BAC Information

Click to search

BAC

Clone NameB6Ng01-165O04
Chromosome16 (Build37)
Map Location 54,973,701 - 54,974,893
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433027, LOC100043442, LOC100043449, LOC667927
Downstream geneLOC436421, Zpld1, Nfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165O04.bB6Ng01-165O04.g
ACCDH957822DH957823
length1,1801,191
definitionDH957822|Mus musculus domesticus DNA, BAC clone: B6Ng01-165O04, 5' end.DH957823|Mus musculus domesticus DNA, BAC clone: B6Ng01-165O04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctctgaagacctatatttagaaaactagtgacagcttagttcc
tttgtgatcttgtgggaatgttcaggaatggatcttatttggaggttttt
aggccacgggagacatggccccaagagagtatgtgggacccctcttcttt
ttgttctctttcacattctcaccagcaagtgagcagctttgttctgctct
gtggtccttgtgatgatgctaaatgatactgtgtgggaacctcaaaatag
tgagggcaaaactggtgacatggcaccagaaaggcacttgttgccaagcc
tgagggcatggtaattcatcccccacatacaagctgtcctctgaaggcca
caagtgacccatgacttgaacatgcccatacccctaacacacaaacaatc
caacacacacacactcacacacacaccactcacatgcaaaccaccaccac
caccaccaccaccaccaccaacaacaacaacaacaacaatgaaatcctta
gtaaatgaaaattttctatgttgattgtgtcagggatttgttgcagaaac
tggaaagctgaaacttcaaacctttcttctccctccctttttctctctgt
cttttctccgctctcacctctatcttcccaatcttatttctttgttttct
taccatttttttttgtttatttgtgtctatttgttgttttcatgtttttt
gagacagtttctctgtgtgtagtcctgactgttctggaacttgtttgtag
gccaggctaggcttgaactcacagagagatctgccttcctttgccttcca
agacctaggattaaaggtgtgcactaacaaaatacccatggaaggagttg
cagagacaaagtttggagctaagatgaaaggatggactatccagagacta
ccccacctggggatccatcccataatcagccatcaaacgcagacactatt
gcacatgctgacagaccctggtaaggctgtttcttgtgaggctatgccat
gcctggcaatacagaaatggatgctcacagtcatctattggatgaacaag
gccccccaatggaggagctagagaaagcacccaaggagctgaatggggtc
tgcacctatagtagaacaacattatggactacagttacccataggttcat
gttctagctgtattgtatacaagatgtcct
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcatcatccttaatcatcagggaaatgcaactcaaaacaaccctgagat
tccactcacaccagtcagaatggctaagataaaaaattcaggtgacagca
gatgctggcaaggatgtgaagaaagaggaatgctcctccagtattggtgg
gattgcaagcttgtacaacaactctggaaatcagtctggcggtttctcaa
ataattggacatagtactaccggaggttccagcaatacctctcctgggta
tatatccagaagatgttccaactggtaagaaggccacatactccactatg
ttcatagcagccttatttataatagtcagaagctggaaagaacccagatc
tccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaa
tggatgaacttggagggcatcatcctgagtaaggtaactcaatcacaaaa
gaactcacatgatatgtactcactgataagtggatattatcccagaaact
tagaatacccaagatagaagatacaatttgcgcaacaccttaagctcagg
aagaatgaagaccaaggtgtggatactttgccccttcttttaattgggag
caaggcacccatggaagaagctacagagacagagtttggagctgagacga
caggacggaccatctagaggctgccatacctggggatccatcccataatc
agcctccaaacgctgacaccattgcaaacactagcaagattttgctgaaa
ggaccctgatatagctgtctcttgtgagactatgctggggcctagcaaac
acagaagtggatgctcacaatcagctattggatggatcacaggtccccat
ggaggagctggaggagtacccaggagctaaagggatcttcaaccttatag
gtggaacacatatgactaccagtacagtacccccccccccccaccaagag
cttgtgtctttagctgcatatggtatcaaagaatggctgggtcgacagca
gtgaaagatagggcccaattgttgagcgaacttatgtgctcagtacagga
tgccaggccaagaatggaattggctgggctgtcggatacgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_54973701_54974893
seq2: B6Ng01-165O04.b_42_1221 (reverse)

seq1  AGGCCATCTTCTGATACATATACAGCTAGAGACATGAACTCTGGGGTTAC  50
      ||| |||||| | ||||| ||||||||||| ||||||||    |||| ||
seq2  AGGACATCTTGT-ATACA-ATACAGCTAGA-ACATGAACCTATGGGTAAC  47

seq1  TGGTTAGTTCATATTGTTGTTCTACCTATAGGGTTGCAGA-CCCATTCAG  99
      ||  |||| |||| |||||||||| |||||||  |||||| |||||||||
seq2  TG--TAGTCCATAATGTTGTTCTA-CTATAGG--TGCAGACCCCATTCAG  92

seq1  CTCCTTGGGTGCTTTCTCTAGCTCCTCCATTGGGGGGCCCTGTGTTCCAT  149
      ||||||||||||||||||||||||||||||||||||||| ||   | |||
seq2  CTCCTTGGGTGCTTTCTCTAGCTCCTCCATTGGGGGGCCTTG---TTCAT  139

seq1  CCAATAGATGACTGTGAGCATCCATTTCTGTATTTGCCAGGCATTGGCAT  199
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  CCAATAGATGACTGTGAGCATCCATTTCTGTA-TTGCCAGGCA-TGGCAT  187

seq1  AGCCTCACAAGAAACAGCCTTACCAGGGTCCTGTCAGCATGTGCAATAGT  249
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCCTCACAAGAAACAGCCTTACCAGGGT-CTGTCAGCATGTGCAATAGT  236

seq1  GTCTGCGTTTGATGGCTGATTATGGGATGGATCCCCAGGTGGGGTAGTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCGTTTGATGGCTGATTATGGGATGGATCCCCAGGTGGGGTAGTCT  286

seq1  CTGGATAGTCCATCCTTTCATCTTAGCTCCAAACTTTGTCTCTGCAACTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATAGTCCATCCTTTCATCTTAGCTCCAAACTTTGTCTCTGCAACTC  336

seq1  CTTCCATGGGTATTTTGTTAGTGCACACCTTTAATCCTAGGTCTTGGAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGGGTATTTTGTTAGTGCACACCTTTAATCCTAGGTCTTGGAAG  386

seq1  GCAAAGGAAGGCAGATCTCTCTGTGAGTTCAAGCCTAGCCTGGCCTACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGAAGGCAGATCTCTCTGTGAGTTCAAGCCTAGCCTGGCCTACAA  436

seq1  ACAAGTTCCAGAACAGTCAGGACTACACACAGAGAAACTGTCTCAAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTCCAGAACAGTCAGGACTACACACAGAGAAACTGTCTCAAAAAA  486

seq1  CATGAAAACAACAAATAGACACAAATAAACAAAAAAAAATGGTAAGAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAACAACAAATAGACACAAATAAACAAAAAAAAATGGTAAGAAAA  536

seq1  CAAAGAAATAAGATTGGGAAGATAGAGGTGAGAGCGGAGAAAAGACAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAATAAGATTGGGAAGATAGAGGTGAGAGCGGAGAAAAGACAGAG  586

seq1  AGAAAAAGGGAGGGAGAAGAAAGGTTTGAAGTTTCAGCTTTCCAGTTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGGGAGGGAGAAGAAAGGTTTGAAGTTTCAGCTTTCCAGTTTCT  636

seq1  GCAACAAATCCCTGACACAATCAACATAGAAAATTTTCATTTACTAAGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAATCCCTGACACAATCAACATAGAAAATTTTCATTTACTAAGGA  686

seq1  TTTCATTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTG  736

seq1  GTGGTTTGCATGTGAGTGGTGTGTGTGTGAGTGTGTGTGTGTTGGATTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTGCATGTGAGTGGTGTGTGTGTGAGTGTGTGTGTGTTGGATTGT  786

seq1  TTGTGTGTTAGGGGTATGGGCATGTTCAAGTCATGGGTCACTTGTGGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTTAGGGGTATGGGCATGTTCAAGTCATGGGTCACTTGTGGCCT  836

seq1  TCAGAGGACAGCTTGTATGTGGGGGATGAATTACCATGCCCTCAGGCTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGACAGCTTGTATGTGGGGGATGAATTACCATGCCCTCAGGCTTG  886

seq1  GCAACAAGTGCCTTTCTGGTGCCATGTCACCAGTTTTGCCCTCACTATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAGTGCCTTTCTGGTGCCATGTCACCAGTTTTGCCCTCACTATTT  936

seq1  TGAGGTTCCCACACAGTATCATTTAGCATCATCACAAGGACCACAGAGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTCCCACACAGTATCATTTAGCATCATCACAAGGACCACAGAGCA  986

seq1  GAACAAAGCTGCTCACTTGCTGGTGAGAATGTGAAAGAGAACAAAAAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGCTGCTCACTTGCTGGTGAGAATGTGAAAGAGAACAAAAAGAA  1036

seq1  GAGGGGTCCCACATACTCTCTTGGGGCCATGTCTCCCGTGGCCTAAAAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTCCCACATACTCTCTTGGGGCCATGTCTCCCGTGGCCTAAAAAC  1086

seq1  CTCCAAATAAGATCCATTCCTGAACATTCCCACAAGATCACAAAGGAACT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATAAGATCCATTCCTGAACATTCCCACAAGATCACAAAGGAACT  1136

seq1  AAGCTGTCACTAGTTTTCTAAATATAGGTCTTCAGAGAGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTCACTAGTTTTCTAAATATAGGTCTTCAGAGAGAATTC  1180