BAC Information

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BAC

Clone NameB6Ng01-166M04
Chromosome16 (Build37)
Map Location 16,295,992 - 16,382,968
singlet/doubletdoublet
Overlap geneYars2, Dnm1l, LOC665743
Upstream geneLOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003
Downstream geneFgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166M04.bB6Ng01-166M04.g
ACCDH958446DH958447
length1,1551,103
definitionDH958446|Mus musculus domesticus DNA, BAC clone: B6Ng01-166M04, 5' end.DH958447|Mus musculus domesticus DNA, BAC clone: B6Ng01-166M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,295,992 - 16,297,153)(16,381,860 - 16,382,968)
sequence
gaattccaagtccagggtcggctcaaggactacctagggcattggtgaag
gccaggaagcaaagtttgattttgcttaggtatttggtaagtcattgctt
ggaggcacctataataaaacaatactgaaagaaagcacacagatccattc
acaaggataagcattcattattcgggatgccatggttccaggagactaag
tttccgtgaacttttcgccttgggactgcatccaagcttttgagcctgtc
actcgagtcactactggagtgggtgtagcagtttctcatctagctgaatg
gagtcacatggttcccacacaagcagcaaaactagaataaaggaacacag
actctggaaagagccttacctcagagatcctgttgcacatagaaggtgtc
tggttccatgaccgggtgctaggaggaaggcagtgagaagcagacaataa
aagctgcctgcctccagctgaggtgcacaagcagtttgtttctgcagaag
tccccccttcccctaggctctctcctacagcaagtgtggtgaggtttgtt
tctgcattttccctcagaagctctgctttccccgacccctgcctccccat
cccaccttgcagtaaactcggggttctttctacctccctgctgctccgag
aggactcaagaagccatgggtggcagcctgagtaaggcaaatgacaaaaa
ctcctcagtttcagtggcaccaaggccagcactctcccagataaccaggt
gcagctggtgcctatccttgaagaaaggagattagggtcccacacttaaa
tcatagaaaagaggtaatcagaggtcatagacagttatggccagccataa
aactagttcctgatagtcccccgaagacactctttaatccccctctcagc
atcatgattctgccccaccgaatgtctgaattatgacttacctctcctgc
cttcctccacttcaccctaagcagtcaggagtttctaactatgctgtata
taattgctaaaacacccaagcttgggggtcacacctccagacctacactg
tgaggaggtttgtgatctgagtcagaactcgaataaagactttttgcaag
ttgcagtggacttcaagtcttgagctttctgggcttctaagaggtggagc
atagc
gaattcctcaggctgaattccagatactagaagccctgcattggttgagg
catatttggatccagagaattggctggtaagcccagaaccctggtagtta
tataagtctgaataatattttagaagaaactaaggattattccctgactt
ctgccagtcccaggatacatagtaagccagtcacaatgaaatcaccattc
aggatgcaggagagtctggctagtactcaggagatgcagtaagggcaggc
agctgagtcagcacaggctgtgctatagaaacagacgtagtgatggtgag
aaaacaaagtacactgccagagaaggctgttttcaaacgtgtgaagcctg
tacctggtacgtgccagaaaatcaggagggcatgcaaggaccagccatgg
ctgactcaatcccctttaggtccagagctggggtgaggagctcttgggtt
catagcttctcctttggactagaggagagaaggcacatgcaaatgttacc
tccatctgccaattactcaaggtctgaagtaaaagaagactgaaaagtac
aaaatttatgcctggtggaactgaacagtggtatgacctggggcaaatga
agtgaataatgctctccagtccacactattaacgcagagcacatagtgcc
gcctttaactttgtatctttgtgacaggggtcttggcctctctatagctt
tgcctggcctggaactcatcatgtagacaaggctagcttcaagttcagag
agatccacttgcctctgcttcccaaatactgggtgggactaaagacaggt
accaccacaactggcaagagtgttcctttttttttttttttttttcagtg
ttccaattttaagagagtttatgatctcacaaaaaccttcccaatctatt
tttacctggttttaaaggtcttatgatttcagcttttggagtgagatcct
tgtgaactctgcacttaagctctgtgtcattggtattagcaacatcgtgt
tctctcagagcttatgatttcaaagatcactcatagggaataataacacc
agtgaaattaaatattatcatcaacaatggctttgtttagtcatggttac
tac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_16295992_16297153
seq2: B6Ng01-166M04.b_43_1197

seq1  GAATTCCAAGTCCAGGGTCGGCTCAAGGACTACCTAGGGCATTGGTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTCCAGGGTCGGCTCAAGGACTACCTAGGGCATTGGTGAAG  50

seq1  GCCAGGAAGCAAAGTTTGATTTTGCTTAGGTATTTGGTAAGTCATTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAGCAAAGTTTGATTTTGCTTAGGTATTTGGTAAGTCATTGCTT  100

seq1  GGAGGCACCTATAATAAAACAATACTGAAAGAAAGCACACAGATCCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACCTATAATAAAACAATACTGAAAGAAAGCACACAGATCCATTC  150

seq1  ACAAGGATAAGCATTCATTATTCGGGATGCCATGGTTCCAGGAGACTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGATAAGCATTCATTATTCGGGATGCCATGGTTCCAGGAGACTAAG  200

seq1  TTTCCGTGAACTTTTCGCCTTGGGACTGCATCCAAGCTTTTGAGCCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGTGAACTTTTCGCCTTGGGACTGCATCCAAGCTTTTGAGCCTGTC  250

seq1  ACTCGAGTCACTACTGGAGTGGGTGTAGCAGTTTCTCATCTAGCTGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGAGTCACTACTGGAGTGGGTGTAGCAGTTTCTCATCTAGCTGAATG  300

seq1  GAGTCACATGGTTCCCACACAAGCAGCAAAACTAGAATAAAGGAACACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACATGGTTCCCACACAAGCAGCAAAACTAGAATAAAGGAACACAG  350

seq1  ACTCTGGAAAGAGCCTTACCTCAGAGATCCTGTTGCACATAGAAGGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGAAAGAGCCTTACCTCAGAGATCCTGTTGCACATAGAAGGTGTC  400

seq1  TGGTTCCATGACCGGGTGCTAGGAGGAAGGCAGTGAGAAGCAGACAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCATGACCGGGTGCTAGGAGGAAGGCAGTGAGAAGCAGACAATAA  450

seq1  AAGCTGCCTGCCTCCAGCTGAGGTGCACAAGCAGTTTGTTTCTGCAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCCTGCCTCCAGCTGAGGTGCACAAGCAGTTTGTTTCTGCAGAAG  500

seq1  TCCCCCCTTCCCCTAGGCTCTCTCCTACAGCAAGTGTGGTGAGGTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTTCCCCTAGGCTCTCTCCTACAGCAAGTGTGGTGAGGTTTGTT  550

seq1  TCTGCATTTTCCCTCAGAAGCTCTGCTTTCCCCGACCCCTGCCTCCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTTTCCCTCAGAAGCTCTGCTTTCCCCGACCCCTGCCTCCCCAT  600

seq1  CCCACCTTGCAGTAAACTCGGGGTTCTTTCTACCTCCCTGCTGCTCCGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTTGCAGTAAACTCGGGGTTCTTTCTACCTCCCTGCTGCTCCGAG  650

seq1  AGGACTCAAGAAGCCATGGGTGGCAGCCTGAGTAAGGCAAATGACAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCAAGAAGCCATGGGTGGCAGCCTGAGTAAGGCAAATGACAAAAA  700

seq1  CTCCTCAGTTTCAGTGGCACCAAGGCCAGCACTCTCCCAGATAACCAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGTTTCAGTGGCACCAAGGCCAGCACTCTCCCAGATAACCAGGT  750

seq1  GCAGCTGGTGCCTATCCTTGAAGAAAGGAGATTAGGGTCCCACACTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGTGCCTATCCTTGAAGAAAGGAGATTAGGGTCCCACACTTAAA  800

seq1  TCATAGAAAAGAGGTAATCAGAGGTCATAGACAGTTATGGCCAGCCATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAAAAGAGGTAATCAGAGGTCATAGACAGTTATGGCCAGCCATAA  850

seq1  AACTAGTTCCTGATAGTCCCCCGAAGACACTCTTTAATCCCCCTCTCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTTCCTGATAGTCCCCCGAAGACACTCTTTAATCCCCCTCTCAGC  900

seq1  ATCATGATTCTGCCCCACCGAATGTCTGAATTATGACTTACCTCTCCTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGATTCTGCCCCACCGAATGTCTGAATTATGACTTACCTCTCCTGC  950

seq1  CTTCCTCCACTTCACCCTAAGCAGTCAAGGAGTTTCTAACTATGCTGTAT  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTCCTCCACTTCACCCTAAGCAGTC-AGGAGTTTCTAACTATGCTGTAT  999

seq1  ATAATTGCTAAAACACCCAAGCTT-GGGGTCACA-CTCCAGACCTACACT  1048
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  ATAATTGCTAAAACACCCAAGCTTGGGGGTCACACCTCCAGACCTACACT  1049

seq1  GTGAGGAGGTTTGTGATCTGAGTCAAGACTCGAAATAAAGGACTTTTATG  1098
      |||||||||||||||||||||||||  ||||| |||||| ||||||| ||
seq2  GTGAGGAGGTTTGTGATCTGAGTCAGAACTCG-AATAAA-GACTTTT-TG  1096

seq1  CAAGTTGCAGTGGACTTCAAAGTTCTTGAGCTTTCCTGGGCTTCCTACAG  1148
      ||||||||||||||||||||   ||||||||||| |||||||| ||| ||
seq2  CAAGTTGCAGTGGACTTCAA--GTCTTGAGCTTT-CTGGGCTT-CTA-AG  1141

seq1  AGTTGGAGCATAGC  1162
      || |||||||||||
seq2  AGGTGGAGCATAGC  1155

seq1: chr16_16381860_16382968
seq2: B6Ng01-166M04.g_68_1170 (reverse)

seq1  GTAGTAAACATGACTAAACAAAGCCATTTGTTTGATGATAATATTTATAT  50
      ||||||| ||||||||||||||||||||   ||||||||||||||||  |
seq2  GTAGTAACCATGACTAAACAAAGCCATT--GTTGATGATAATATTTAATT  48

seq1  TCACT-GTGTTATTATTCCCTATGAGTGATTCCTTTGAAATCATAGCCTC  99
      ||||| ||||||||||||||||||||||||  |||||||||||||  |||
seq2  TCACTGGTGTTATTATTCCCTATGAGTGAT--CTTTGAAATCATAAGCTC  96

seq1  TGAGAGAACACGATGTTGCTAATACCAATGACACAGAGCTTAAGTGCAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAACACGATGTTGCTAATACCAATGACACAGAGCTTAAGTGCAGA  146

seq1  GGTTCACAAGGATCTCACTCCAAAAGCCTGAAATCATAAGACCTTTAAAA  199
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -GTTCACAAGGATCTCACTCCAAAAG-CTGAAATCATAAGACCTTTAAAA  194

seq1  CCAGGTAAAAATAGATTGGGAAGGTTTTTGTGAGATCATAAACTCTCCTT  249
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCAGGTAAAAATAGATTGGGAAGGTTTTTGTGAGATCATAAACTCT-CTT  243

seq1  AAAATTGGAACACCTGAAAAAAAAAAAAAAAAAAGGAACACTCTTGCCAG  299
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  AAAATTGGAACACTGAAAAAAAAAAAAAAAAAAAGGAACACTCTTGCCAG  293

seq1  TTGTGGTGGTACCTGTCTTTAGTCCCACCCAGTATTTGGGAAGCAGAGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGGTACCTGTCTTTAGTCCCACCCAGTATTTGGGAAGCAGAGGC  343

seq1  AAGTGGATCTCTCTGAACTTGAAGCTAGCCTTGTCTACATGATGAGTTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATCTCTCTGAACTTGAAGCTAGCCTTGTCTACATGATGAGTTCC  393

seq1  AGGCCAGGCAAAGCTATAGAGAGGCCAAGACCCCTGTCACAAAGATACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGGCAAAGCTATAGAGAGGCCAAGACCCCTGTCACAAAGATACAA  443

seq1  AGTTAAAGGCGGCACTATGTGCTCTGCGTTAATAGTGTGGACTGGAGAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGGCGGCACTATGTGCTCTGCGTTAATAGTGTGGACTGGAGAGC  493

seq1  ATTATTCACTTCATTTGCCCCAGGTCATACCACTGTTCAGTTCCACCAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCACTTCATTTGCCCCAGGTCATACCACTGTTCAGTTCCACCAGG  543

seq1  CATAAATTTTGTACTTTTCAGTCTTCTTTTACTTCAGACCTTGAGTAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTTTGTACTTTTCAGTCTTCTTTTACTTCAGACCTTGAGTAATT  593

seq1  GGCAGATGGAGGTAACATTTGCATGTGCCTTCTCTCCTCTAGTCCAAAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGGAGGTAACATTTGCATGTGCCTTCTCTCCTCTAGTCCAAAGG  643

seq1  AGAAGCTATGAACCCAAGAGCTCCTCACCCCAGCTCTGGACCTAAAGGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTATGAACCCAAGAGCTCCTCACCCCAGCTCTGGACCTAAAGGGG  693

seq1  ATTGAGTCAGCCATGGCTGGTCCTTGCATGCCCTCCTGATTTTCTGGCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTCAGCCATGGCTGGTCCTTGCATGCCCTCCTGATTTTCTGGCAC  743

seq1  GTACCAGGTACAGGCTTCACACGTTTGAAAACAGCCTTCTCTGGCAGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGGTACAGGCTTCACACGTTTGAAAACAGCCTTCTCTGGCAGTGT  793

seq1  ACTTTGTTTTCTCACCATCACTACGTCTGTTTCTATAGCACAGCCTGTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTTTCTCACCATCACTACGTCTGTTTCTATAGCACAGCCTGTGC  843

seq1  TGACTCAGCTGCCTGCCCTTACTGCATCTCCTGAGTACTAGCCAGACTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGCTGCCTGCCCTTACTGCATCTCCTGAGTACTAGCCAGACTCT  893

seq1  CCTGCATCCTGAATGGTGATTTCATTGTGACTGGCTTACTATGTATCCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATCCTGAATGGTGATTTCATTGTGACTGGCTTACTATGTATCCTG  943

seq1  GGACTGGCAGAAGTCAGGGAATAATCCTTAGTTTCTTCTAAAATATTATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGCAGAAGTCAGGGAATAATCCTTAGTTTCTTCTAAAATATTATT  993

seq1  CAGACTTATATAACTACCAGGGTTCTGGGCTTACCAGCCAATTCTCTGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTATATAACTACCAGGGTTCTGGGCTTACCAGCCAATTCTCTGGA  1043

seq1  TCCAAATATGCCTCAACCAATGCAGGGCTTCTAGTATCTGGAATTCAGCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATATGCCTCAACCAATGCAGGGCTTCTAGTATCTGGAATTCAGCC  1093

seq1  TGAGGAATTC  1109
      ||||||||||
seq2  TGAGGAATTC  1103