BAC Information

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BAC

Clone NameB6Ng01-163L01
Chromosome16 (Build37)
Map Location 38,649,670 - 38,804,899
singlet/doubletdoublet
Overlap geneCdgap, B4galt4, LOC100043289, Upk1b
Upstream geneNdufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a
Downstream gene4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163L01.bB6Ng01-163L01.g
ACCDH956214DH956215
length4561,047
definitionDH956214|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L01, 5' end.DH956215|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,804,438 - 38,804,899)(38,649,670 - 38,650,717)
sequence
tgctacagcaaaatggtcttgttttccactgagtaggaggtgaacagaaa
tgggggcgataattatcttatcatagccacacgtcagtttggttgtcagt
ctaacattacgaatgttaaaagcagaaaataatttagagcaacacttaca
gagatgcaaacttcacataactggtgcttcggccacacgcgttctgcttt
cttcccaagcatgacttatgcagcaaccatgtttttccaagaccgaaggg
aaggcattcaccctaaacctcccaaacaagaaaattaatttctcatccag
tgccactctggtttgcttgcatgaggcagtgtgtgcaaggaacaaaacac
aaaaagcaatgtcaggctttttttctattttttatcttcaggtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgtatgtgtgttgtgtgtg
gggtgt
gaattctgaccctggaacgtgagtgatctgaagtgacgggatgtacacca
cgtgtctgaagagtgcttcttggtcaagggtcgggcacataataaacact
cgggtgcatggcgattagagaacgctataaacatgatagaaacggagaaa
taatgcggtgaatcccaggaatgctgcctagaccagtctggtggaaggca
ggttaataggggagtgttttaaaaacgatggccagggaagattgcattca
gtcttgatctctacatccaggtaagtcttgctaaacacaccctccatgat
ggtagtcctctttgcagacatgccctgtggcttctctagagtcagttcca
atccaggcagcgcccaggctagatctgcagctgcctttaggggcagacag
gactgcacagggcacctctgggtttatgtattggggtgggtgtatagtgc
tgagcacagtgtggactgtgttgtgggtactggcagcaccccacttaggg
cattgggctggcctagttcaccctgcacacagaagtctcatctgaggatt
tctgtttgtctgtctgtctgttgccactggaggctgctagactgtgtgta
atttgaaaatactccctccgacccactatctgtctgagaataacacttca
ctcttaaaggatatttaaggaatctataaggctgactgcccttctaacag
gccaggagtggctcataggatggagatctgtcaccctcaagcacattttc
aagcccggtttgtgagcaagaatagataacttaaaaatgcacaaaactcc
agtgtcactgcttatagggctttgttgacaaagaagaacactgttatcca
gataaggtctggcagaagatttagcctggcactggagaccaaggccacat
ttgcatgtgtggtctcatgtagaggacaggtcgacttggggatgttctca
aatcatttctctaattctctattttttaaaggaagagtctacaactgaac
ttggacctggaacttgctgttcaaccaaactggcttggctggcaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_38804438_38804899
seq2: B6Ng01-163L01.b_46_507 (reverse)

seq1  ACACCCCACACACAACACACATACAGCACACACACACACACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCACACACAACACACATACAGCACACACACACACACACACACACA  50

seq1  CACACACACACACACCTGAAGATAAAAAATAGAAAAAAAGCCTGACATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACCTGAAGATAAAAAATAGAAAAAAAGCCTGACATTG  100

seq1  CTTTTTGTGTTTTGTTCCTTGCACACACTGCCTCATGCAAGCAAACCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTGTTTTGTTCCTTGCACACACTGCCTCATGCAAGCAAACCAGA  150

seq1  GTGGCACTGGATGAGAAATTAATTTTCTTGTTTGGGAGGTTTAGGGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACTGGATGAGAAATTAATTTTCTTGTTTGGGAGGTTTAGGGTGAA  200

seq1  TGCCTTCCCTTCGGTCTTGGAAAAACATGGTTGCTGCATAAGTCATGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCCCTTCGGTCTTGGAAAAACATGGTTGCTGCATAAGTCATGCTT  250

seq1  GGGAAGAAAGCAGAACGCGTGTGGCCGAAGCACCAGTTATGTGAAGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAAGCAGAACGCGTGTGGCCGAAGCACCAGTTATGTGAAGTTTG  300

seq1  CATCTCTGTAAGTGTTGCTCTAAATTATTTTCTGCTTTTAACATTCGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGTAAGTGTTGCTCTAAATTATTTTCTGCTTTTAACATTCGTAA  350

seq1  TGTTAGACTGACAACCAAACTGACGTGTGGCTATGATAAGATAATTATCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGACTGACAACCAAACTGACGTGTGGCTATGATAAGATAATTATCG  400

seq1  CCCCCATTTCTGTTCACCTCCTACTCAGTGGAAAACAAGACCATTTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATTTCTGTTCACCTCCTACTCAGTGGAAAACAAGACCATTTTGCT  450

seq1  GTAGCAGAATTC  462
      ||||||||||||
seq2  GTAGCAGAATTC  462

seq1: chr16_38649670_38650717
seq2: B6Ng01-163L01.g_69_1115

seq1  GAATTCTGACCCTGGAACGTGAGTGATCTGAAGTGACGGGATGTACACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACCCTGGAACGTGAGTGATCTGAAGTGACGGGATGTACACCA  50

seq1  CGTGTCTGAAGAGTGCTTCTTGGTCAAGGGTCGGGCACATAATAAACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCTGAAGAGTGCTTCTTGGTCAAGGGTCGGGCACATAATAAACACT  100

seq1  CGGGTGCATGGCGATTAGAGAACGCTATAAACATGATAGAAACGGAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGCATGGCGATTAGAGAACGCTATAAACATGATAGAAACGGAGAAA  150

seq1  TAATGCGGTGAATCCCAGGAATGCTGCCTAGACCAGTCTGGTGGAAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCGGTGAATCCCAGGAATGCTGCCTAGACCAGTCTGGTGGAAGGCA  200

seq1  GGTTAATAGGGGAGTGTTTTAAAAACGATGGCCAGGGAAGATTGCATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATAGGGGAGTGTTTTAAAAACGATGGCCAGGGAAGATTGCATTCA  250

seq1  GTCTTGATCTCTACATCCAGGTAAGTCTTGCTAAACACACCCTCCATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGATCTCTACATCCAGGTAAGTCTTGCTAAACACACCCTCCATGAT  300

seq1  GGTAGTCCTCTTTGCAGACATGCCCTGTGGCTTCTCTAGAGTCAGTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCCTCTTTGCAGACATGCCCTGTGGCTTCTCTAGAGTCAGTTCCA  350

seq1  ATCCAGGCAGCGCCCAGGCTAGATCTGCAGCTGCCTTTAGGGGCAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGCAGCGCCCAGGCTAGATCTGCAGCTGCCTTTAGGGGCAGACAG  400

seq1  GACTGCACAGGGCACCTCTGGGTTTATGTATTGGGGTGGGTGTATAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCACAGGGCACCTCTGGGTTTATGTATTGGGGTGGGTGTATAGTGC  450

seq1  TGAGCACAGTGTGGACTGTGTTGTGGGTACTGGCAGCACCCCACTTAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAGTGTGGACTGTGTTGTGGGTACTGGCAGCACCCCACTTAGGG  500

seq1  CATTGGGCTGGCCTAGTTCACCCTGCACACAGAAGTCTCATCTGAGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGCTGGCCTAGTTCACCCTGCACACAGAAGTCTCATCTGAGGATT  550

seq1  TCTGTTTGTCTGTCTGTCTGTTGCCACTGGAGGCTGCTAGACTGTGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTGTCTGTCTGTCTGTTGCCACTGGAGGCTGCTAGACTGTGTGTA  600

seq1  ATTTGAAAATACTCCCTCCGACCCACTATCTGTCTGAGAATAACACTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAATACTCCCTCCGACCCACTATCTGTCTGAGAATAACACTTCA  650

seq1  CTCTTAAAGGATATTTAAGGAATCTATAAGGCTGACTGCCCTTCTAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAAGGATATTTAAGGAATCTATAAGGCTGACTGCCCTTCTAACAG  700

seq1  GCCAGGAGTGGCTCATAGGATGGAGATCTGTCACCCTCAAGCACATTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAGTGGCTCATAGGATGGAGATCTGTCACCCTCAAGCACATTTTC  750

seq1  AAGCCCGGTTTGTGAGCAAGAATAGATAACTTAAAAATGCACAAAACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCGGTTTGTGAGCAAGAATAGATAACTTAAAAATGCACAAAACTCC  800

seq1  AGTGTCACTGCTTATAGGGC-TTGTTGACAAAGAAGAACACTGTTATCCA  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTGTCACTGCTTATAGGGCTTTGTTGACAAAGAAGAACACTGTTATCCA  850

seq1  GATAAGG-CTGGCAGAAGATTTAGCCTGGCACTGGAGACCAAGGCCACAT  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGTCTGGCAGAAGATTTAGCCTGGCACTGGAGACCAAGGCCACAT  900

seq1  TTGCATGTGTGGTCTCATGTAGAGGACAGGGGTCGACTTGGGGATGTTCT  948
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  TTGCATGTGTGGTCTCATGTAGAGGACA--GGTCGACTTGGGGATGTTCT  948

seq1  CAAATCATTTCTCTAAATTCTCTATTTTTTAAAGGTAGAGTCTAGCACTG  998
      |||||||||||||| |||||||||||||||||||| ||||||||  ||||
seq2  CAAATCATTTCTCT-AATTCTCTATTTTTTAAAGGAAGAGTCTACAACTG  997

seq1  AACTTGGACCTGGAACTTGCTGTTTCAGCCATACTGGCTT-GCTGGCAAT  1047
      |||||||||||||||||||||| |||| ||| |||||||| |||||||||
seq2  AACTTGGACCTGGAACTTGCTG-TTCAACCAAACTGGCTTGGCTGGCAAT  1046

seq1  A  1048
      |
seq2  A  1047