BAC Information

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BAC

Clone NameB6Ng01-166N11
Chromosome16 (Build37)
Map Location 64,290,978 - 64,292,135
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540
Downstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166N11.bB6Ng01-166N11.g
ACCDH958502DH958503
length1,2311,149
definitionDH958502|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N11, 5' end.DH958503|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctattagcattttcatggagattatattgcatctatagattgctt
ttggtagaatggctgttttcactgtattaattctacaaattcacaagtag
ggaagattttcccaacttcagatattttcttcaatgtcttaaagacttta
ttttacaagtctttagcttgagtggtcggagttattccacaatgtttttt
ggaagctattgggaaaagtactctttccacgacttcttttttttaatctt
tgtcatttatatagagaaggaggctactgacctacgtatttattttgttc
cctgctaatttgttaaaagtgtccatcaactgtagacatttcctggtgta
ccctttagggtcttaggctgaaaaccataaaatctgcaaatttgattctt
cacttcctatttacttcctatgatctccttcagttgtataagttctagct
aggcactatggtaggaacatgtatggagagagttaatatccttgtctaat
tcctggttttagtgggaatgctttgcgttttcctcatttaggataatgct
ctctctaggtttgctgtagacttgcctttcttgtgttgagatatgtacct
tatatccctgttttctccagaacttttataatgaagaagtgttgagttat
gtcgaaggccttttctgaatataatgcaatgatcatgttgtctataaaat
tatacaggtactgattacttttaaaataaaaagttaatagatatagaact
ttgactcaaatcatttatggtcagtattttatgtcaacaaattgatgtca
atagtaaagataaacaccaagtgacagagttgctgctttctatacaaaca
cttcttcgatttgtttatatgtaaatacagaaagagaatgataacactcc
agtcacattgtaatgcatattatagatgaattttacttcagcaacatggc
ttctttggcaagggatcatatccacgatctagtctgtgtaaattgaatat
aatgcaaacatgcacaacacctttaatccttctgcttaaataaaaaacaa
cctttagtacccaccttttaagtaaaattagtttgtagaaagaagcagtc
atgtttgaaatttccatctagtgaaggacagctaatggacaatcgaaaaa
gacttgacagaatgagtcggatatgtaattgcctaactgtccatgattca
gaagagaccggggaggggaatagtgaccagt
gaattcattcacatctaccttttttctttctgatttccttcctgtcgttg
gggataaaataccacccaaaaataacttgggttggtaaggatttccttgg
cttagacttctatgtcataatccatcactaaggaaaatggagcaggaatt
gaaggcaggaatctggagttcagcaaagctgatgaaacactgcttgcagg
cttcctgttggatctctccctggctaacatacagctagcatgcttatgta
gccctgactcacctgcttgacgaatggtgctggttgtaaagagctgggtc
cttcgacatcaatgacgaattgtgacaaacccttttagacatgttcacag
accaacctgatctaggtaatttcttttttttttaatttataatattttta
ttagatattttctttatatacatttcaaatgctatcccgaaagttccctt
taccctccccctgccctgctcccctacccacccactcccacttcttggcc
ctggcattcccctgtactggggcatataaaatttgctagaccaaggggcc
tctcttcccaatgatggccaactaggccatcttctgctacatatgcagct
agagacatgagctctgggggactggttagttcatattgttccacctatag
ggttgcaaaccccttcagctcagttgaggcttctcctcaataatgactct
aggttgtggaatattgccaattaaggataaccaagacactaggattttaa
tttaaaacaaaacaacaacaacaaaaaaaaaaacacgctgtagccattga
tctctttttgtgttcctactattattaagcacttacaatatttttattta
aacaaaacaatgttttcagaagatgagagaagtaactgctaatactagat
acttatttgtataaatatatcatgtctctctctggctatgtatggcttct
acatagacagccagagttcagaagcaagttgtcagaaagattgggagtgc
acatgagtttgtgaatcctatggaagctgtggctctgatcgtactcttct
gctgtggtggactgagtttaaataattacactgtggaagactcagatctg
tcactgttacattgaacattctcctatgctttcggaaactaatgtctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_64290978_64292135
seq2: B6Ng01-166N11.g_69_1217

seq1  GAATTCATTCACATCTACCTTTTTTCTTTCTGATTTCCTTCCTGTCGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACATCTACCTTTTTTCTTTCTGATTTCCTTCCTGTCGTTG  50

seq1  GGGATAAAATACCACCCAAAAATAACTTGGGTTGGTAAGGATTTCCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAAATACCACCCAAAAATAACTTGGGTTGGTAAGGATTTCCTTGG  100

seq1  CTTAGACTTCTATGTCATAATCCATCACTAAGGAAAATGGAGCAGGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACTTCTATGTCATAATCCATCACTAAGGAAAATGGAGCAGGAATT  150

seq1  GAAGGCAGGAATCTGGAGTTCAGCAAAGCTGATGAAACACTGCTTGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGGAATCTGGAGTTCAGCAAAGCTGATGAAACACTGCTTGCAGG  200

seq1  CTTCCTGTTGGATCTCTCCCTGGCTAACATACAGCTAGCATGCTTATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTTGGATCTCTCCCTGGCTAACATACAGCTAGCATGCTTATGTA  250

seq1  GCCCTGACTCACCTGCTTGACGAATGGTGCTGGTTGTAAAGAGCTGGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGACTCACCTGCTTGACGAATGGTGCTGGTTGTAAAGAGCTGGGTC  300

seq1  CTTCGACATCAATGACGAATTGTGACAAACCCTTTTAGACATGTTCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGACATCAATGACGAATTGTGACAAACCCTTTTAGACATGTTCACAG  350

seq1  ACCAACCTGATCTAGGTAATTTCTTTTTTTTTTAATTTATAATATTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCTGATCTAGGTAATTTCTTTTTTTTTTAATTTATAATATTTTTA  400

seq1  TTAGATATTTTCTTTATATACATTTCAAATGCTATCCCGAAAGTTCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATATTTTCTTTATATACATTTCAAATGCTATCCCGAAAGTTCCCTT  450

seq1  TACCCTCCCCCTGCCCTGCTCCCCTACCCACCCACTCCCACTTCTTGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCCCCCTGCCCTGCTCCCCTACCCACCCACTCCCACTTCTTGGCC  500

seq1  CTGGCATTCCCCTGTACTGGGGCATATAAAATTTGCTAGACCAAGGGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATTCCCCTGTACTGGGGCATATAAAATTTGCTAGACCAAGGGGCC  550

seq1  TCTCTTCCCAATGATGGCCAACTAGGCCATCTTCTGCTACATATGCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCCAATGATGGCCAACTAGGCCATCTTCTGCTACATATGCAGCT  600

seq1  AGAGACATGAGCTCTGGGGGACTGGTTAGTTCATATTGTTCCACCTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATGAGCTCTGGGGGACTGGTTAGTTCATATTGTTCCACCTATAG  650

seq1  GGTTGCAAACCCCTTCAGCTCAGTTGAGGCTTCTCCTCAATAATGACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAAACCCCTTCAGCTCAGTTGAGGCTTCTCCTCAATAATGACTCT  700

seq1  AGGTTGTGGAATATTGCCAATTAAGGATAACCAAGACACTAGGATTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTGGAATATTGCCAATTAAGGATAACCAAGACACTAGGATTTTAA  750

seq1  TTTAAAACAAAACAACAACAACAAAAAAAAAAACACGCTGTAGCCATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACAAAACAACAACAACAAAAAAAAAAACACGCTGTAGCCATTGA  800

seq1  TCTCTTTTTGTGTTCCTACTATTATTAAGCACTTACAATATTTTTATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTCTTTTTGTGTTCCTACTATTATTAAGCACTTACAATATTTTTATTT-  849

seq1  AAACAAAACAATGTTTTCAGAAGATGAGAGAAGTAACTGCTAATACTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAATGTTTTCAGAAGATGAGAGAAGTAACTGCTAATACTAGA  899

seq1  TACTTATTTGTATAAAATATATCATGTCTCTCTCTGGCTATGTATTGGCT  950
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  TACTTATTTGTAT-AAATATATCATGTCTCTCTCTGGCTATGTA-TGGCT  947

seq1  TCTACATAGACAGCCAGAGTTCAGAAGCAAGTTGTCAGAAAGATTGGGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATAGACAGCCAGAGTTCAGAAGCAAGTTGTCAGAAAGATTGGGAG  997

seq1  TGCACATGAGTTTGTGAATCCTATGGAAGCCTGT-GCTCTGATCGTACTC  1049
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  TGCACATGAGTTTGTGAATCCTATGGAAG-CTGTGGCTCTGATCGTACTC  1046

seq1  TTCTGCTGT-GTGGACTGGAAGGTCTAATTAATTACACTGTG--AGACTT  1096
      ||||||||| ||||||||    || ||| |||||||||||||  |||| |
seq2  TTCTGCTGTGGTGGACTG---AGTTTAAATAATTACACTGTGGAAGAC-T  1092

seq1  CAGATCTGTCACTGTAACCAATGTTGAACATTCTCCTATGCTTTCTGAGA  1146
      ||||||||||||||| ||     |||||||||||||||||||||| || |
seq2  CAGATCTGTCACTGTTAC----ATTGAACATTCTCCTATGCTTTCGGAAA  1138

seq1  CTATATGTCTCC  1158
      ||| ||||||||
seq2  CTA-ATGTCTCC  1149