BAC Information

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BAC

Clone NameB6Ng01-165H03
Chromosome16 (Build37)
Map Location 38,322,222 - 38,454,742
singlet/doubletdoublet
Overlap gene4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh
Upstream geneStxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2
Downstream geneCd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165H03.bB6Ng01-165H03.g
ACCDH957501DH957502
length9081,027
definitionDH957501|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H03, 5' end.DH957502|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,322,222 - 38,323,130)(38,453,702 - 38,454,742)
sequence
gaattcactgaagagaattttaagtaagattttaatttttgaattgattt
tactttttctgaaaaacatttttaatgatcttttaaaaatgtgattgagt
tgtttagagtacatacatatcaaccgctgatttgagcacattactagttt
aattcttatttttttcccatgaatttgaggcagctggaaagctttcagag
atggtttttaaattctttctttttttaatcagatctttgggaatttagaa
tatcattgtttgattatattcacctccctcctcaaccttccattttcctc
cccacccacccgagtgtcctccttttgtttgtttgttttttacccataat
gccccatttgtgttgtccacaacacatactcttgggtatgtggccttcca
ctggggtgtggcaactaccaggctcagcactcataaaaggtcatagaatg
tttaaaaaattaattacggtcttagtcagggtttctattcctggacaaaa
catcatgaccaagaagcaagttggggaggaaagggtttattcggcttaca
cttccatactgctgttcatcaccaaaggaagtcaggactggaactcaagc
aggtcaggaagcaggagctgatgcagaggccatggagggatgttctttac
tggcttgctcagcctgctctcttatagaaccaagactaccaacccagaga
tggcaccacccacaagaggacctccccgcttgatcattaattgaaaaatg
tcttatagttggatctcatgaaggcatttcccccaactgaagctcctttt
ctctgtgataactccagcctgtgtcaggttgacacaaaactagccagtac
aattaccttccattttaatgaatgtagatatgcgtgtgcatgcctgcgtg
ggtgcatt
gaattctctttttccagggggaggggagtcctctctcttaagatctttaa
gtgattcaatgaggcctgcccacattatggaggataatccactgtacctc
atgtttattgatataaaagctaatctcggctgtaaaataccttcccatct
ggaggaagatttgaacaatctgggtgctgtggtccagccaagaggacata
cagttggctgctcagatatcatcttagtcttcctgaatggaccacatagc
agctgcttttggctttccacgtctccgtccctggctttccagtttccgca
ctctctgcgtttattattctgaggagttttctggtctatcctgtgctctg
ttctcctttggcccttgctgctgttccactgttagtctctgttagagagt
ccaacccaccctgcatatgaactacttcctgtcagtgtgcaggggtgcta
gtgcacggtccctaagctttatcagtcaaaacactcatagtgttacagtg
tcatccgcactcaacacatttgggtctatgcagtgtcaaagctgtcttgg
actgttctgttttctgatcctcagtgaatcttttctcttttaaaacagtt
ttaaccgcgatctggagagagagcagctggaccccagggcctcacccttt
ttattgtatcaaactataagttggcttattgtggaagtgttaatgtttgt
ggacatttggagtcacataagcagttgataaagccaggctttaagaagga
tattaaattctatttaaaaaatgaccccattgttttaaaatctatacatg
accataaagactgatatatgtatcagggtaacatctagtttctatttttc
tctaaatatcttagatatactatagaaaaaaaatctaaaagatataactc
gtgtggagttgtatactgaattttagccctctaaaggtagagcagaggat
cacgagtttgacgacagctagctcaaaaaagaatcatgatttagttttct
ttcattcctctctttactcggaaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_38322222_38323130
seq2: B6Ng01-165H03.b_43_950

seq1  GAATTCACTGAAGAGAATTTTAAGTAAGATTTTAATTTTTGAATTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAGAGAATTTTAAGTAAGATTTTAATTTTTGAATTGATTT  50

seq1  TACTTTTTCTGAAAAACATTTTTAATGATCTTTTAAAAATGTGATTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTCTGAAAAACATTTTTAATGATCTTTTAAAAATGTGATTGAGT  100

seq1  TGTTTAGAGTACATACATATCAACCGCTGATTTGAGCACATTAGTAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTTTAGAGTACATACATATCAACCGCTGATTTGAGCACATTACTAGTTT  150

seq1  AATTCTTATTTTTTTCCCATGAATTTGAGGCAGCTGGAAAGCTTTCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTATTTTTTTCCCATGAATTTGAGGCAGCTGGAAAGCTTTCAGAG  200

seq1  ATGGTTTTTAAATTCTTTCTTTTTTTAATCAGATCTTTGGGAATTTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTTAAATTCTTTCTTTTTTTAATCAGATCTTTGGGAATTTAGAA  250

seq1  TAGCATTGTTTGATTATATTCACCTCCCTCCTCAACCTTCCATTTTCCTC  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTGTTTGATTATATTCACCTCCCTCCTCAACCTTCCATTTTCCTC  300

seq1  CCCACCCACCCGAGTGTCCTCCTTTTGTTTGTTTGTTTTTTACCCATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACCCGAGTGTCCTCCTTTTGTTTGTTTGTTTTTTACCCATAAT  350

seq1  GCCCCATTTGTGTTGTCCACAACACATACTCTTGGGTATGTGGCCTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATTTGTGTTGTCCACAACACATACTCTTGGGTATGTGGCCTTCCA  400

seq1  CTGGGGTGTGGCAACTACCAGGCTCAGCACTCATAAAAGGTCATAGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTGTGGCAACTACCAGGCTCAGCACTCATAAAAGGTCATAGAATG  450

seq1  TTTAAAAAATTAATTACGGTCTTAGTCAGGGTTTCTATTCCTGGACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATTAATTACGGTCTTAGTCAGGGTTTCTATTCCTGGACAAAA  500

seq1  CATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACA  550

seq1  CTTCCATACTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATACTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGC  600

seq1  AGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTAC  650

seq1  TGGCTTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAACCCAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAACCCAGAGA  700

seq1  TGGCACCACCCACAAGAGGACCTCCCCGCTTGATCATTAATTGAGAAAAT  750
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGCACCACCCACAAGAGGACCTCCCCGCTTGATCATTAATTGA-AAAAT  749

seq1  GTCTTATAGTTGGATCTCATGAAGGCATTTCCCCCAACTGAAGCTCC-TT  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCTTATAGTTGGATCTCATGAAGGCATTTCCCCCAACTGAAGCTCCTTT  799

seq1  TCTCTGTGATAACTCCAGCCTGTGTCAAGTTGACACAAAACTAGCCAGTA  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTCTGTGATAACTCCAGCCTGTGTCAGGTTGACACAAAACTAGCCAGTA  849

seq1  CAATTACCTTCCATTTTAAGTGAATGTAGATATGCGTGTGCATGCATGCG  899
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  CAATTACCTTCCATTTTAA-TGAATGTAGATATGCGTGTGCATGCCTGCG  898

seq1  TGTGTGCATT  909
      || |||||||
seq2  TGGGTGCATT  908

seq1: chr16_38453702_38454742
seq2: B6Ng01-165H03.g_67_1093 (reverse)

seq1  AGCTTTCCGAGTAAAGAGAGGAATGAAGGAAAATTAAATTTTGATTTATT  50
      ||||||||||||||||||||||||||| ||||| |||||  ||| || ||
seq2  AGCTTTCCGAGTAAAGAGAGGAATGAAAGAAAACTAAATCATGA-TTCTT  49

seq1  TTTTGAGACTAGGCTGGTCTCAAACTCGTGATCCTCCTGCCTCTACCTTT  100
      ||||||| ||| ||||   |||||||||||||||| ||| ||||||||||
seq2  TTTTGAG-CTA-GCTGTCGTCAAACTCGTGATCCT-CTG-CTCTACCTTT  95

seq1  AGAATGCTAGAATTTCAGTCTTACAACACCACACCTAGTTTATATCTTTT  150
      |||  |||| || ||||||  |||||| ||||| | || |||||||||||
seq2  AGAGGGCTA-AAATTCAGT-ATACAACTCCACA-CGAG-TTATATCTTTT  141

seq1  AGAATATTTTTTCTATATTATATCTAAAGATATTTTAGAGAAAAATAGAA  200
      || || ||||||||||| ||||||| |||||| |||||||||||||||||
seq2  AG-ATTTTTTTTCTATAGTATATCT-AAGATA-TTTAGAGAAAAATAGAA  188

seq1  ACTAGATGTTACCCCTGATACATATATCAGTCTTTATGGT-ATGCATATG  249
      ||||||||||| |||||||||||||||||||||||||||| ||| ||| |
seq2  ACTAGATGTTA-CCCTGATACATATATCAGTCTTTATGGTCATGTATA-G  236

seq1  ATTTTAAAACAATGGGGTCATTTTTTAAATAGAATTTTATATCCTTTCTT  299
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  ATTTTAAAACAATGGGGTCATTTTTTAAATAGAATTTAATATCC-TTCTT  285

seq1  AAAAACTGGCTTTATCAACTACTAATGTGACTCCAAATGTCCACAAACAT  349
      |||  ||||||||||||||| || ||||||||||||||||||||||||||
seq2  AAAGCCTGGCTTTATCAACTGCTTATGTGACTCCAAATGTCCACAAACAT  335

seq1  TAACACTTCCACAATAAGCCAACTTCTAGTTTGATACAATAAAAAGGGTG  399
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAACACTTCCACAATAAGCCAACTTATAGTTTGATACAATAAAAAGGGTG  385

seq1  AGGCCCTGGGGTCCAGCTGCTCTCTCACCAGATCGCGGTTAAAACTGTTT  449
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGCCCTGGGGTCCAGCTGCTCTCTCTCCAGATCGCGGTTAAAACTGTTT  435

seq1  TAAAAGAGAAAAGATTCACTGAGGATCAGAAAACAGAACAGTCCAAGACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGAAAAGATTCACTGAGGATCAGAAAACAGAACAGTCCAAGACA  485

seq1  GCTTTGACACTGCATAGACCCAAATGTGTTGAGTGCGGATGACACTGTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGACACTGCATAGACCCAAATGTGTTGAGTGCGGATGACACTGTAA  535

seq1  CACTATGAGTGTTCTGACTGATAAAGCTTAGGGACCGTGCACTAGCACCC  599
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACTATGAGTGTTTTGACTGATAAAGCTTAGGGACCGTGCACTAGCACCC  585

seq1  CTGCACACTGACAGGAAGTAGTTCATATGCAGGGTGGGTTGGACTCTCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACTGACAGGAAGTAGTTCATATGCAGGGTGGGTTGGACTCTCTA  635

seq1  ACAGAGACTAACAGTGGAACAGCAGCAAGGGCCAAAGGAGAACAGAGCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACTAACAGTGGAACAGCAGCAAGGGCCAAAGGAGAACAGAGCAC  685

seq1  AGGATAGACCAGAAAACTCCTCAGAATAATAAACGCAGAGAGTGCGGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGACCAGAAAACTCCTCAGAATAATAAACGCAGAGAGTGCGGAAA  735

seq1  CTGGAAAGCCAGGGACGGAGACGTGGAAAGCCAAAAGCAGCTGCTATGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGCCAGGGACGGAGACGTGGAAAGCCAAAAGCAGCTGCTATGTG  785

seq1  GTCCATTCAGGAAGACTAAGATGATATCTGAGCAGCTAACTGTATGTCCT  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTCCATTCAGGAAGACTAAGATGATATCTGAGCAGCCAACTGTATGTCCT  835

seq1  CTTGGCTGGACCACAGCACCCAGATTGTTCAAATCTTCCTCCAGATGGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGGACCACAGCACCCAGATTGTTCAAATCTTCCTCCAGATGGGA  885

seq1  AGGTATTTTACAGCCGAGATTAGCTTTTATATCAATAAACATGAGGTACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTTACAGCCGAGATTAGCTTTTATATCAATAAACATGAGGTACA  935

seq1  GTGGATTATCCTCCATAATGTGGGCAGGCCTCATTGAATCACTTAAAGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTATCCTCCATAATGTGGGCAGGCCTCATTGAATCACTTAAAGAT  985

seq1  CTTAAGAGAGAGGACTCCCCTCCCCCTGGAAAAAGAGAATTC  1041
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAGAGAGGACTCCCCTCCCCCTGGAAAAAGAGAATTC  1027