCCTGACTATGGTCTTGGGATGGAGGGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTGCATTGTGAAGAAGTCCCTGACTATGGTCTTGGGATGGAGGGG  890

seq1  AGATTTCTTGGAGATGGTAACCTGGCTAATGATAATTTGCAAAAGCCCAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTTGGAGATGGTAACCTGGCTAATGATAATTTGCAAAAGCCCAG  940

seq1  ACGATGAAATGATGAAGAGGTAGGCGACAGCAACAGGGGTAAGTCAGGTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGAAATGATGAAGAGGTAGGCGACAGCAACAGGGGTAAGTCAGGTG  990

seq1  GACTCAGGCAGAAGCCACAGAGCATGTCCAGGGTGACCTCTAGGTTCTCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGGCAGAAGCCACAGAGCATGTCCAGGGTGACCTCTAGGTTCTCA  1040

seq1  GGAAGGCAGGAGAGTCTAAGCTCCAGGCTTCGAGCACAATAGACACTCTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAGGAGAGTCTAAGCTCCAGGCTTCGAGCACAATAGACACTCTG  1090

seq1  ACACAGGGCGTCTATCTGAGCTGGGCTGGGCTCACTTTGAACTTTTCTTT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGCGTCTATCTGAGCTGGGCTGGGCTCACTTTGAACTTTTCTTT  1140

seq1  CATTGGCCCTCTTGTTCTTACTCTAGTTTTTGAGCGTCTTTTGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCCCTCTTGTTCTTACTCTAGTTTTTGAGCGTCTTTTGAATTC  1188

seq1: chr16_28353755_28354303
seq2: B6Ng01-163B02.g_69_617

seq1  GAATTCAGTGTTAATTGGACATGGAATATTTACAACAGTAACATTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTTAATTGGACATGGAATATTTACAACAGTAACATTTCTGA  50

seq1  GAATGCACCCCATCCAATTAACTGACTTGCCACTGGACATGAGATACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACCCCATCCAATTAACTGACTTGCCACTGGACATGAGATACAGA  100

seq1  CATTTTGAGGTCTAAGATCAATATATAAAAGTGATAGTGGTCCCATAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAGGTCTAAGATCAATATATAAAAGTGATAGTGGTCCCATAATC  150

seq1  AGCCATCAAACCCAGACACTATTGCATATGCCAGCAAGATTTTGCTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCAAACCCAGACACTATTGCATATGCCAGCAAGATTTTGCTGAAG  200

seq1  GGATCCTGGTATAGCTGTCTCGTATGAGGCTATGCCAGTGCCCGGCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTGGTATAGCTGTCTCGTATGAGGCTATGCCAGTGCCCGGCAAAT  250

seq1  ACAGAAGTGGATGCTCACAGTCATCTATAGGATGGAACACAGGGACCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTGGATGCTCACAGTCATCTATAGGATGGAACACAGGGACCCCA  300

seq1  ATGGAGAAGCTATAGAAAGCACCCAAGGAGCTGAAGGAGTCTACAACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAGCTATAGAAAGCACCCAAGGAGCTGAAGGAGTCTACAACTCT  350

seq1  ATAGGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCATGTTT  400

seq1  CTAGCTGCATGTGTAGCAGAAGATGGCCTAGTCGGCCATCATTGGGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGCATGTGTAGCAGAAGATGGCCTAGTCGGCCATCATTGGGAAGA  450

seq1  GAGGCCCCCTGGTATTGCAAACTTTATATGCTCCAGTACAGGGGAATACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCCCTGGTATTGCAAACTTTATATGCTCCAGTACAGGGGAATACC  500

seq1  AGGGCCAAGAAGTAGGAGTGGGTGGGTAGGGGAGCAGGGAAGGGGGAGG  549
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAAGAAGTAGGAGTGGGTGGGTAGGGGAGCAGGGAAGGGGGAGG  549