BAC Information

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BAC

Clone NameB6Ng01-166G24
Chromosome16 (Build37)
Map Location 13,808,621 - 13,938,976
singlet/doubletdoublet
Overlap geneRrn3, Ntan1, Pdxdc1
Upstream geneLOC622553, Ercc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757
Downstream geneMpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166G24.bB6Ng01-166G24.g
ACCDH958221DH958222
length1,2271,187
definitionDH958221|Mus musculus domesticus DNA, BAC clone: B6Ng01-166G24, 5' end.DH958222|Mus musculus domesticus DNA, BAC clone: B6Ng01-166G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,808,621 - 13,809,838)(13,937,765 - 13,938,976)
sequence
gaattcactagggtgactgagggagagggaggaagtacagtcagtaactg
gcatccttagagtgttgcagggctgcgctgctaagaagcacacgtgacct
ggactgtccttggtgcccgttaggaggcgagctcctgtggtctctctcct
gtgtgccctcagccctctctgagcccgcagatactgattgcaggttgctg
tgtaatctgttacccaagaggaactggcttctcttttcagaaggttgtac
tgtatggcagcaggccttgagctttactcgtgcgttgctgccagtaactt
gtttataatgtctttattctgggacgtggtgtgctagagctcaagcccac
cctaagcatccgccctgccacagagcccttaaattgggtttttgcatatg
taataatttgtgcttttaaaggtatcttaacccctcttttttttttaatc
aaaggtctacagtatcttcagagtctaaattttgagcgcattgtgttgag
ccagctgaacccactgaagatctgcctgccgcaagtggttaatttctttg
ctgctatcacaaagtgagttgtttcctttatggacatctaaaagtcaagg
gggtggagcttggtgctggatgccgttctttcgctttggcactgagtaaa
ttccagtacattctcaggagcagtgcatatgaagaaaccagcaatgctgt
tattgcaagagtaccatagccagccacgtattgtattctttagtgacact
ggagttctgcttgtacccagcgcagcctcggcactcgaaatcttaatgga
caaactaatactaaacaggcaaactcgtgtgctgccaggtctaactaagc
cgcagatccttattctagggagacaggtattagtgacagagcaaactggg
gagaccgtgataggtcaggttgggataagtgagtgagtatggctctcaga
agcacgttgacgatggtaaagattctgaatgcagcaatgaattcagagtc
cagcagtaacaaatctgaggtgttctggaaaggttcatggcacttcctcc
cccagctaagttctggtacacagagctgtgggactggcacgggcttcaga
acttctgacacaggcattggcggggtcagggaatttaccgtattggcacg
aatttgcctctcttagagaaatagtgggcgtgaattaatgggaaaacaag
gcctctttcctggcgcatcatatcttc
gaattcatatagaagaaaaacataagatgataactggctatttggtctat
ttgtggtgtccttgcttgtatttctaagtgggagtggaggcataacagtc
aagggttcaagattatttccaactatacagtgagtctgagacaagcttgg
actctatagactctgattttataaaccaaaatgaggggcagcaaggacag
ctctggggtaaatgctcatgacttcaatctccagaacccatgtggcagac
tgctacaaagtgttctatgaccttcccaaatgccatgtgcacttatatat
aaatatgcacacagaaagaaagacacaaacacagagaggcagggagtaaa
aaaaaaggaagaaggcagtcaaggagaaggaaactgaaaggtaagggaga
agaaggtggcaatctgtagaccaaagaaagaggagtcagaataaaaccca
tccgaccttcctgaactgttttgttttgggttttggtttttcgagacagg
gtttctctgtgtagccctggctgtcctggaactcactctgtaaagcaggc
tagactccaatgcagaaatctgcctgcctctgcctcccaagtgctggtgg
gattaaaggcgtgcgccaccactgcccagactttttttttttcttcctga
actgttaaaaaaagttgtttgaaaaatgtttttctactgctcctggtctg
caatcttattatcacagtgtacacatactaatagatccttcctctccagt
ccctggaattctgccagtgcctgtgtgcttttattgtgcctgttttgtga
accccaaaagaccaccaaagagtcgattctgatgcaatcgcactagggtc
tctttattataagctcgagctcaggcttactcacttctgaccctgacaca
gcagacaggttggtgaagcagccctgagctagttcaggacattgaggcta
cacaaagaaactgactcaaaaaaaaatcaaattactcttggttgtataaa
attttcagatccggggctagcaacacagaaagtggatgatcagtcagcta
ttgatagatccaacggctctaatgcaggagctaagattactaagagctaa
gaaacttgcaccttaggttgaacacaattgactaccgatattcagaatct
tgttctctagctgcatgtgtatccaaagagtggcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_13808621_13809838
seq2: B6Ng01-166G24.b_44_1270

seq1  GAATTCACTAGGGTGACTGAGGGAGAGGGAGGAAGTACAGTCAGTAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGGGTGACTGAGGGAGAGGGAGGAAGTACAGTCAGTAACTG  50

seq1  GCATCCTTAGAGTGTTGCAGGGCTGCGCTGCTAAGAAGCACACGTGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTTAGAGTGTTGCAGGGCTGCGCTGCTAAGAAGCACACGTGACCT  100

seq1  GGACTGTCCTTGGTGCCCGTTAGGAGGCGAGCTCCTGTGGTCTCTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTCCTTGGTGCCCGTTAGGAGGCGAGCTCCTGTGGTCTCTCTCCT  150

seq1  GTGTGCCCTCAGCCCTCTCTGAGCCCGCAGATACTGATTGCAGGTTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCCTCAGCCCTCTCTGAGCCCGCAGATACTGATTGCAGGTTGCTG  200

seq1  TGTAATCTGTTACCCAAGAGGAACTGGCTTCTCTTTTCAGAAGGTTGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCTGTTACCCAAGAGGAACTGGCTTCTCTTTTCAGAAGGTTGTAC  250

seq1  TGTATGGCAGCAGGCCTTGAGCTTTACTCGTGCGTTGCTGCCAGTAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGCAGCAGGCCTTGAGCTTTACTCGTGCGTTGCTGCCAGTAACTT  300

seq1  GTTTATAATGTCTTTATTCTGGGACGTGGTGTGCTAGAGCTCAAGCCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAATGTCTTTATTCTGGGACGTGGTGTGCTAGAGCTCAAGCCCAC  350

seq1  CCTAAGCATCCGCCCTGCCACAGAGCCCTTAAATTGGGTTTTTGCATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCATCCGCCCTGCCACAGAGCCCTTAAATTGGGTTTTTGCATATG  400

seq1  TAATAATTTGTGCTTTTAAAGGTATCTTAACCCCTCTTTTTTTTTTAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTTGTGCTTTTAAAGGTATCTTAACCCCTCTTTTTTTTTTAATC  450

seq1  AAAGGTCTACAGTATCTTCAGAGTCTAAATTTTGAGCGCATTGTGTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCTACAGTATCTTCAGAGTCTAAATTTTGAGCGCATTGTGTTGAG  500

seq1  CCAGCTGAACCCACTGAAGATCTGCCTGCCGCAAGTGGTTAATTTCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGAACCCACTGAAGATCTGCCTGCCGCAAGTGGTTAATTTCTTTG  550

seq1  CTGCTATCACAAAGTGAGTTGTTTCCTTTATGGACATCTAAAAGTCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATCACAAAGTGAGTTGTTTCCTTTATGGACATCTAAAAGTCAAGG  600

seq1  GGGTGGAGCTTGGTGCTGGATGCCGTTCTTTCGCTTTGGCACTGAGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAGCTTGGTGCTGGATGCCGTTCTTTCGCTTTGGCACTGAGTAAA  650

seq1  TTCCAGTACATTCTCAGGAGCAGTGCATATGAAGAAACCAGCAATGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTACATTCTCAGGAGCAGTGCATATGAAGAAACCAGCAATGCTGT  700

seq1  TATTGCAAGAGTACCATAGCCAGCCACGTATTGTATTCTTTAGTGACACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAAGAGTACCATAGCCAGCCACGTATTGTATTCTTTAGTGACACT  750

seq1  GGAGTTCTGCTTGTACCCAGCGCAGCCTCGGCACTCGAAATCTTAATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCTGCTTGTACCCAGCGCAGCCTCGGCACTCGAAATCTTAATGGA  800

seq1  CAAACTAATACTAAACAGGCAAACTCGTGTGCTGCCAGGTCTAACTAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAATACTAAACAGGCAAACTCGTGTGCTGCCAGGTCTAACTAAGC  850

seq1  CGCAGATCCTTATTCTAGGGAGACAGGTATTAGTGACAGAGCAAACTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGATCCTTATTCTAGGGAGACAGGTATTAGTGACAGAGCAAACTGGG  900

seq1  GAGACCGTGATAGGTCAGGGTTGGGATAAGTGAGTGAGTATGGCTCTCAG  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  GAGACCGTGATAGGTCA-GGTTGGGATAAGTGAGTGAGTATGGCTCTCA-  948

seq1  GAAGCACGTTGACGATGGTAAAGATTCTGAATGCAGCAATGAATTCAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACGTTGACGATGGTAAAGATTCTGAATGCAGCAATGAATTCAGAG  998

seq1  TCCAGCAGTAACAAATCTGAGGTGTTCTGGAAA-GTTCATGGCACTTCCT  1049
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCAGCAGTAACAAATCTGAGGTGTTCTGGAAAGGTTCATGGCACTTCCT  1048

seq1  CCCCCAGCTAAGTTCT-GTACACAGAGCTGT-GGACTGGGCAC-GGCTTC  1096
      |||||||||||||||| |||||||||||||| ||||| ||||| ||||||
seq2  CCCCCAGCTAAGTTCTGGTACACAGAGCTGTGGGACT-GGCACGGGCTTC  1097

seq1  AG-ACTTCTGACCACA-GCA-TGGCGTGAGTCAGGGATTTTACTGTAT--  1141
      || |||||||| |||| ||| ||||| | |||||||| ||||| ||||  
seq2  AGAACTTCTGA-CACAGGCATTGGCG-GGGTCAGGGAATTTACCGTATTG  1145

seq1  GCACAGATTTG-CTCTCTTAGAGAAATACAGTGGCGTGA--TTATGGAAA  1188
      ||||  ||||| ||||||||||||||||  | |||||||  | |||| ||
seq2  GCACGAATTTGCCTCTCTTAGAGAAATAGTG-GGCGTGAATTAATGGGAA  1194

seq1  ACAAAGGCTTCTTTCCTG--CCATCAT-TCTTC  1218
      |  ||||| |||||||||   |||||| |||||
seq2  AACAAGGCCTCTTTCCTGGCGCATCATATCTTC  1227

seq1: chr16_13937765_13938976
seq2: B6Ng01-166G24.g_66_1251 (reverse)

seq1  AGGCCA-TCTTTTGATACATATGCAGCTAGAGACAAGAGATCCGGGGTAC  49
      |||||| ||||| |||||| ||||||||||||| |  |||| | |  || 
seq2  AGGCCACTCTTTGGATACACATGCAGCTAGAGA-ACAAGATTCTGAATA-  48

seq1  TGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGC-AGTTCCCTTTAG  98
      | | ||| ||| |||| ||||| ||||| |||  ||| |||| |  ||||
seq2  TCGGTAG-TCA-ATTG-TGTTCAACCTA-AGG--TGCAAGTTTC--TTAG  90

seq1  CTCCTTGGGTAATATCTCTAGCTCCTGCATTGGGGGCCGTGTGATCTATC  148
      |||  |  ||||| |   |||||||||||||  | |||||  ||||||| 
seq2  CTC--TTAGTAATCT---TAGCTCCTGCATT-AGAGCCGTTGGATCTAT-  133

seq1  CAATAGCTGACTGTGATCATCCAC-TTCTGTGTTTGCTAGGCCCCGGGAT  197
      |||||||||||  ||||||||||| ||||||| |||||||  ||| ||||
seq2  CAATAGCTGAC--TGATCATCCACTTTCTGTG-TTGCTAG--CCCCGGAT  178

seq1  CTTGAAAATTTTATACAACCAAGAGTAATTTTGATTTTTTTTTTTGAGTC  247
      | |||||||||||||||||||||||||| |||||  ||||||||||||||
seq2  C-TGAAAATTTTATACAACCAAGAGTAA-TTTGA--TTTTTTTTTGAGTC  224

seq1  AGTTTCTTTGTGTAGCCTCAATTGTCCTGGAACTAGCTCAGGGCTGCTTC  297
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  AGTTTCTTTGTGTAGCCTCAA-TGTCCT-GAACTAGCTCAGGGCTGCTTC  272

seq1  ACCAACCTGTCCTGCTGTGTCAGGGTCAGAAGTGAGTAAGCCTGAGCTCG  347
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCTGT-CTGCTGTGTCAGGGTCAGAAGTGAGTAAGCCTGAGCTCG  321

seq1  AGCTTATAATAAAGAGACCCTAGTGCGATTGCATCAGAATCGACTCTTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATAATAAAGAGACCCTAGTGCGATTGCATCAGAATCGACTCTTTG  371

seq1  GTGGTCTTTTGGGGTTCACAAAACAGGCACAATAAAAGCACACAGGCACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTTTTGGGGTTCACAAAACAGGCACAATAAAAGCACACAGGCACT  421

seq1  GGCAGAATTCCAGGGACTGGAGAGGAAGGATCTATTAGTATGTGTACACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAATTCCAGGGACTGGAGAGGAAGGATCTATTAGTATGTGTACACT  471

seq1  GTGATAATAAGATTGCAGACCAGGAGCAGTAGAAAAACATTTTTCAAACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAATAAGATTGCAGACCAGGAGCAGTAGAAAAACATTTTTCAAACA  521

seq1  ACTTTTTTTAACAGTTCAGGAAGAAAAAAAAAAAGTCTGGGCAGTGGTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTAACAGTTCAGGAAGAAAAAAAAAAAGTCTGGGCAGTGGTGG  571

seq1  CGCACGCCTTTAATCCCACCAGCACTTGGGAGGCAGAGGCAGGCAGATTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACGCCTTTAATCCCACCAGCACTTGGGAGGCAGAGGCAGGCAGATTT  621

seq1  CTGCATTGGAGTCTAGCCTGCTTTACAGAGTGAGTTCCAGGACAGCCAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTGGAGTCTAGCCTGCTTTACAGAGTGAGTTCCAGGACAGCCAGG  671

seq1  GCTACACAGAGAAACCCTGTCTCGAAAAACCAAAACCCAAAACAAAACAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGAGAAACCCTGTCTCGAAAAACCAAAACCCAAAACAAAACAG  721

seq1  TTCAGGAAGGTCGGATGGGTTTTATTCTGACTCCTCTTTCTTTGGTCTAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAGGTCGGATGGGTTTTATTCTGACTCCTCTTTCTTTGGTCTAC  771

seq1  AGATTGCCACCTTCTTCTCCCTTACCTTTCAGTTTCCTTCTCCTTGACTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCCACCTTCTTCTCCCTTACCTTTCAGTTTCCTTCTCCTTGACTG  821

seq1  CCTTCTTCCTTTTTTTTTACTCCCTGCCTCTCTGTGTTTGTGTCTTTCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCCTTTTTTTTTACTCCCTGCCTCTCTGTGTTTGTGTCTTTCTT  871

seq1  TCTGTGTGCATATTTATATATAAGTGCACATGGCATTTGGGAAGGTCATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGCATATTTATATATAAGTGCACATGGCATTTGGGAAGGTCATA  921

seq1  GAACACTTTGTAGCAGTCTGCCACATGGGTTCTGGAGATTGAAGTCATGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTTGTAGCAGTCTGCCACATGGGTTCTGGAGATTGAAGTCATGA  971

seq1  GCATTTACCCCAGAGCTGTCCTTGCTGCCCCTCATTTTGGTTTATAAAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTACCCCAGAGCTGTCCTTGCTGCCCCTCATTTTGGTTTATAAAAT  1021

seq1  CAGAGTCTATAGAGTCCAAGCTTGTCTCAGACTCACTGTATAGTTGGAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCTATAGAGTCCAAGCTTGTCTCAGACTCACTGTATAGTTGGAAA  1071

seq1  TAATCTTGAACCCTTGACTGTTATGCCTCCACTCCCACTTAGAAATACAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTGAACCCTTGACTGTTATGCCTCCACTCCCACTTAGAAATACAA  1121

seq1  GCAAGGACACCACAAATAGACCAAATAGCCAGTTATCATCTTATGTTTTT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGACACCACAAATAGACCAAATAGCCAGTTATCATCTTATGTTTTT  1171

seq1  CTTCTATATGAATTC  1212
      |||||||||||||||
seq2  CTTCTATATGAATTC  1186