BAC Information

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BAC

Clone NameB6Ng01-169M03
Chromosome16 (Build37)
Map Location 51,578,341 - 51,673,883
singlet/doubletdoublet
Overlap genenone
Upstream geneCcdc54, LOC672778, 5330426P16Rik, EG639820, LOC627543
Downstream geneCblb, Alcam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169M03.bB6Ng01-169M03.g
ACCDH960647DH960648
length9041,076
definitionDH960647|Mus musculus domesticus DNA, BAC clone: B6Ng01-169M03, 5' end.DH960648|Mus musculus domesticus DNA, BAC clone: B6Ng01-169M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,578,341 - 51,579,245)(51,672,796 - 51,673,883)
sequence
gaattctaacaagccttctggttataattttcagagttatatggattcat
tatcctgtttcccatacattctgttattacatgtaatatgtaatatacat
atataatacacattatatatattatttatacacactacacacacacacac
acactaacaagaaactctcattaagtgagggtaaggtagagcatagagtg
ctggcctcttctctgcaaaacagtgactacacaaatgatatcacactctg
atttaccttaaatttttcatgtgcatttttccaatgatttattttcaatt
attctttagctatactatgctgtagtatgttaatatgttatacataaagg
ctgcttatgaagatgttttcttcctgattaatatgaataaggtaatcatt
atgagtttcaagaaatatgggttgaaaacatgttgttgtttagtttttat
caaaaattctctacattaaaacaagccataaagtaccaaagtgatttttt
tttatatcatgctactatttttacagtgggtttttaaatgaccaatgttt
gtatgttctgtgtatttttgaatactgatagtaaggtagtcatctgctaa
caaatatatttaaactgtgctctcagccttgtcagtgactcttttaagga
taatgcactggcaccttgaagagttcagagctatcatcataaaattctgg
tctctacaatggaaataagaaatacattatttatttttatcttgggtctg
attgaggacttgaaaggccttccattgtgattctgctttaaacatacata
atgaatagcgaatttgaagatctttgactctagataagggcctgagaggt
agatggggaaaaaatgaggatggtagaaagagaagataggggaaggggtg
agct
gaattcaatccgcagatcatagagtggatcatagagtggagagaactctc
tctctctctctctctccctctctctctctctctctctcatacacacacaa
acacacacacacaaatatttatatatgcacactcacatacacataaaata
aaattatttataaatttataaagtttttaaaatgggttattggaaaacaa
tacaattgtaaatcaaaacgtaagtcccaattttctcttttgacggtcag
atttaacagacaacattatgtcctgccaaactgccataaacatttactct
aaagtcctaagcagcctcctactgatgagacatcaagtgtgtgagccagg
acaatatttgggcctgcattcggcaaagcactgtggcaaagccagcagtc
atttgacagctgctgaggagtgcccaagcaaatgaaccaaccagaaaaaa
aaaaaaaaaagtttgatatttgaggaaatttgttggacaaagaaatagac
ttgaggatcattgttttgcaaagacgagaatagttgaccctctcccttac
ttttccattttagcttttgcttaaaaaatattctgagtgaatgtagttaa
tcctttttttctgtacatttttatttgtaataatatttaagccttgtgaa
tataatccccataggaaatcattcatatttctctgcttgtggtaattatc
ataaggcatctctagttatctcctatggcttgattttaatataaggcagt
aggtagatcttgtagggagcctaccgtagagggtttttagttagttggca
acagcagattgtaactgcagggctgatgctgtcattcattactttgatat
gatgacctacacattctttaaggtcatgggcaaatttaatttctaaatta
tacaaatgtatgaaatcaataaaagaaatggagaggagatcaaataaatt
tattaataaagacttcaattggttcatacatttttccaaacattggcaga
ccctgaactggcaaactgagtatcatttattatttaggacagaatgtcag
tgcagttagtgtacctgtgaagctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_51578341_51579245
seq2: B6Ng01-169M03.b_44_947

seq1  GAATTCTAACAAGCCTTCTGGTTATAATTTTCAGAGTTATATGGATTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACAAGCCTTCTGGTTATAATTTTCAGAGTTATATGGATTCAT  50

seq1  TATCCTGTTTCCCATACATTCTGTTATTACATGTAATATGTAATATACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGTTTCCCATACATTCTGTTATTACATGTAATATGTAATATACAT  100

seq1  ATATAATACACATTATATATATTATTTATACACACTACACACACACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATACACATTATATATATTATTTATACACACTACACACACACACAC  150

seq1  ACACTAACAAGAAACTCTCATTAAGTGAGGGTAAGGTAGAGCATAGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAACAAGAAACTCTCATTAAGTGAGGGTAAGGTAGAGCATAGAGTG  200

seq1  CTGGCCTCTTCTCTGCAAAACAGTGACTACACAAATGATATCACACTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCTTCTCTGCAAAACAGTGACTACACAAATGATATCACACTCTG  250

seq1  ATTTACCTTAAATTTTTCATGTGCATTTTTCCAATGATTTATTTTCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTTAAATTTTTCATGTGCATTTTTCCAATGATTTATTTTCAATT  300

seq1  ATTCTTTAGCTATACTATGCTGTAGTATGTTAATATGTTATACATAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTAGCTATACTATGCTGTAGTATGTTAATATGTTATACATAAAGG  350

seq1  CTGCTTATGAAGATGTTTTCTTCCTGATTAATATGAATAAGGTAATCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTATGAAGATGTTTTCTTCCTGATTAATATGAATAAGGTAATCATT  400

seq1  ATGAGTTTCAAGAAATATGGGTTGAAAACATGTTGTTGTTTAGTTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTCAAGAAATATGGGTTGAAAACATGTTGTTGTTTAGTTTTTAT  450

seq1  CAAAAATTCTCTACATTAAAACAAGCCATAAAGTACCAAAGTGATTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTCTCTACATTAAAACAAGCCATAAAGTACCAAAGTGATTTTTT  500

seq1  TTTATATCATGCTACTATTTTTACAGTGGGTTTTTAAATGACCAATGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCATGCTACTATTTTTACAGTGGGTTTTTAAATGACCAATGTTT  550

seq1  GTATGTTCTGTGTATTTTTGAATACTGATAGTAAGGTAGTCATCTGCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTCTGTGTATTTTTGAATACTGATAGTAAGGTAGTCATCTGCTAA  600

seq1  CAAATATATTTAAACTGTGCTCTCAGCCTTGTCAGTGACTCTTTTAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATATTTAAACTGTGCTCTCAGCCTTGTCAGTGACTCTTTTAAGGA  650

seq1  TAATGCACTGGCACCTTGAAGAGTTCAGAGCTATCATCATAAAATTCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCACTGGCACCTTGAAGAGTTCAGAGCTATCATCATAAAATTCTGG  700

seq1  TCTCTACAATGGAAATAAGAAAATACATTATTTATTTTTATCTTGGGTCT  750
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTCTACAATGGAAATAAG-AAATACATTATTTATTTTTATCTTGGGTCT  749

seq1  GATTGAGGACTTGAAAGGCCTTCCATTGTGATTCTGCTTTAAACATACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGGACTTGAAAGGCCTTCCATTGTGATTCTGCTTTAAACATACAT  799

seq1  AATGAATAGCGAATTTGAAGATCTTTGACTCTAGATAAGGGCCTGAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATAGCGAATTTGAAGATCTTTGACTCTAGATAAGGGCCTGAGAGG  849

seq1  TAGATGGGGAAAAAATGAGGATGGTAGAAAGAGAAGATAGGGGAAGGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGGGAAAAAATGAGGATGGTAGAAAGAGAAGATAGGGGAAGGGGT  899

seq1  GAGCT  905
      |||||
seq2  GAGCT  904

seq1: chr16_51672796_51673883
seq2: B6Ng01-169M03.g_69_1144 (reverse)

seq1  TCAGCTCTCACAGGTACCACTTACTGCACTGACATTTCTGTCCTATAATA  50
      |||||| ||||||||| |||| |||||||||||| |||||||||| ||||
seq2  TCAGCT-TCACAGGTA-CACTAACTGCACTGACA-TTCTGTCCTA-AATA  46

seq1  ATAATTGATACTCAGTTTTGCCAGTTCAGGGTCTGCCTATGTTTTGGAAA  100
      |||| |||||||||| ||||||||||||||||||||| ||| ||||||||
seq2  ATAAATGATACTCAG-TTTGCCAGTTCAGGGTCTGCCAATG-TTTGGAAA  94

seq1  AATGGTATTGAACCAATTTGAAGTCTTTATTAATAAATTTATTTTGATCT  150
      ||| ||| |||||||| |||||||||||||||||||||||| ||||||||
seq2  AAT-GTA-TGAACCAA-TTGAAGTCTTTATTAATAAATTTA-TTTGATCT  140

seq1  CCTCTCCATTTCTTTTTATTGATTTCATACATTTGTATAATTTTAGAAAT  200
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  CCTCTCCATTTC-TTTTATTGATTTCATACATTTGTATAA-TTTAGAAAT  188

seq1  TAAATTTGCCCATGACCTTAAAGAATGTGTAGGTCATCATATCAAAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGCCCATGACCTTAAAGAATGTGTAGGTCATCATATCAAAGTAA  238

seq1  TGAATGACAGCATCAGCCCTGCAGTTACAATCTGCTGTTGGCCAACTAAC  300
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGAATGACAGCATCAGCCCTGCAGTTACAATCTGCTGTT-GCCAACTAAC  287

seq1  T-AAAACCCTCTACGGTAGGCTCCCTACAAGATCTACCTACTGCCTTATA  349
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCCTCTACGGTAGGCTCCCTACAAGATCTACCTACTGCCTTATA  337

seq1  TTAAAATCAAGCCATAGGAGATAACTAGAGATGCCTTATGATAATTACCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCAAGCCATAGGAGATAACTAGAGATGCCTTATGATAATTACCA  387

seq1  CAAGCAGAGAAATATGAATGATTTCCTATGGGGATTATATTCACAAGGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGAGAAATATGAATGATTTCCTATGGGGATTATATTCACAAGGCT  437

seq1  TAAATATTATTACAAATAAAAATGTACAGAAAAAAAGGATTAACTACATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTATTACAAATAAAAATGTACAGAAAAAAAGGATTAACTACATT  487

seq1  CACTCAGAATATTTTTTAAGCAAAAGCTAAAATGGAAAAGTAAGGGAGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGAATATTTTTTAAGCAAAAGCTAAAATGGAAAAGTAAGGGAGAG  537

seq1  GGTCAACTATTCTCGTCTTTGCAAAACAATGATCCTCAAGTCTATTTCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACTATTCTCGTCTTTGCAAAACAATGATCCTCAAGTCTATTTCTT  587

seq1  TGTCCAACAAATTTCCTCAAATATCAAACTTTTTTTTTTTTTTTTCTGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAACAAATTTCCTCAAATATCAAACTTTTTTTTTTTTTTTTCTGGT  637

seq1  TGGTTCATTTGCTTGGGCACTCCTCAGCAGCTGTCAAATGACTGCTGGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATTTGCTTGGGCACTCCTCAGCAGCTGTCAAATGACTGCTGGCT  687

seq1  TTGCCACAGTGCTTTGCCGAATGCAGGCCCAAATATTGTCCTGGCTCACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACAGTGCTTTGCCGAATGCAGGCCCAAATATTGTCCTGGCTCACA  737

seq1  CACTTGATGTCTCATCAGTAGGAGGCTGCTTAGGACTTTAGAGTAAATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGATGTCTCATCAGTAGGAGGCTGCTTAGGACTTTAGAGTAAATGT  787

seq1  TTATGGCAGTTTGGCAGGACATAATGTTGTCTGTTAAATCTGACCGTCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCAGTTTGGCAGGACATAATGTTGTCTGTTAAATCTGACCGTCAA  837

seq1  AAGAGAAAATTGGGACTTACGTTTTGATTTACAATTGTATTGTTTTCCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAATTGGGACTTACGTTTTGATTTACAATTGTATTGTTTTCCAA  887

seq1  TAACCCATTTTAAAAACTTTATAAATTTATAAATAATTTTATTTTATGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCATTTTAAAAACTTTATAAATTTATAAATAATTTTATTTTATGTG  937

seq1  TATGTGAGTGTGCATATATAAATATTTGTGTGTGTGTGTTTGTGTGTGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGTGTGCATATATAAATATTTGTGTGTGTGTGTTTGTGTGTGTA  987

seq1  TGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGTTCTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGTTCTCT  1037

seq1  CCACTCTATGATCCACTCTATGATCTGCGGATTGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTATGATCCACTCTATGATCTGCGGATTGAATTC  1076