BAC Information

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BAC

Clone NameB6Ng01-165B01
Chromosome16 (Build37)
Map Location 35,728,939 - 35,871,944
singlet/doubletdoublet
Overlap geneDirc2, Hspbap1, Parp14
Upstream geneMylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663
Downstream geneLOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165B01.bB6Ng01-165B01.g
ACCDH957222DH957223
length315867
definitionDH957222|Mus musculus domesticus DNA, BAC clone: B6Ng01-165B01, 5' end.DH957223|Mus musculus domesticus DNA, BAC clone: B6Ng01-165B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,871,645 - 35,871,944)(35,728,939 - 35,729,805)
sequence
gaattctgaagcaggaaagtcaggtcagatgccctcgggtggtcccccaa
gtgagcagggagcatcctgagaggatcgttttccttctcttatacagcgt
gggttttcaggtatgcagaaactatcctagtgatggagcagggctcagct
gtagctcaggtggagtgcgggcggggcccagctctggagctgctaaggag
gtggcctggaggctagagctcgggtggaggattgactggcttctgttgag
agcaggagaacaaagtgcctgggggtgggtgggtggtagctcaatgtaaa
aaaaaaatgtgtgtg
gaattcaaagccagaactgggcaacttagtgaggccctgtttcaaggggg
ctgagatttcatgacagtagtagagcccgtgcctagcctgtgtgaggccc
tgaagaggttttggggtgctgtgatcctggctccataccacaattccacc
tctgttgtctttgctctactttcaactctgtggcaggctaccaactaagc
cacttggagctctaggtatgcaggccatttttcagccttcaggagcagga
aggaatgaccctatttagggctactagcaagcctcctcctcattcctctt
ttctatttttctgcaagaagggtgggcaagagacttgaacaggcagtcac
aaaataggacattcaaatatccgctaacagttgaaaaagaaagtccagat
gtccctgtgaatgcacacaaggctcagtcattagcacatctatgagaagg
cttcaaacactgctgtatagccacgtgttctattgacgggcagcaggaga
agcaccagctgccgctgacaggactgtaagggatacagctgcctcagacg
ggacttacactgcctgtcaaaggaggcatacggaaaaagcagcagttcca
ttccaaaacacacaagcaaaaggacagtgcatgagaatggtcacacagcc
ccactgtgacagcaaagagtgggagacaacccaagggctcattaaaagca
gatggccagactgttcactcagagcaatggtggcacagtggtatgctggg
tctctatctgcctttcctaccagcaaagagaatgcagtacaggcatcgag
catggtgaaaaggtttaatctcatgggtaattcttccgagtttgtatatg
tgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_35871645_35871944
seq2: B6Ng01-165B01.b_41_355 (reverse)

seq1  CACACACA---------------GAGCTACCACCCACCCACCCCCAGGCA  35
      ||||||||               |||||||||||||||||||||||||||
seq2  CACACACATTTTTTTTTTACATTGAGCTACCACCCACCCACCCCCAGGCA  50

seq1  CTTTGTTCTCCTGCTCTCAACAGAAGCCAGTCAATCCTCCACCCGAGCTC  85
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTCCTGCTCTCAACAGAAGCCAGTCAATCCTCCACCCGAGCTC  100

seq1  TAGCCTCCAGGCCACCTCCTTAGCAGCTCCAGAGCTGGGCCCCGCCCGCA  135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCCAGGCCACCTCCTTAGCAGCTCCAGAGCTGGGCCCCGCCCGCA  150

seq1  CTCCACCTGAGCTACAGCTGAGCCCTGCTCCATCACTAGGATAGTTTCTG  185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCTGAGCTACAGCTGAGCCCTGCTCCATCACTAGGATAGTTTCTG  200

seq1  CATACCTGAAAACCCACGCTGTATAAGAGAAGGAAAACGATCCTCTCAGG  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTGAAAACCCACGCTGTATAAGAGAAGGAAAACGATCCTCTCAGG  250

seq1  ATGCTCCCTGCTCACTTGGGGGACCACCCGAGGGCATCTGACCTGACTTT  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCCTGCTCACTTGGGGGACCACCCGAGGGCATCTGACCTGACTTT  300

seq1  CCTGCTTCAGAATTC  300
      |||||||||||||||
seq2  CCTGCTTCAGAATTC  315

seq1: chr16_35728939_35729805
seq2: B6Ng01-165B01.g_66_932

seq1  GAATTCAAAGCCAGAACTGGGCAACTTAGTGAGGCCCTGTTTCAAGGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCAGAACTGGGCAACTTAGTGAGGCCCTGTTTCAAGGGGG  50

seq1  CTGAGATTTCATGACAGTAGTAGAGCCCGTGCCTAGCCTGTGTGAGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTTCATGACAGTAGTAGAGCCCGTGCCTAGCCTGTGTGAGGCCC  100

seq1  TGAAGAGGTTTTGGGGTGCTGTGATCCTGGCTCCATACCACAATTCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGGTTTTGGGGTGCTGTGATCCTGGCTCCATACCACAATTCCACC  150

seq1  TCTGTTGTCTTTGCTCTACTTTCAACTCTGTGGCAGGCTACCAACTAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTCTTTGCTCTACTTTCAACTCTGTGGCAGGCTACCAACTAAGC  200

seq1  CACTTGGAGCTCTAGGTATGCAGGCCATTTTTCAGCCTTCAGGAGCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGAGCTCTAGGTATGCAGGCCATTTTTCAGCCTTCAGGAGCAGGA  250

seq1  AGGAATGACCCTATTTAGGGCTACTAGCAAGCCTCCTCCTCATTCCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGACCCTATTTAGGGCTACTAGCAAGCCTCCTCCTCATTCCTCTT  300

seq1  TTCTATTTTTCTGCAAGAAGGGTGGGCAAGAGACTTGAACAGGCAGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTTTCTGCAAGAAGGGTGGGCAAGAGACTTGAACAGGCAGTCAC  350

seq1  AAAATAGGACATTCAAATATCCGCTAACAGTTGAAAAAGAAAGTCCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGACATTCAAATATCCGCTAACAGTTGAAAAAGAAAGTCCAGAT  400

seq1  GTCCCTGTGAATGCACACAAGGCTCAGTCATTAGCACATCTATGAGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTGAATGCACACAAGGCTCAGTCATTAGCACATCTATGAGAAGG  450

seq1  CTTCAAACACTGCTGTATAGCCACGTGTTCTATTGACGGGCAGCAGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACACTGCTGTATAGCCACGTGTTCTATTGACGGGCAGCAGGAGA  500

seq1  AGCACCAGCTGCCGCTGACAGGACTGTAAGGGATACAGCTGCCTCAGACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGCTGCCGCTGACAGGACTGTAAGGGATACAGCTGCCTCAGACG  550

seq1  GGACTTACACTGCCTGTCAAAGGAGGCATACGGAAAAAGCAGCAGTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTACACTGCCTGTCAAAGGAGGCATACGGAAAAAGCAGCAGTTCCA  600

seq1  TTCCAAAACACACAAGCAAAAGGACAGTGCATGAGAATGGTCACACAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAACACACAAGCAAAAGGACAGTGCATGAGAATGGTCACACAGCC  650

seq1  CCACTGTGACAGCAAAGAGTGGGAGACAACCCAAGGGCTCATTAAAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGACAGCAAAGAGTGGGAGACAACCCAAGGGCTCATTAAAAGCA  700

seq1  GATGGCCAGACTGTTCACTCAGAGCAATGGTGGCACAGTGGTATGCTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCAGACTGTTCACTCAGAGCAATGGTGGCACAGTGGTATGCTGGG  750

seq1  TCTCTATCTGCCTTTCCTACCAGCAAAGAGAATGCAGTACAGGCATCGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATCTGCCTTTCCTACCAGCAAAGAGAATGCAGTACAGGCATCGAG  800

seq1  CATGGTGAAAAGGTTTAATCTCATGGGTAATTCTTCCGAGTTTGTATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGAAAAGGTTTAATCTCATGGGTAATTCTTCCGAGTTTGTATATG  850

seq1  TGTGTGTGTGTGTGTGT  867
      |||||||||||||||||
seq2  TGTGTGTGTGTGTGTGT  867