BAC Information

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BAC

Clone NameB6Ng01-170L11
Chromosome16 (Build37)
Map Location 91,246,103 - 91,366,151
singlet/doubletdoublet
Overlap geneOlig1
Upstream geneSfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2
Downstream geneIfnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170L11.bB6Ng01-170L11.g
ACCDH961357DH961358
length1,037861
definitionDH961357|Mus musculus domesticus DNA, BAC clone: B6Ng01-170L11, 5' end.DH961358|Mus musculus domesticus DNA, BAC clone: B6Ng01-170L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,246,103 - 91,247,143)(91,365,291 - 91,366,151)
sequence
gaattcaatgttctaaaatgattccacaatttaattttttaattaaaaat
gtccttgtgagtctcactgacattaaaggaggggatccaaggtttagcac
aagaaaagtgacccctgcttaaaacataagcattttgcctccagaatatg
ttggaaaccaccaccatggctggagtatgccatttttttcttcaaatact
gcataaaataccactcccaccccaaagtatataatccactcattaaaagt
ataacaaaattataacaaacaacaccatctaattttttttttctttactg
agacttgactcttgttcccagccctttcaaatggacaaagtccttttctg
aagacgctttgttgttgatgttgttttaaagttgagtgcataagctaact
caattctaatatatttcaaatatattcattattgtccattaaaaacacac
taccatttcgtggttctgtgagagagtgacagagcctggtttgtcacagc
ccagggcataagcaatcattgtgtggcttcattagctattccctgagcta
gtgcgagggacatatgtctattctctgtaacaaatgcgagcagcggcagg
cgcctccgctctatgcagataacgcagcacaagtgtgagcgctcccaagg
acctgcgtccccagcctcaggcacaatcagcccatggtcaccaattggtt
ccagtttattaacagcctataaacttctcatctgttccaggactggttag
gactgtcacctgcaactgcctgcccccagtaggctcctccagttctcaga
atcaggatggatctggctttgctgggttaacatactctattctccaacac
aaagaaccatgtatttcaactgctgtaagtgtccagagtggcaaaacaga
agtgtgtgcttagttctacaccagtaacaacactacgcagtcagagacac
aatagtgagtagaaccagacttggctattttatttttcaatacatagaac
tacacacatcagagggagagagatagagagagagaga
gaattcttgattggcaaatactttatatacagtagcaatctccccagtct
cctccctgaatatttaaacagaaggttggttgagtctgtggattcagaac
ctgtagaggcggactttggggaatctctatgtgatggtttggatatactt
ggcccagggagtggcactatttggaggtctggccttgttggagtaggtgt
gaccttgttggaagaagtgtgtcactgtcagggtgggcaataagaccctt
ctcttaaccacatgagaaccagccttctgtttgccttcagaacaagatgt
agaactctcagctcctccagccccacatctgcctggatgctgccctgctc
ccaccttgatgataatggactgaacttctaaacctgtaagccagatccaa
ttaaatgttgtcctttataagacttgccttggccatggtgtctgttcaca
gcagcaaaccctaactgagacaccctacagaacagcaaggctatatagta
ttagctttggggactcacgggagctgtagtgctaggaaagaaagaaccta
gacatggggtcccaatgctttctctgagtaggcggccagcacgcaggaca
atctccaggacaattttgtttctgtcctgatcctttctatgtcttgagca
gcatggtcaggaagagcgagaattgcgtttgtctgcaaacagtagttttg
ggcacaaagtcttgattaattgattgatcagagagtaagaagaacttccc
actggggatggggatcaataagaagtctggctttgtggagaggggtttaa
gatggtttaagattggttagggtggatctgctgtggaacaacatgggggg
tgggggtgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_91246103_91247143
seq2: B6Ng01-170L11.b_47_1083

seq1  GAATTCAATGTTCTAAAATGATTCCACAATTTAATTTTTTAATTAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTTCTAAAATGATTCCACAATTTAATTTTTTAATTAAAAAT  50

seq1  GTCCTTGTGAGTCTCACTGACATTAAAGGAGGGGATCCAAGGTTTAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGTGAGTCTCACTGACATTAAAGGAGGGGATCCAAGGTTTAGCAC  100

seq1  AAGAAAAGTGACCCCTGCTTAAAACATAAGCATTTTGCCTCCAGAATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGTGACCCCTGCTTAAAACATAAGCATTTTGCCTCCAGAATATG  150

seq1  TTGGAAACCACCACCATGGCTGGAGTATGCCATTTTTTTCTTCAAATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACCACCACCATGGCTGGAGTATGCCATTTTTTTCTTCAAATACT  200

seq1  GCATAAAATACCACTCCCACCCCAAAGTATATAATCCACTCATTAAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAATACCACTCCCACCCCAAAGTATATAATCCACTCATTAAAAGT  250

seq1  ATAACAAAATTATAACAAACAACACCATCTAATTTTTTTTTTCTTTACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAATTATAACAAACAACACCATCTAATTTTTTTTTTCTTTACTG  300

seq1  AGACTTGACTCTTGTTCCCAGCCCTTTCAAATGGACAAAGTCCTTTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGACTCTTGTTCCCAGCCCTTTCAAATGGACAAAGTCCTTTTCTG  350

seq1  AAGACGCTTTGTTGTTGATGTTGTTTTAAAGTTGAGTGCATAAGCTAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGCTTTGTTGTTGATGTTGTTTTAAAGTTGAGTGCATAAGCTAACT  400

seq1  CAATTCTAATATATTTCAAATATATTCATTATTGTCCATTAAAAACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTAATATATTTCAAATATATTCATTATTGTCCATTAAAAACACAC  450

seq1  TACCATTTCGTGGTTCTGTGAGAGAGTGACAGAGCCTGGTTTGTCACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTCGTGGTTCTGTGAGAGAGTGACAGAGCCTGGTTTGTCACAGC  500

seq1  CCAGGGCATAAGCAATCATTGTGTGGCTTCATTAGCTATTCCCTGAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCATAAGCAATCATTGTGTGGCTTCATTAGCTATTCCCTGAGCTA  550

seq1  GTGCGAGGGACATATGTCTATTCTCTGTAACAAATGCGAGCAGCGGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGAGGGACATATGTCTATTCTCTGTAACAAATGCGAGCAGCGGCAGG  600

seq1  CGCCTCCGCTCTATGCAGATAACGCAGCACAAGTGTGAGCGCTCCCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCCGCTCTATGCAGATAACGCAGCACAAGTGTGAGCGCTCCCAAGG  650

seq1  ACCTGCGTCCCCAGCCTCAGGCACAATCAGCCCATGGTCACCAATTGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCGTCCCCAGCCTCAGGCACAATCAGCCCATGGTCACCAATTGGTT  700

seq1  CCAGTTTATTAACAGCCTATAAACTTCTCATCTGTTCCAGGACTGGTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTATTAACAGCCTATAAACTTCTCATCTGTTCCAGGACTGGTTAG  750

seq1  GACTGTCACCTGCAACTGCCTGCCCCCAGTAGGCTCCTCCAGTTCTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCACCTGCAACTGCCTGCCCCCAGTAGGCTCCTCCAGTTCTCAGA  800

seq1  ATCAGGATGGATCTGGCTTTGCTGGGTTAACATACTCTATTCTCCAACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGATGGATCTGGCTTTGCTGGGTTAACATACTCTATTCTCCAACAC  850

seq1  AAAGAACCATGTATTTCAACTGCTGTAAGTGTCCAGAGTGGCAAAACAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCATGTATTTCAACTGCTGTAAGTGTCCAGAGTGGCAAAACAGA  900

seq1  AGTGTGTGCTTAGTTCTACACCAGTAACAACACTACGCAGTCAGAGACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGCTTAGTTCTACACCAGTAACAACACTACGCAGTCAGAGACAC  950

seq1  AATAGTGAGTAGAACCAGACTTGGCTAATTTTATTTATTCAATACATAGA  1000
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  AATAGTGAGTAGAACCAGACTTGGCT-ATTTTATTT-TTCAATACATAGA  998

seq1  CACTACACACACACAGAGGGAGAGAGAGAGAGAGAGAGAGA  1041
       ||||||||||  |||||||||||||| |||||||||||||
seq2  -ACTACACACA-TCAGAGGGAGAGAGATAGAGAGAGAGAGA  1037

seq1: chr16_91365291_91366151
seq2: B6Ng01-170L11.g_66_926 (reverse)

seq1  GCCCA-CCCCACCCCCCATGTTGTTTCCACAGCAGATCCACCCTAGCCAT  49
      ||||| ||||||||||||||||| ||||||||||||||||||||| ||| 
seq2  GCCCACCCCCACCCCCCATGTTG-TTCCACAGCAGATCCACCCTAACCAA  49

seq1  TCTTAAACCATCTTAAACCCCTCTCCACAAAGCCAGACTTCTTATTGATC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAACCATCTTAAACCCCTCTCCACAAAGCCAGACTTCTTATTGATC  99

seq1  CCCATCCCCAGTGGGAAGTTCTTCTTACTCTCTGATCAATCAATTAATCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCCAGTGGGAAGTTCTTCTTACTCTCTGATCAATCAATTAATCA  149

seq1  AGACTTTGTGCCCAAAACTACTGTTTGCAGACAAACGCAATTCTCGCTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTGTGCCCAAAACTACTGTTTGCAGACAAACGCAATTCTCGCTCT  199

seq1  TCCTGACCATGCTGCTCAAGACATAGAAAGGATCAGGACAGAAACAAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACCATGCTGCTCAAGACATAGAAAGGATCAGGACAGAAACAAAAT  249

seq1  TGTCCTGGAGATTGTCCTGCGTGCTGGCCGCCTACTCAGAGAAAGCATTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAGATTGTCCTGCGTGCTGGCCGCCTACTCAGAGAAAGCATTG  299

seq1  GGACCCCATGTCTAGGTTCTTTCTTTCCTAGCACTACAGCTCCCGTGAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCATGTCTAGGTTCTTTCTTTCCTAGCACTACAGCTCCCGTGAGT  349

seq1  CCCCAAAGCTAATACTATATAGCCTTGCTGTTCTGTAGGGTGTCTCAGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGCTAATACTATATAGCCTTGCTGTTCTGTAGGGTGTCTCAGTT  399

seq1  AGGGTTTGCTGCTGTGAACAGACACCATGGCCAAGGCAAGTCTTATAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTGCTGCTGTGAACAGACACCATGGCCAAGGCAAGTCTTATAAAG  449

seq1  GACAACATTTAATTGGATCTGGCTTACAGGTTTAGAAGTTCAGTCCATTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACATTTAATTGGATCTGGCTTACAGGTTTAGAAGTTCAGTCCATTA  499

seq1  TCATCAAGGTGGGAGCAGGGCAGCATCCAGGCAGATGTGGGGCTGGAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGGTGGGAGCAGGGCAGCATCCAGGCAGATGTGGGGCTGGAGGA  549

seq1  GCTGAGAGTTCTACATCTTGTTCTGAAGGCAAACAGAAGGCTGGTTCTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGTTCTACATCTTGTTCTGAAGGCAAACAGAAGGCTGGTTCTCA  599

seq1  TGTGGTTAAGAGAAGGGTCTTATTGCCCACCCTGACAGTGACACACTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTAAGAGAAGGGTCTTATTGCCCACCCTGACAGTGACACACTTCT  649

seq1  TCCAACAAGGTCACACCTACTCCAACAAGGCCAGACCTCCAAATAGTGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAAGGTCACACCTACTCCAACAAGGCCAGACCTCCAAATAGTGCC  699

seq1  ACTCCCTGGGCCAAGTATATCCAAACCATCACATAGAGATTCCCCAAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTGGGCCAAGTATATCCAAACCATCACATAGAGATTCCCCAAAGT  749

seq1  CCGCCTCTACAGGTTCTGAATCCACAGACTCAACCAACCTTCTGTTTAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTCTACAGGTTCTGAATCCACAGACTCAACCAACCTTCTGTTTAAA  799

seq1  TATTCAGGGAGGAGACTGGGGAGATTGCTACTGTATATAAAGTATTTGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGGGAGGAGACTGGGGAGATTGCTACTGTATATAAAGTATTTGCC  849

seq1  AATCAAGAATTC  861
      ||||||||||||
seq2  AATCAAGAATTC  861