BAC Information

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BAC

Clone NameB6Ng01-169J21
Chromosome16 (Build37)
Map Location 84,813,336 - 84,931,818
singlet/doubletdoublet
Overlap geneJam2, Atp5j, LOC100039950, Gabpa, Gm311
Upstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39
Downstream geneApp, Cyyr1, LOC100039994, LOC622000, Adamts1, Adamts5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169J21.bB6Ng01-169J21.g
ACCDH960546DH960547
length1,0961,081
definitionDH960546|Mus musculus domesticus DNA, BAC clone: B6Ng01-169J21, 5' end.DH960547|Mus musculus domesticus DNA, BAC clone: B6Ng01-169J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,813,336 - 84,814,430)(84,930,727 - 84,931,818)
sequence
gaattctggtaaggtcgtttcaggcattaaacttctgtctgtcatcgtga
gaaaaaaggttattagatccttaaattatacataataggtcaagctcatt
gcttactaagtggaggggggtggtagcggtggtagcaggcaagaggatgg
tacatgtgctaagacatgatggaacagactacttactgtgggaagtggga
agatggggtcggaaaaccagggagccaagcagacagggcatgaccagcaa
ctcagggcaggtcaactctttttcatgatggatcaggaagcactctatag
ctacctccctctatgtcctggaaaatcaaccaacctcaatctcaatgtta
accacacaggaaatgcaccaaaaactcagtgggagatgcctgagcctcag
ggctaactgtgtggaaacagtgaccataggaaaaccacgttagggtgtct
tcgccattaaactttctgctggcgccagatccttcagtgtagtctctgcg
acttacctctctgttgttacctcatctgtaaatttagcccagattatcca
attgttccctttcctagagaaaccgatacagcagctccttaaataagctg
ttcgagcttcatgactatttttacttttccatctgtgattttttttttca
gagtagaggaaggatcatttcatttgaaaccttttgctaacaattgcgat
aatattgcgttgggctttaaatatttttgttcccagcaatgcaaaatcac
gaccacaagtgttatggaaaaaaaaaaaaaaacccttataggtaaggtaa
tactaacgagttttaggaatttggaaacagaggttggtcattttccattt
attctttctcctggtgcagtatcagcagaagtcacattcctccggtcctc
aagaaagcacgctgcctctgtagctaagtgaaaaaggagtggcgggcact
tgccctcagaatcagtcatgtgctagcgttcgcagtcttcaggagcagtc
agcaagtcgagccattttacactggtgaattgggcactaactggccttcg
ccaccctgctaaattatcccttcagattatttttttctggagtggg
gaattctaaattctgcagccagaaaattgtgtggaagagaaacaggaaag
gaaagagagagggagagagagagagagcaagctgggtgggtaataggaga
cagatgttttctttttctttttctttcttgcttcttttcttttaaaggac
aatagctacatcgaaaagaaccctcaattaaagtccaaggcagttcacca
gattatgatgcaaactgctctgagaccaacattctcattatatctgcatc
ttgctaacgtaattttaatgcgagccccatgctgcctgaccagctcattt
cttattgtttatgcaaatgggttttgtgggtagtggattagttgcatttt
aaagcccagaggcaaaatgatgaaaatattcatatgacagtaatggatga
aaagcaccctgctgttagcagtttccaacataaaatggcaggactgattt
ttttttttttaatgtctactgcttttgctggtttaaacatttccacagtc
ccagtcttcaattatacaatggcttttgccaaaaacacccagtgcttctt
gtgagatatttttccctatactgtctgtcttcctagaaccccccccctta
cagcacaaataagtctgacaaacatataagtatttaatttttatagataa
ctgtggatttgtgttttaaaatgaacatcatggcattaataaaagtaatt
cttggctaagttaaagatgagacatttgagaataggggtgaagaatctgg
acctgtagaccagccaagacttgaaggacattcactgtgggctagaaaca
ctagatattacccacagccaggatcatatttcctatcactgaaataaagg
gaaattggcagttatgaatggcctggttagttagattttgtcttcgccac
ttgaaaaatgttcacatccttatcatcagggaaatgcaaatcaaaacacc
ctgagattccacctcacaccagtcaggatggctagatcaaaattcagtga
cagccgatgctggcgaggatgtggagaagagaacactcctcattgtgggg
ggagtgcagcctgtacaaccacctctggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_84813336_84814430
seq2: B6Ng01-169J21.b_43_1138

seq1  GAATTCTGGTAAGGTCGTTTCAGGCATTAAACTTCTGTCTGTCATCGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTAAGGTCGTTTCAGGCATTAAACTTCTGTCTGTCATCGTGA  50

seq1  GAAAAAAGGTTATTAGATCCTTAAATTATACATAATAGGTCAAGCTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGGTTATTAGATCCTTAAATTATACATAATAGGTCAAGCTCATT  100

seq1  GCTTACTAAGTGGAGGGGGGTGGTAGCGGTGGTAGCAGGCAAGAGGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTAAGTGGAGGGGGGTGGTAGCGGTGGTAGCAGGCAAGAGGATGG  150

seq1  TACATGTGCTAAGACATGATGGAACAGACTACTTACTGTGGGAAGTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGCTAAGACATGATGGAACAGACTACTTACTGTGGGAAGTGGGA  200

seq1  AGATGGGGTCGGAAAACCAGGGAGCCAAGCAGACAGGGCATGACCAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGGTCGGAAAACCAGGGAGCCAAGCAGACAGGGCATGACCAGCAA  250

seq1  CTCAGGGCAGGTCAACTCTTTTTCATGATGGATCAGGAAGCACTCTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGCAGGTCAACTCTTTTTCATGATGGATCAGGAAGCACTCTATAG  300

seq1  CTACCTCCCTCTATGTCCTGGAAAATCAACCAACCTCAATCTCAATGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCCCTCTATGTCCTGGAAAATCAACCAACCTCAATCTCAATGTTA  350

seq1  ACCACACAGGAAATGCACCAAAAACTCAGTGGGAGATGCCTGAGCCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACAGGAAATGCACCAAAAACTCAGTGGGAGATGCCTGAGCCTCAG  400

seq1  GGCTAACTGTGTGGAAACAGTGACCATAGGAAAACCACGTTAGGGTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACTGTGTGGAAACAGTGACCATAGGAAAACCACGTTAGGGTGTCT  450

seq1  TCGCCATTAAACTTTCTGCTGGCGCCAGATCCTTCAGTGTAGTCTCTGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCATTAAACTTTCTGCTGGCGCCAGATCCTTCAGTGTAGTCTCTGCG  500

seq1  ACTTACCTCTCTGTTGTTACCTCATCTGTAAATTTAGCCCAGATTATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCTCTCTGTTGTTACCTCATCTGTAAATTTAGCCCAGATTATCCA  550

seq1  ATTGTTCCCTTTCCTAGAGAAACCGATACAGCAGCTCCTTAAATAAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCCCTTTCCTAGAGAAACCGATACAGCAGCTCCTTAAATAAGCTG  600

seq1  TTCGAGCTTCATGACTATTTTTACTTTTCCATCTGTGATTTTTTTTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGCTTCATGACTATTTTTACTTTTCCATCTGTGATTTTTTTTTTCA  650

seq1  GAGTAGAGGAAGGATCATTTCATTTGAAACCTTTTGCTAACAATTGCGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGGAAGGATCATTTCATTTGAAACCTTTTGCTAACAATTGCGAT  700

seq1  AATATTGCGTTGGGCTTTAAATATTTTTGTTCCCAGCAATGCAAAATCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGCGTTGGGCTTTAAATATTTTTGTTCCCAGCAATGCAAAATCAC  750

seq1  GACCACAAGTGTTATGG-AAAAAAAAAAAAAACCCTTATAGGTAAGGTAA  799
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GACCACAAGTGTTATGGAAAAAAAAAAAAAAACCCTTATAGGTAAGGTAA  800

seq1  TACTAACGAGTCTTAGGAATTTGGAAACAGAGGTTGGTCA-TTTCCATTT  848
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  TACTAACGAGTTTTAGGAATTTGGAAACAGAGGTTGGTCATTTTCCATTT  850

seq1  ATTCTTTCTCCTGGTGCAGTATCAGCAGAAGTCACA-TCCTCCGGTCCTC  897
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTCTTTCTCCTGGTGCAGTATCAGCAGAAGTCACATTCCTCCGGTCCTC  900

seq1  AAGAAAGCACGCTGCCTCTGTAGCTAAGTGAAAGAAGGAGTGGCGGGCAC  947
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGAAAGCACGCTGCCTCTGTAGCTAAGTGAAA-AAGGAGTGGCGGGCAC  949

seq1  -TGCCCTCAGAATCAGGTCATGTGCTAGCGTTCGCAGTCTTCAGGAGCAG  996
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGCCCTCAGAATCA-GTCATGTGCTAGCGTTCGCAGTCTTCAGGAGCAG  998

seq1  TCAGCAGGTCCGAGCCATTTTACACTGTGAAATTGGGCACTAAACCTGCC  1046
      |||||| || |||||||||||||||||   ||||||||||| |||  |||
seq2  TCAGCAAGT-CGAGCCATTTTACACTGGTGAATTGGGCACT-AACTGGCC  1046

seq1  TTCG-CACACTGCTATATTTACTCTTCAGATTTATTTTTTTCT-GAGTGG  1094
      |||| ||| |||||| |||  | ||||||| |||||||||||| ||||||
seq2  TTCGCCACCCTGCTAAATTATCCCTTCAGA-TTATTTTTTTCTGGAGTGG  1095

seq1  G  1095
      |
seq2  G  1096

seq1: chr16_84930727_84931818
seq2: B6Ng01-169J21.g_67_1147 (reverse)

seq1  TTTCCAGA-GTGGTTGTACAAGCCTGCACTCCCACCAACAATGGAGGAGT  49
      |||||||| |||||||||| || |||||||||| || ||||| |||||||
seq2  TTTCCAGAGGTGGTTGTAC-AGGCTGCACTCCC-CCCACAAT-GAGGAGT  47

seq1  GTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTT  99
      ||| ||| ||||||||||||||||||||||| ||||||| ||||| ||||
seq2  GTT-CTC-TTCTCCACATCCTCGCCAGCATCGGCTGTCA-CTGAA-TTTT  93

seq1  GATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGA  149
      |||| ||||||| |||||||||||||||||||||||||||| ||||||||
seq2  GATC-TAGCCATCCTGACTGGTGTGAGGTGGAATCTCAGGG-TGTTTTGA  141

seq1  TTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAAGTGGCGA  199
      |||||||||||||||||| |||||||| |||||| |||||||||||||||
seq2  TTTGCATTTCCCTGATGA-TAAGGATG-TGAACA-TTTTTCAAGTGGCGA  188

seq1  AGACAAAATCTAACTAACCAGGCCATTCATAACTGCCAATTTCCCTTTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAATCTAACTAACCAGGCCATTCATAACTGCCAATTTCCCTTTAT  238

seq1  TTCAGTGATAGGAAATATGATCCTGGCTGTGGGTAATATCTAGTGTTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGATAGGAAATATGATCCTGGCTGTGGGTAATATCTAGTGTTTCT  288

seq1  AGCCCACAGTGAATGTCCTTCAAGTCTTGGCTGGTCTACAGGTCCAGATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACAGTGAATGTCCTTCAAGTCTTGGCTGGTCTACAGGTCCAGATT  338

seq1  CTTCACCCCTATTCTCAAATGTCTCATCTTTAACTTAGCCAAGAATTACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCCCTATTCTCAAATGTCTCATCTTTAACTTAGCCAAGAATTACT  388

seq1  TTTATTAATGCCATGATGTTCATTTTAAAACACAAATCCACAGTTATCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAATGCCATGATGTTCATTTTAAAACACAAATCCACAGTTATCTA  438

seq1  TAAAAATTAAATACTTATATGTTTGTCAGACTTATTTGTGCTGTAAGGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTAAATACTTATATGTTTGTCAGACTTATTTGTGCTGTAAGGGG  488

seq1  GGGGGTTCTAGGAAGACAGACAGTATAGGGAAAAATATCTCACAAGAAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTCTAGGAAGACAGACAGTATAGGGAAAAATATCTCACAAGAAGC  538

seq1  ACTGGGTGTTTTTGGCAAAAGCCATTGTATAATTGAAGACTGGGACTGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTGTTTTTGGCAAAAGCCATTGTATAATTGAAGACTGGGACTGTG  588

seq1  GAAATGTTTAAACCAGCAAAAGCAGTAGACATTAAAAAAAAAAAAATCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTTAAACCAGCAAAAGCAGTAGACATTAAAAAAAAAAAAATCAG  638

seq1  TCCTGCCATTTTATGTTGGAAACTGCTAACAGCAGGGTGCTTTTCATCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCATTTTATGTTGGAAACTGCTAACAGCAGGGTGCTTTTCATCCA  688

seq1  TTACTGTCATATGAATATTTTCATCATTTTGCCTCTGGGCTTTAAAATGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCATATGAATATTTTCATCATTTTGCCTCTGGGCTTTAAAATGC  738

seq1  AACTAATCCACTACCCACAAAACCCATTTGCATAAACAATAAGAAATGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATCCACTACCCACAAAACCCATTTGCATAAACAATAAGAAATGAG  788

seq1  CTGGTCAGGCAGCATGGGGCTCGCATTAAAATTACGTTAGCAAGATGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAGGCAGCATGGGGCTCGCATTAAAATTACGTTAGCAAGATGCAG  838

seq1  ATATAATGAGAATGTTGGTCTCAGAGCAGTTTGCATCATAATCTGGTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATGAGAATGTTGGTCTCAGAGCAGTTTGCATCATAATCTGGTGAA  888

seq1  CTGCCTTGGACTTTAATTGAGGGTTCTTTTCGATGTAGCTATTGTCCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGGACTTTAATTGAGGGTTCTTTTCGATGTAGCTATTGTCCTTT  938

seq1  AAAAGAAAAGAAGCAAGAAAGAAAAAGAAAAAGAAAACATCTGTCTCCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGAAGCAAGAAAGAAAAAGAAAAAGAAAACATCTGTCTCCTA  988

seq1  TTACCCACCCAGCTTGCTCTCTCTCTCTCTCCCTCTCTCTTTCCTTTCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCACCCAGCTTGCTCTCTCTCTCTCTCCCTCTCTCTTTCCTTTCCT  1038

seq1  GTTTCTCTTCCACACAATTTTCTGGCTGCAGAATTTAGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTTCCACACAATTTTCTGGCTGCAGAATTTAGAATTC  1081