BAC Information

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BAC

Clone NameB6Ng01-168O02
Chromosome16 (Build37)
Map Location 32,749,585 - 32,913,288
singlet/doubletdoublet
Overlap geneMuc4, Muc20, 1700021K19Rik, Fyttd1
Upstream geneDlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302
Downstream geneLrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168O02.bB6Ng01-168O02.g
ACCDH960005DH960006
length1,1611,084
definitionDH960005|Mus musculus domesticus DNA, BAC clone: B6Ng01-168O02, 5' end.DH960006|Mus musculus domesticus DNA, BAC clone: B6Ng01-168O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,749,585 - 32,750,763)(32,912,193 - 32,913,288)
sequence
gaattcagaacctctggaagagcattcggtgctcttaactgctgagctat
ctcttaagattctcataggtcctaggtatttttctttttttgggtccctt
tcctctgggaaggaaaaaaacctgaacactgtattttctacctgtattgc
tgaagatgaatgcaattgaggcaagctggatgcatgatttagatggattc
tttcattctcatgataaaagttactaacagaaaatatttctctggattcc
taaagatgcctttaaactcagtaagacagggctgtgatgtgctgctcacc
ctcctgcacagctttaattggagagcttttgatcacatgatctgtgtgcg
tgctttaataatatagtgttgtagacgtggcagatggctcttggcttccc
agtttaacctgaggaatgtccaggtttcatgggatccatcagatgtaact
agttttcaaaaacatcaataatgcaagcaaaacaccatcgcaagttactg
cactatttatcagtaaattggtgtgtacttgtgtgcagaactcataactg
tggttaagtaagtgaaactacacagaaatcagtatgtagagaagttaaaa
ggattgttagctgaatgaaagaattcagttagaagttaccatttatctaa
acaaattctgcaagataataaagtcgttgtttgttttatttcaagaagat
gctctagcaacaacatcaacacagacacccatgtccctttccagcagcac
cagaacatcccaaatgagctcacaagcatcgacctcatcaacatcttctg
acagaaggacaagtaaaacagaacaaacatcaacaagggatactccaagt
tccataacaacagtttctcagagccatcatactacaagcatggagaccag
caaacctcaaaccaccacaaccaccgaggtgacacatcaactcttcagcc
tctcacgtgaccaaatacagacagagacagttctcaagaacaatctctct
gatggaacaacactccatgctccagtatcagcagctcagctcaagtacaa
acaacatgtaaccacaacatcctccacagaagtacctcagtagaactcaa
ggacaaccaacggcataacactcaagtttacaccctgccaccgcaagtct
actgaaccttc
ggcctgtcagataaagtctcttttctaaagaattagctaattttattttg
gaacccaaggaggccagttacaataagaaaacagcaattgggctgagtag
agtgcacggcaaagcagtccctctagagcaagaacgagtgaggtgggtcg
ggcagtggtggcacacgcctttaattccagcacatgggaggcagaggcag
gtggatttctgagttcgaggacagcctggtctacagagtgagttccagga
cagccagggctacacagagaaaccctgtcttgaaaacaaaaccccacccc
acccccaaaaaaaagaacgagtgaggtttttgaataaaacctgaagttac
aaaataggatgacagagagcaaaattccaagtatgattttgatgcatgtg
agcacattaagacacagatgagaaaaatctatcacagagcacaaaagaaa
atatgaggtgtgagaagctgctcatcactcaaagcccaacttcagggaag
cccccaaaaagcactttcctgagttcaagaaattgtaaaaatgtttcagt
aataaagttgattagtaacagttgctccaagacctgctctatcagccctt
ttgtcttgttttgtttgagataagagtcccaatgttgcccaagctgactt
tgaccttccaacccctgagaacacaaaacaagtaatagttgatgccatgt
ctggctctcagcaatttgacattctagtttcttttgcaacaagtcccaca
ataaattattaatgtctactaatgagccccttcatggtaatgggtagtct
ttgtcaagtaatgtatacccaatatatgtattttctgatctttctgaaca
tttctaattccttgaaagatactaagctagccaggagcatgttgtaatcc
tagtacttgagaggttgaggcaggatgatacagccagcctagattacaag
ggatacctgtctttaaaaatataaaaaaaaaggattaagttgggctggcc
agatggtcatgggggaaaaatcttaccatacaaacctccacaccttagtt
ccattccctgagcccgtgtaatgggggagaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_32749585_32750763
seq2: B6Ng01-168O02.b_47_1207

seq1  GAATTCAGAACCTCTGGAAGAGCATTCGGTGCTCTTAACTGCTGAGCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACCTCTGGAAGAGCATTCGGTGCTCTTAACTGCTGAGCTAT  50

seq1  CTCTTAAGATTCTCATAGGTCCTAGGTATTTTTCTTTTTTTGGGTCCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAGATTCTCATAGGTCCTAGGTATTTTTCTTTTTTTGGGTCCCTT  100

seq1  TCCTCTGGGAAGGAAAAAAACCTGAACACTGTATTTTCTACCTGTATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGGAAGGAAAAAAACCTGAACACTGTATTTTCTACCTGTATTGC  150

seq1  TGAAGATGAATGCAATTGAGGCAAGCTGGATGCATGATTTAGATGGATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGAATGCAATTGAGGCAAGCTGGATGCATGATTTAGATGGATTC  200

seq1  TTTCATTCTCATGATAAAAGTTACTAACAGAAAATATTTCTCTGGATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCTCATGATAAAAGTTACTAACAGAAAATATTTCTCTGGATTCC  250

seq1  TAAAGATGCCTTTAAACTCAGTAAGACAGGGCTGTGATGTGCTGCTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGCCTTTAAACTCAGTAAGACAGGGCTGTGATGTGCTGCTCACC  300

seq1  CTCCTGCACAGCTTTAATTGGAGAGCTTTTGATCACATGATCTGTGTGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCACAGCTTTAATTGGAGAGCTTTTGATCACATGATCTGTGTGCG  350

seq1  TGCTTTAATAATATAGTGTTGTAGACGTGGCAGATGGCTCTTGGCTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAATAATATAGTGTTGTAGACGTGGCAGATGGCTCTTGGCTTCCC  400

seq1  AGTTTAACCTGAGGAATGTCCAGGTTTCATGGGATCCATCAGATGTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAACCTGAGGAATGTCCAGGTTTCATGGGATCCATCAGATGTAACT  450

seq1  AGTTTTCAAAAACATCAATAATGCAAGCAAAACACCATCGCAAGTTACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCAAAAACATCAATAATGCAAGCAAAACACCATCGCAAGTTACTG  500

seq1  CACTATTTATCAGTAAATTGGTGTGTACTTGTGTGCAGAACTCATAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTTATCAGTAAATTGGTGTGTACTTGTGTGCAGAACTCATAACTG  550

seq1  TGGTTAAGTAAGTGAAACTACACAGAAATCAGTATGTAGAGAAGTTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAGTAAGTGAAACTACACAGAAATCAGTATGTAGAGAAGTTAAAA  600

seq1  GGATTGTTAGCTGAATGAAAGAATTCAGTTAGAAGTTACCATTTATCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTTAGCTGAATGAAAGAATTCAGTTAGAAGTTACCATTTATCTAA  650

seq1  ACAAATTCTGCAAGATAATAAAGTCGTTGTTTGTTTTATTTCAAGAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCTGCAAGATAATAAAGTCGTTGTTTGTTTTATTTCAAGAAGAT  700

seq1  GCTCTAGCAACAACATCAACACAGACACCCATGTCCCTTTCCAGCAGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGCAACAACATCAACACAGACACCCATGTCCCTTTCCAGCAGCAC  750

seq1  CAGAACATCCCAAATGAGCTCACAAGCATCGACCTCATCAACATCTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATCCCAAATGAGCTCACAAGCATCGACCTCATCAACATCTTCTG  800

seq1  ACAGAAGGACAAGTAAAACAGAACAAACATCAACAAGGGATACTCCAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGACAAGTAAAACAGAACAAACATCAACAAGGGATACTCCAAGT  850

seq1  TCCATAACAACAGTTTCTCAGAGCCATCATACTACAAGCATGGAGACCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAACAACAGTTTCTCAGAGCCATCATACTACAAGCATGGAGACCAG  900

seq1  CAAACCTCAAACCACCACAACCACCGAGGTGACCACATCAACTCCTTCAG  950
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  CAAACCTCAAACCACCACAACCACCGAGGTGA-CACATCAACT-CTTCAG  948

seq1  CCTCCTCACGTGACCAAATACAGACAGAGACAAGTTCTCAAAGAACAATC  1000
      ||| ||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  CCT-CTCACGTGACCAAATACAGACAGAGAC-AGTTCTC-AAGAACAATC  995

seq1  TCTCCTGATGGAACAACCACCTCACATGCTCCCAGTATCAGCAGCTCAGC  1050
      ||| |||||||||||||   ||| |||||| |||||||||||||||||||
seq2  TCT-CTGATGGAACAAC--ACTC-CATGCT-CCAGTATCAGCAGCTCAGC  1040

seq1  TCCAAGTACAACACACATGTTAACCACAACATCCTCCACAGAAAGTACCT  1100
      | |||||||||   ||||| ||||||||||||||||||||| ||||||||
seq2  T-CAAGTACAAACAACATG-TAACCACAACATCCTCCACAG-AAGTACCT  1087

seq1  CAGTAG-ACTC-AGGACACACAACAGCAATAACAACTCAAGGTTTAACAC  1148
      |||||| |||| ||||||  |||| || ||||| |||||| |||||   |
seq2  CAGTAGAACTCAAGGACAACCAACGGC-ATAAC-ACTCAA-GTTTACACC  1134

seq1  CTGCCACCGCACAAGTCTCACTGACACCTTC  1179
      |||||||||  ||||||| ||||| ||||||
seq2  CTGCCACCG--CAAGTCT-ACTGA-ACCTTC  1161

seq1: chr16_32912193_32913288
seq2: B6Ng01-168O02.g_77_1160 (reverse)

seq1  CAGTTCTCCCCATTTACCACGGGCTCAGTGGATTGAACTTAGGTTGTTGA  50
      |||||||||||  ||| ||||||||||| | || ||||| ||| ||| ||
seq2  CAGTTCTCCCCCATTA-CACGGGCTCAGGGAATGGAACTAAGG-TGTGGA  48

seq1  -GTTTGTATGGTAAGATTTTTCCCCCATGACCATCTTGCCAGCCCAACTT  99
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGTTTGTATGGTAAGATTTTTCCCCCATGACCATCTGGCCAGCCCAACTT  98

seq1  AATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGACAGGTATCCCTTT  149
      ||||           ||||||||| | |||||||||||||||||||||| 
seq2  AATC----------CTTTTTTTTTATATTTTTAAAGACAGGTATCCCTTG  138

seq1  GTATCTAGGCTGGCCTGTATCATCCTGCCTCAACCTCTCAAGTACTAGGA  199
        ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAATCTAGGCTGG-CTGTATCATCCTGCCTCAACCTCTCAAGTACTAGGA  187

seq1  TTACAACATGCTCCTGGCTAGCTTAGTATCTTTCAAAGAATTAGAAATGT  249
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTACAACATGCTCCTGGCTAGCTTAGTATCTTTCAAGGAATTAGAAATGT  237

seq1  TCAGAAAGATCAGAAAATACATATATTGGGTATACATTACTTGACAAAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGATCAGAAAATACATATATTGGGTATACATTACTTGACAAAGA  287

seq1  CTACCCATTACCATGAAGGGGCTCATTAGTAGACATTAATAATTTATTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCATTACCATGAAGGGGCTCATTAGTAGACATTAATAATTTATTGT  337

seq1  GGGACTTGTTGCAAAAGAAACTAGAATGTCAAATTGCTGAGAGCCAGACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTGTTGCAAAAGAAACTAGAATGTCAAATTGCTGAGAGCCAGACA  387

seq1  TGGCATCAACTATTACTTGTTTTGTGTTCTCAGGGGTTGGAAGGTCAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCAACTATTACTTGTTTTGTGTTCTCAGGGGTTGGAAGGTCAAAG  437

seq1  TCAGCTTGGGCAACATTGGGACTCTTATCTCAAACAAAACAAGACAAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTGGGCAACATTGGGACTCTTATCTCAAACAAAACAAGACAAAAG  487

seq1  GGCTGATAGAGCAGGTCTTGGAGCAACTGTTACTAATCAACTTTATTACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATAGAGCAGGTCTTGGAGCAACTGTTACTAATCAACTTTATTACT  537

seq1  GAAACATTTTTACAATTTCTTGAACTCAGGAAAGTGCTTTTTGGGGGCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTTTTACAATTTCTTGAACTCAGGAAAGTGCTTTTTGGGGGCTT  587

seq1  CCCTGAAGTTGGGCTTTGAGTGATGAGCAGCTTCTCACACCTCATATTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGTTGGGCTTTGAGTGATGAGCAGCTTCTCACACCTCATATTTT  637

seq1  CTTTTGTGCTCTGTGATAGATTTTTCTCATCTGTGTCTTAATGTGCTCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGCTCTGTGATAGATTTTTCTCATCTGTGTCTTAATGTGCTCAC  687

seq1  ATGCATCAAAATCATACTTGGAATTTTGCTCTCTGTCATCCTATTTTGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCAAAATCATACTTGGAATTTTGCTCTCTGTCATCCTATTTTGTA  737

seq1  ACTTCAGGTTTTATTCAAAAACCTCACTCGTTCTTTTTTTTGGGGGTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGGTTTTATTCAAAAACCTCACTCGTTCTTTTTTTTGGGGGTGGG  787

seq1  GTGGGGTTTTGTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTTTTGTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCC  837

seq1  TGGAACTCACTCTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCACCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCACTCTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCACCTG  887

seq1  CCTCTGCCTCCCATGTGCTGGAATTAAAGGCGTGTGCCACCACTGCCCGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCCATGTGCTGGAATTAAAGGCGTGTGCCACCACTGCCCGA  937

seq1  CCCACCTCACTCGTTCTTGCTCTAGAGGGACTGCTTTGCCGTGCACTCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCACTCGTTCTTGCTCTAGAGGGACTGCTTTGCCGTGCACTCTA  987

seq1  CTCAGCCCAATTGCTGTTTTCTTATTGTAACTGGCCTCCTTGGGTTCCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCCAATTGCTGTTTTCTTATTGTAACTGGCCTCCTTGGGTTCCAA  1037

seq1  AATAAAATTAGCTAATTCTTTAGAAAAGAGACTTTATCTGACAGGCC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATTAGCTAATTCTTTAGAAAAGAGACTTTATCTGACAGGCC  1084