BAC Information

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BAC

Clone NameB6Ng01-164M19
Chromosome16 (Build37)
Map Location 53,937,193 - 54,053,145
singlet/doubletdoublet
Overlap geneLOC433027
Upstream geneLOC667895
Downstream geneLOC100043442, LOC100043449, LOC667927
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164M19.bB6Ng01-164M19.g
ACCDH957029DH957030
length1,1631,071
definitionDH957029|Mus musculus domesticus DNA, BAC clone: B6Ng01-164M19, 5' end.DH957030|Mus musculus domesticus DNA, BAC clone: B6Ng01-164M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,937,193 - 53,938,381)(54,052,075 - 54,053,145)
sequence
gaattcaacaacaggggtcagcggcttctgtcctgggttggatgcaaata
tctgcatctgactctttcagctgcttgttgggtttttcagagggcagtca
tgatagatccctttttttgtgagggctctattgcctaagtaatagtgtca
gacctactcattaggagatttttaagtctagaaagctatcttatacacca
tgttggtgtatgggagtaatgtatactaggagagttgtgagtttgtcttt
accgcagcagaaatgaattaggggctatgcttattgtgaaaggttcgttt
ttttacatggagttctatgttatacaggataatgacttttcatcttacac
ctcaacagattatcaagaccgaaggatttagacttatttataattatctc
atttctttcccacctgccctctgctccgtcatttcccctcaactctatct
tctattatctttctcctcgtcattatttatattttctatcttcgttaaat
gtttcgaaatgaggatctgaagattaatcaaaagatgtgcagccaggctt
gcccattctagaaattacagagatagattgttaagaatctctaatgaaat
aagaaaagtaaacaatgtttagtacttaagctttcaaaatatggattctg
aaagaaattatttatgcaaaacttccaacaataattatagctattcttaa
tataatatcaagtattattaaagataaagattagacacagaaaattactc
atatttttaaaatttaaataatatttacgatagaaagatgaacattaaaa
acagagtgaattaagctggcactaggtattatttcattatgtaaatttca
ttgtgcaaatttcattgtatattaattatatttaataattatgttttgaa
agagtaggaataaactatgattgactgaaaatttctaagttgtattattc
attaacccattgactttattgattataaattcaaataatgagttataact
atatgttactcaacataggatcaaggttaggtttaatccactattattta
tttggatttctgtctggtagtaagtaggttgctaagaattggaagggtgg
aaatgccacgacagtcccgtgaaagtatttgcaaaagttacctcaagaaa
cctctggccattt
gaattccagggacaagaagtaggagtgggtgggtcagggagcagggcagg
gagagggtataggggacttttgggatagcatttgaaatgtaaatgaagaa
aatatctaataaaatattggaaaataaataaataaaaaatatccatgtag
aaaatctcaaaacaataaaaaagatatcaggcagaaactaatttattaca
attatagaaacttgcctgataggaaagctttgatgttgaaggtatttcca
tgtttagctggccatggaaaatggtcaagaaacagtaattttccttacat
ataatgtatatagttaatctaatgaactggacaaaaagtttgcttttgat
cgacagaaacaaaccataaatgcagtgttaaatcctaatagttctgtttt
gagaatcgcaagtgtattagtgttgaaagcaggttcacaatagattagat
tatttgaaaggacagttactaggtattctgataaatccagaagggcaaca
cagcacatggagtacatgttttaacttgaaagtaaactagattaaatgct
atagttactagccatgttttttacttaaatgtggtctgttaattgttctt
tttttcttatttttctattactttatttaaaaagttcatattatattctt
tcacttgtagatatcctaacaatgtattaatattgcatatttagaaaagg
agaaatttctattgggaagaattaaaatgtgtgtgaattatttcatatgc
acatgaagattgatttaaaaaaaataaacatgagctctacaaatataatc
caatgctataacatgaattttttgatactgaatgatactcaatttaattt
tgttattttaagttttattatcaaccctaataaattgtctaacaaagaca
ctgtttctaatttgtgaataattctcatttcacataaattattttatttt
ttaataacaaagttcctttactgaaattaattatacccattaatgctgat
gaacttggattttgaatttgtaaaaaaaaaaaaaaaaaaaaccctattta
tttattttacctcgatatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_53937193_53938381
seq2: B6Ng01-164M19.b_47_1209

seq1  GAATTCAACAACAGGGGTCAGCGGCTTCTGTCCTGGGTTGGATGCAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAACAGGGGTCAGCGGCTTCTGTCCTGGGTTGGATGCAAATA  50

seq1  TCTGCATCTGACTCTTTCAGCTGCTTGTTGGGTTTTTCAGAGGGCAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCTGACTCTTTCAGCTGCTTGTTGGGTTTTTCAGAGGGCAGTCA  100

seq1  TGATAGATCCCTTTTTTTGTGAGGGCTCTATTGCCTAAGTAATAGTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGATCCCTTTTTTTGTGAGGGCTCTATTGCCTAAGTAATAGTGTCA  150

seq1  GACCTACTCATTAGGAGATTTTTAAGTCTAGAAAGCTATCTTATACACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTACTCATTAGGAGATTTTTAAGTCTAGAAAGCTATCTTATACACCA  200

seq1  TGTTGGTGTATGGGAGTAATGTATACTAGGAGAGTTGTGAGTTTGTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTGTATGGGAGTAATGTATACTAGGAGAGTTGTGAGTTTGTCTTT  250

seq1  ACCGCAGCAGAAATGAATTAGGGGCTATGCTTATTGTGAAAGGTTCGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCAGCAGAAATGAATTAGGGGCTATGCTTATTGTGAAAGGTTCGTTT  300

seq1  TTTTACATGGAGTTCTATGTTATACAGGATAATGACTTTTCATCTTACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATGGAGTTCTATGTTATACAGGATAATGACTTTTCATCTTACAC  350

seq1  CTCAACAGATTATCAAGACCGAAGGATTTAGACTTATTTATAATTATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAGATTATCAAGACCGAAGGATTTAGACTTATTTATAATTATCTC  400

seq1  ATTTCTTTCCCACCTGCCCTCTGCTCCGTCATTTCCCCTCAACTCTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTCCCACCTGCCCTCTGCTCCGTCATTTCCCCTCAACTCTATCT  450

seq1  TCTATTATCTTTCTCCTCGTCATTATTTATATTTTCTATCTTCGTTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTATCTTTCTCCTCGTCATTATTTATATTTTCTATCTTCGTTAAAT  500

seq1  GTTTCGAAATGAGGATCTGAAGATTAATCAAAAGATGTGCAGCCAGGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCGAAATGAGGATCTGAAGATTAATCAAAAGATGTGCAGCCAGGCTT  550

seq1  GCCCATTCTAGAAATTACAGAGATAGATTGTTAAGAATCTCTAATGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTCTAGAAATTACAGAGATAGATTGTTAAGAATCTCTAATGAAAT  600

seq1  AAGAAAAGTAAACAATGTTTAGTACTTAAGCTTTCAAAATATGGATTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGTAAACAATGTTTAGTACTTAAGCTTTCAAAATATGGATTCTG  650

seq1  AAAGAAATTATTTATGCAAAACTTCCAACAATAATTATAGCTATTCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTATTTATGCAAAACTTCCAACAATAATTATAGCTATTCTTAA  700

seq1  TATAATATCAAGTATTATTAAAGATAAAGATTAGACACAGAAAATTACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATCAAGTATTATTAAAGATAAAGATTAGACACAGAAAATTACTC  750

seq1  ATA-TTTTAAAATTTAAATAATATTTACGATAGAAAGATGAACATTAAAA  799
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTAAAATTTAAATAATATTTACGATAGAAAGATGAACATTAAAA  800

seq1  ACAGAGTGAATTAAGCTGGCACTAGGTATTATTTCATTATGTAAATTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGAATTAAGCTGGCACTAGGTATTATTTCATTATGTAAATTTCA  850

seq1  TTGTGCAAATTTCATTGTATATTAATTATATTTAATTAATTATGTTTTGA  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGTGCAAATTTCATTGTATATTAATTATATTTAA-TAATTATGTTTTGA  899

seq1  AAGAGTAGGAATAAACTATGATTGACTGAAAATTTTCTAAAGTTGTATTA  949
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  AAGAGTAGGAATAAACTATGATTGACTGAAAA-TTTCT-AAGTTGTATTA  947

seq1  ATCAATTAACCCATTGACTTTATTGATTATAAATTCAAAATAAATGAGTT  999
       || |||||||||||||||||||||||||||||||||||   |||||| |
seq2  TTC-ATTAACCCATTGACTTTATTGATTATAAATTCAAA--TAATGAG-T  993

seq1  TATAACTTATATGTTACTCAACATTAGGATCAATGTTAGGTTTAATCAAC  1049
      |||||| |||||||||||||||| ||||||||| ||||||||||||| ||
seq2  TATAAC-TATATGTTACTCAACA-TAGGATCAAGGTTAGGTTTAATCCAC  1041

seq1  TATTAATTATATTTGTATATCATGTTTGTTAGTAAAGTTAGGTTGCTAAG  1099
      |||||  | |||||| || || ||| || ||||||   ||||||||||||
seq2  TATTA--TTTATTTGGATTTC-TGTCTGGTAGTAA--GTAGGTTGCTAAG  1086

seq1  TAATTTTGTATAGGGTTGAAAATGTACAAGGATCAAGTACTGTGAAAGTT  1149
       |   ||| | ||||| ||||   | | | ||   ||| | |||||||| 
seq2  AA---TTGGA-AGGGTGGAAA---TGCCACGA--CAGTCCCGTGAAAGT-  1126

seq1  ATTTTGCAAAAAGTTATCCACAAGAAAACCTCT-GCCATTT  1189
        ||||| |||||||| || |||| |||||||| |||||||
seq2  -ATTTGC-AAAAGTTA-CCTCAAG-AAACCTCTGGCCATTT  1163

seq1: chr16_54052075_54053145
seq2: B6Ng01-164M19.g_69_1139 (reverse)

seq1  AAAATATGGAGTGTAAATAAATAAATAAGGTTTTTTTTTTTTTTTTTTTT  50
      ||||||| |||   |||||||||||| ||| |||||||||||||||||||
seq2  AAAATATCGAGGTAAAATAAATAAAT-AGGGTTTTTTTTTTTTTTTTTTT  49

seq1  TACAAATTCAAAATCAAAGTTCATCAAGCATTAATGGGTATAATT-ATTT  99
      ||||||||||||||| ||||||||| ||||||||||||||||||| ||||
seq2  TACAAATTCAAAATCCAAGTTCATC-AGCATTAATGGGTATAATTAATTT  98

seq1  CAGTAAAGGAACTTTGTTATTAAAAAATAAAAT-ATTTATGTGAAATGAG  148
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGTAAAGGAACTTTGTTATTAAAAAATAAAATAATTTATGTGAAATGAG  148

seq1  AATTATTCACAAATTAGAAACAGTGTCTTTGTTAGACATTTTATTAGGGT  198
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATTATTCACAAATTAGAAACAGTGTCTTTGTTAGACAATTTATTAGGGT  198

seq1  TGATAATAAAACTTAAAATAACAAAATTAAATTGAGTATCATTCAGTATC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATAAAACTTAAAATAACAAAATTAAATTGAGTATCATTCAGTATC  248

seq1  AAAAAATTCATGTTATAGCATTGGATTATATTTGTAGAGCTCATGTTTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTCATGTTATAGCATTGGATTATATTTGTAGAGCTCATGTTTAT  298

seq1  TTTTTTTAAATCAATCTTCATGTGCATATGAAATAATTCACACACATTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAATCAATCTTCATGTGCATATGAAATAATTCACACACATTTT  348

seq1  AATTCTTCCCAATAGAAATTTCTCCTTTTCTAAATATGCAATATTAATAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCCCAATAGAAATTTCTCCTTTTCTAAATATGCAATATTAATAC  398

seq1  ATTGTTAGGATATCTACAAGTGAAAGAATATAATATGAACTTTTTAAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAGGATATCTACAAGTGAAAGAATATAATATGAACTTTTTAAATA  448

seq1  AAGTAATAGAAAAATAAGAAAAAAAGAACAATTAACAGACCACATTTAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATAGAAAAATAAGAAAAAAAGAACAATTAACAGACCACATTTAAG  498

seq1  TAAAAAACATGGCTAGTAACTATAGCATTTAATCTAGTTTACTTTCAAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACATGGCTAGTAACTATAGCATTTAATCTAGTTTACTTTCAAGT  548

seq1  TAAAACATGTACTCCATGTGCTGTGTTGCCCTTCTGGATTTATCAGAATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATGTACTCCATGTGCTGTGTTGCCCTTCTGGATTTATCAGAATA  598

seq1  CCTAGTAACTGTCCTTTCAAATAATCTAATCTATTGTGAACCTGCTTTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTAACTGTCCTTTCAAATAATCTAATCTATTGTGAACCTGCTTTCA  648

seq1  ACACTAATACACTTGCGATTCTCAAAACAGAACTATTAGGATTTAACACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAATACACTTGCGATTCTCAAAACAGAACTATTAGGATTTAACACT  698

seq1  GCATTTATGGTTTGTTTCTGTCGATCAAAAGCAAACTTTTTGTCCAGTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATGGTTTGTTTCTGTCGATCAAAAGCAAACTTTTTGTCCAGTTC  748

seq1  ATTAGATTAACTATATACATTATATGTAAGGAAAATTACTGTTTCTTGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATTAACTATATACATTATATGTAAGGAAAATTACTGTTTCTTGAC  798

seq1  CATTTTCCATGGCCAGCTAAACATGGAAATACCTTCAACATCAAAGCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCATGGCCAGCTAAACATGGAAATACCTTCAACATCAAAGCTTT  848

seq1  CCTATCAGGCAAGTTTCTATAATTGTAATAAATTAGTTTCTGCCTGATAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCAGGCAAGTTTCTATAATTGTAATAAATTAGTTTCTGCCTGATAT  898

seq1  CTTTTTTATTGTTTTGAGATTTTCTACATGGATATTTTTTATTTATTTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTATTGTTTTGAGATTTTCTACATGGATATTTTTTATTTATTTAT  948

seq1  TTTCCAATATTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATATTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATC  998

seq1  CCAAAAGTCCCCTATACCCTCTCCCTGCCCTGCTCCCTGACCCACCCACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGTCCCCTATACCCTCTCCCTGCCCTGCTCCCTGACCCACCCACT  1048

seq1  CCTACTTCTTGTCCCTGGAATTC  1071
      |||||||||||||||||||||||
seq2  CCTACTTCTTGTCCCTGGAATTC  1071