BAC Information

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BAC

Clone NameB6Ng01-169G05
Chromosome16 (Build37)
Map Location 43,320,524 - 43,438,066
singlet/doubletdoublet
Overlap genenone
Upstream geneGap43, BC002163, LOC667484
Downstream geneZbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169G05.bB6Ng01-169G05.g
ACCDH960379DH960380
length1,1251,113
definitionDH960379|Mus musculus domesticus DNA, BAC clone: B6Ng01-169G05, 5' end.DH960380|Mus musculus domesticus DNA, BAC clone: B6Ng01-169G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,320,524 - 43,321,656)(43,437,192 - 43,438,066)
sequence
gaattctcctgagtcttactgtgtcctgccaagggtgcaaatcattcatt
ttaacactgtacacactactgacctgtggatcacctaatagatgtctgga
ttatcagacaaacttttgaagtatctcagctttttattcaaacaatcctc
attttacataattatagccacaatgagtaaaattaatgatactaacaatt
tgaatatactataaataacttgcagtttccttaagttaaagggaaatgct
tatcatagttatgtgtgtacatgaaaaaataaaacagtacattatccaga
gctaagtacattcagaggtgccagccaccctgtgtcctctaacccttcct
gtatatgacacagtcaccataaccatcatggagaagagcccatctccctg
ggtttcaattctgattgtacaaattgactgtggtatcataagaaaacttc
taattactatattttcaataaatggaaaaataatagtataacctaattgt
gaagctataaaggctaaacaagttcacacacaggattaccatggtacttg
gcatgtctaagcattaaataaatacatattaaataaacattgcttgcttc
ttttttatgttataggtgatgggaatagtttgaaaaatgtcattcttgga
ttgcatttttaaaatgtaaaaacaaacaaagtagaatttcacaagtctgg
gctattaaaacatttagagcattgtttttgttctttgtctcaagagctat
acttcagttgaacatgatgagaaaggaaaagtctattgtatacgtaggtg
aaagaaattcagaaaaaaagagtatgttgctagcctcttgtgattttcct
tccctttctgcatgtccattgatagttctggtaacttctttgagagatag
taatgtcaagtttttaaagaatattgttctttttacgtttctgaacaaat
aaatctacttcatgtatagaaaggcttagaatactattggcgatgctaga
catagcttgtactgtatgtgcagtctgttttgttaaaggtacagtaatgt
acttagtaactaatatggagaacaccttccctgccatggggaagagtagg
ataaattcatgacagggaactaaag
gaattcagcacaccttctcagaaacattattcatgagtataggaggtgtg
gatgtgacacacaaggatgaggacactgaggcaggggtgcacagattgcc
tacagttgtggggacaaaaagcagaggctgtgggcactgatgtgagaggg
gatgtttgctggagagcaggtatgtgtgaagttccttctagcctacctgc
ttttctcttctcagtgaaggggaaaggcaggaagggcaaggaaggagact
gcaagctggacagagggaaagctgtgaaatactcttgtagagatgcagga
aaagacgctgtgggcagcaacaaaggccacttgcagatatcatgaaattt
aagggagagtggtctatgtgcttgcttttggctctagcagagtcaaggtg
gcatgtgggcttggatcagggtgggtggctggttctgatctctacagtga
aaagcatagagctgtaagagaacaagtgtgtgaggtgtgtggccttcaga
acctcaactacacaaggaagtgaggatatgagagcctctggacaaaatta
ataaattaaggggtcctatgggcttcagaaattgttaatagggctaacag
agagattgggctgtgaagatgtgaggtagtaattggagagtggatgcctg
taattgagattatgggcagttgtaattattagtaattaaaatgtcaaaat
tacagccgcagcaatgagaatctggagcggggtagagggcagatcacgag
agttcaaggaagctactggattagtgagtagtggctgagtgagtgatgat
gtaaccaggaggcctggtgggaaccctgagcctttctggcctcctcaact
ctccatcacttcccatcttctagtgtctgcaaactttaattttccagagt
catagctataaacacaccccatcctttctttctttaatccatttcttgct
cctcattttgtcccccacttcgcatccatgcatgcctctcttatggtcca
ctgagctgtctcggtgcactcatcgctatgtgaatgatcatttagcatat
tggttggttggatttctcctaccagactaagtccatagggtggaaagcta
taccctcaataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_43320524_43321656
seq2: B6Ng01-169G05.b_46_1170

seq1  GAATTCTCCTGAGTCTTACTGTGTCCTGCCAAGGGTGCAAATCATTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGAGTCTTACTGTGTCCTGCCAAGGGTGCAAATCATTCATT  50

seq1  TTAACACTGTACACACTACTGACCTGTGGATCACCTAATAGATGTCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACTGTACACACTACTGACCTGTGGATCACCTAATAGATGTCTGGA  100

seq1  TTATCAGACAAACTTTTGAAGTATCTCAGCTTTTTATTCAAACAATCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGACAAACTTTTGAAGTATCTCAGCTTTTTATTCAAACAATCCTC  150

seq1  ATTTTACATAATTATAGCCACAATGAGTAAAATTAATGATACTAACAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACATAATTATAGCCACAATGAGTAAAATTAATGATACTAACAATT  200

seq1  TGAATATACTATAAATAACTTGCAGTTTCCTTAAGTTAAAGGGAAATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATACTATAAATAACTTGCAGTTTCCTTAAGTTAAAGGGAAATGCT  250

seq1  TATCATAGTTATGTGTGTACATGAAAAAATAAAACAGTACATTATCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAGTTATGTGTGTACATGAAAAAATAAAACAGTACATTATCCAGA  300

seq1  GCTAAGTACATTCAGAGGTGCCAGCCACCCTGTGTCCTCTAACCCTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTACATTCAGAGGTGCCAGCCACCCTGTGTCCTCTAACCCTTCCT  350

seq1  GTATATGACACAGTCACCATAACCATCATGGAGAAGAGCCCATCTCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGACACAGTCACCATAACCATCATGGAGAAGAGCCCATCTCCCTG  400

seq1  GGTTTCAATTCTGATTGTACAAATTGACTGTGGTATCATAAGAAAACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAATTCTGATTGTACAAATTGACTGTGGTATCATAAGAAAACTTC  450

seq1  TAATTACTATATTTTCAATAAATGGAAAAATAATAGTATAACCTAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACTATATTTTCAATAAATGGAAAAATAATAGTATAACCTAATTGT  500

seq1  GAAGCTATAAAGGCTAAACAAGTTCACACACAGGATTACCATGGTACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTATAAAGGCTAAACAAGTTCACACACAGGATTACCATGGTACTTG  550

seq1  GCATGTCTAAGCATTAAATAAATACATATTAAATAAACATTGCTTGCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCTAAGCATTAAATAAATACATATTAAATAAACATTGCTTGCTTC  600

seq1  TTTTTTATGTTATAGGTGATGGGAATAGTTTGAAAAATGTCATTCTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATGTTATAGGTGATGGGAATAGTTTGAAAAATGTCATTCTTGGA  650

seq1  TTGCATTTTTAAAATGTAAAAACAAACAAAGTAGAATTTCACAAGTCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTTTAAAATGTAAAAACAAACAAAGTAGAATTTCACAAGTCTGG  700

seq1  GCTATTAAAACATTTAGAGCATTGTTTTTGTTCTTTGTCTCAAGAGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTAAAACATTTAGAGCATTGTTTTTGTTCTTTGTCTCAAGAGCTAT  750

seq1  ACTTCAGTTGAACATGATGAGAAAGGAAAAGTCTATTGTATACGTAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTTGAACATGATGAGAAAGGAAAAGTCTATTGTATACGTAGGTG  800

seq1  AAAGAAATTCAGAAAAAAAGAGTATGTTGCTAGCCTCTTGTGATTTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTCAGAAAAAAAGAGTATGTTGCTAGCCTCTTGTGATTTTCCT  850

seq1  TCCCTTTCTGCATGTCCATTGATAGTTCTGGTAACTTCTTTGAGAAGATA  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCCCTTTCTGCATGTCCATTGATAGTTCTGGTAACTTCTTTGAG-AGATA  899

seq1  GTAATGTCAAGTTTTTTAAAGAATATTGTTCTTTTTTACGTTTCTGAACA  950
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  GTAATGTCAAG-TTTTTAAAGAATATTGTTC-TTTTTACGTTTCTGAACA  947

seq1  AATAAATCTACTTCAATGTATAGAAAGGCTTTAGAATACTATTGGCGATG  1000
      |||||||||||||| |||||||||||||| ||||||||||||||||||||
seq2  AATAAATCTACTTC-ATGTATAGAAAGGC-TTAGAATACTATTGGCGATG  995

seq1  CTAAGACATAGCTTGTACTGTAATGTGCAGTCTGTTTTGTTAAAGGTACA  1050
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CT-AGACATAGCTTGTACTGT-ATGTGCAGTCTGTTTTGTTAAAGGTACA  1043

seq1  GTAATGTACTTAGTAACTAAATATGCAG-ACACC-TCCCTGCACAT-GAG  1097
      |||||||||||||||||| |||||| || ||||| ||||||| ||| | |
seq2  GTAATGTACTTAGTAACT-AATATGGAGAACACCTTCCCTGC-CATGGGG  1091

seq1  AAGAGTAGGATAAAATTCAGTGACAGGGAACTAAAG  1133
      ||||||||||| ||||||| ||||||||||||||||
seq2  AAGAGTAGGAT-AAATTCA-TGACAGGGAACTAAAG  1125

seq1: chr16_43437192_43438066
seq2: B6Ng01-169G05.g_332_1179 (reverse)

seq1  CTTATTGAGGGTATATTGTCTTCCATCCCACTAATGGAACTTATAGTCTA  50
      |||||||||||||||  |  ||||| ||     |||| |||  |||||| 
seq2  CTTATTGAGGGTATA--GCTTTCCACCC----TATGG-ACT--TAGTCTG  41

seq1  GTGAAGAGAAAAAAACAAACAAACCAAATATGCTAAAATGATCATTTCAC  100
      ||    || | ||| | ||| |||| |||||||| ||||||||| |||||
seq2  GT----AGGAGAAATCCAACCAACC-AATATGCT-AAATGATCA-TTCAC  84

seq1  ATAGCGATGAGTGCCACCGAGAACAGCTCAGTGTGACCATAAAGAGAGGC  150
      ||||||||||||| ||||||| ||||||||||| |||||| |||||||||
seq2  ATAGCGATGAGTG-CACCGAG-ACAGCTCAGTG-GACCAT-AAGAGAGGC  130

seq1  ATGCATGGATGGCGGAGTGGGGGACAAAAATGAGGGAGCAAAGAAATGGA  200
      |||||||||| ||| |||||||||| ||||||| ||||| ||||||||||
seq2  ATGCATGGAT-GCGAAGTGGGGGAC-AAAATGA-GGAGC-AAGAAATGGA  176

seq1  TTAAAGAAAAGAAAGGATGGGGTGTGTTTATAGCTATGGACTCTGGAAAA  250
      |||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAAAG-AAAGAAAGGATGGGGTGTGTTTATAGCTAT-GACTCTGGAAAA  224

seq1  TTAAAGTTTGCAGACACTAGAAAGATGGGAAGTGATGGAGAGTTGAGGAG  300
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTAAAGTTTGCAGACACTAG-AAGATGGGAAGTGATGGAGAGTTGAGGAG  273

seq1  GCCAGAAAGGCTCAGGGTTCCCACCAGGCCTCCTGGTTACATCATCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAAGGCTCAGGGTTCCCACCAGGCCTCCTGGTTACATCATCACTC  323

seq1  ACTCAGCCACTACTCACTAATCCAGTAGCTTCCTTGAACTCTCGTGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCCACTACTCACTAATCCAGTAGCTTCCTTGAACTCTCGTGATCT  373

seq1  GCCCTCTACCCCGCTCCAGATTCTCATTGCTGCGGCTGTAATTTTGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTACCCCGCTCCAGATTCTCATTGCTGCGGCTGTAATTTTGACAT  423

seq1  TTTAATTACTAATAATTACAACTGCCCATAATCTCAATTACAGGCATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTACTAATAATTACAACTGCCCATAATCTCAATTACAGGCATCCA  473

seq1  CTCTCCAATTACTACCTCACATCTTCACAGCCCAATCTCTCTGTTAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAATTACTACCTCACATCTTCACAGCCCAATCTCTCTGTTAGCCC  523

seq1  TATTAACAATTTCTGAAGCCCATAGGACCCCTTAATTTATTAATTTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACAATTTCTGAAGCCCATAGGACCCCTTAATTTATTAATTTTGTC  573

seq1  CAGAGGCTCTCATATCCTCACTTCCTTGTGTAGTTGAGGTTCTGAAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCTCTCATATCCTCACTTCCTTGTGTAGTTGAGGTTCTGAAGGCC  623

seq1  ACACACCTCACACACTTGTTCTCTTACAGCTCTATGCTTTTCACTGTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCTCACACACTTGTTCTCTTACAGCTCTATGCTTTTCACTGTAGA  673

seq1  GATCAGAACCAGCCACCCACCCTGATCCAAGCCCACATGCCACCTTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAACCAGCCACCCACCCTGATCCAAGCCCACATGCCACCTTGACT  723

seq1  CTGCTAGAGCCAAAAGCAAGCACATAGACCACTCTCCCTTAAATTTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGAGCCAAAAGCAAGCACATAGACCACTCTCCCTTAAATTTCATG  773

seq1  ATATCTGCAAGTGGCCTTTGTTGCTGCCCACAGCGTCTTTTCCTGCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGCAAGTGGCCTTTGTTGCTGCCCACAGCGTCTTTTCCTGCATCT  823

seq1  CTACAAGAGTATTTCACAGCTTTCC  875
      |||||||||||||||||||||||||
seq2  CTACAAGAGTATTTCACAGCTTTCC  848