BAC Information

Click to search

BAC

Clone NameB6Ng01-171N07
Chromosome16 (Build37)
Map Location 38,773,142 - 38,968,081
singlet/doubletdoublet
Overlap geneUpk1b, 4930435E12Rik, Igsf11
Upstream geneFstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171N07.bB6Ng01-171N07.g
ACCGA000609GA000610
length1,042696
definitionB6Ng01-171N07.b B6Ng01-171N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,773,142 - 38,774,174)(38,967,510 - 38,968,081)
sequence
gaattctagcgaatcattccctgtccatctgggcagtgagtgcaccagcc
agaaggaacctactgctaagtggctcccacttccgccattttaatccctg
ccgttggggctcttctgacttaggcaggacctgttgaaatcaaagaaagg
gagcgtattttatgggctcctttatttatggataggcaaacaaatggtga
cttgtcaggacttccttcaggatcgttaatgtgagcaaactattttgaca
gcaaacaaaagaccctataaatcacttgtttgaatagctggcatggatcc
cgcggtttgggaagtgtttccggttgaaacctctgagggcaaagactgag
ctgatgtaaatcgggcacggccgacacccccaaagtttccatacactcaa
tgcacatcactccacagggcatgagaggaaatctgaaaatcaagggttgt
actggagactaaaagcatccaaaagtgtgaggaacactgcagacagaagt
cacagcagaaccagaggcagaagaaagcatgactgccatttcctcctctt
tcacagtgcaaccctcctcccccagcctacacagtgacaaacaaaagtct
ttcaaggttgaagaaaatagagagatgggctctctgtttcttgaatttgc
tgctcaatacagacagagcttataatgaatggtgaagcaggttcctttga
atatcattgtgcctccacattaaacatagacaggaatgagagtcgtctcc
attctccaaactttctgtcttatatagtacacgtaagtactatattatat
atagtacatatatagtacaccttctgtcttatagtatataaatacatttc
gggaatcttaggcaaggatgagaaatatttctgctaaggattgcagcatc
ttgaaagcctaaaggaagcccatttccaccgggaactggcatttgagaga
aacagcacgagtcacggggcagagcacacagaagggcgttgttcacgaaa
cagcaaggttctagcaccaaaattcaggagtcacccaaggga
tccgcggaattctctccctccctcccttccttccttccttccttcctccc
ttctcttcttccttccttccttccttccttccttcctccctccctccctc
cctccctctctcccttccttccctccatgaaagggcgttggtccccaaac
ttccatcttccctactttgtctgggctcctcagcctgtcccatgttttca
acctgattggagatacatctattatcattatggtcactgtgataaaagcc
ttgaaaggggccacttaaaggagaaaggatctgttctaaggggatgagag
ggcgcagtccacaacggctgggagaacatggaggacgcgacatgacagat
atggcggacagatatggcagtgggggcaggatcaggttgtgataacaggg
ccttgaggtcactccttacactgccaacagcagttgggaagcagagagct
agatggattctggacccacctgtaatcctcaaagcctgctcctccagccc
agtggtctgtttcccaaacagctccactagctggggaaccagtgctcaaa
cacccaggcctattaagggtcatttcaaatccaaactatagcaggaagca
ttagcaaccaactggctcaaaaccactagaggccttcctcctacactgcc
gagtgtcaaaccaggaatctcagaacacagagcactcatgatgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_38773142_38774174
seq2: B6Ng01-171N07.b_47_1088

seq1  GAATTCTAGCGAATCATTCCCTGTCCATCTGGGCAGTGAGTGCACCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCGAATCATTCCCTGTCCATCTGGGCAGTGAGTGCACCAGCC  50

seq1  AGAAGGAACCTACTGCTAAGTGGCTCCCACTTCCGCCATTTTAATCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAACCTACTGCTAAGTGGCTCCCACTTCCGCCATTTTAATCCCTG  100

seq1  CCGTTGGGGCTCTTCTGACTTAGGCAGGACCTGTTGAAATCAAAGAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGGGGCTCTTCTGACTTAGGCAGGACCTGTTGAAATCAAAGAAAGG  150

seq1  GAGCGTATTTTATGGGCTCCTTTATTTATGGATAGGCAAACAAATGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTATTTTATGGGCTCCTTTATTTATGGATAGGCAAACAAATGGTGA  200

seq1  CTTGTCAGGACTTCCTTCAGGATCGTTAATGTGAGCAAACTATTTTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAGGACTTCCTTCAGGATCGTTAATGTGAGCAAACTATTTTGACA  250

seq1  GCAAACAAAAGACCCTATAAATCACTTGTTTGAATAGCTGGCATGGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAAAGACCCTATAAATCACTTGTTTGAATAGCTGGCATGGATCC  300

seq1  CGCGGTTTGGGAAGTGTTTCCGGTTGAAACCTCTGAGGGCAAAGACTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGTTTGGGAAGTGTTTCCGGTTGAAACCTCTGAGGGCAAAGACTGAG  350

seq1  CTGATGTAAATCGGGCACGGCCGACACCCCCAAAGTTTCCATACACTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTAAATCGGGCACGGCCGACACCCCCAAAGTTTCCATACACTCAA  400

seq1  TGCACATCACTCCACAGGGCATGAGAGGAAATCTGAAAATCAAGGGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATCACTCCACAGGGCATGAGAGGAAATCTGAAAATCAAGGGTTGT  450

seq1  ACTGGAGACTAAAAGCATCCAAAAGTGTGAGGAACACTGCAGACAGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGACTAAAAGCATCCAAAAGTGTGAGGAACACTGCAGACAGAAGT  500

seq1  CACAGCAGAACCAGAGGCAGAAGAAAGCATGACTGCCATTTCCTCCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGAACCAGAGGCAGAAGAAAGCATGACTGCCATTTCCTCCTCTT  550

seq1  TCACAGTGCAACCCTCCTCCCCCAGCCTACACAGTGACAAACAAAAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTGCAACCCTCCTCCCCCAGCCTACACAGTGACAAACAAAAGTCT  600

seq1  TTCAAGGTTGAAGAAAATAGAGAGATGGGCTCTCTGTTTCTTGAATTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTTGAAGAAAATAGAGAGATGGGCTCTCTGTTTCTTGAATTTGC  650

seq1  TGCTCAATACAGACAGAGCTTATAATGAATGGTGAAGCAGGTTCCTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAATACAGACAGAGCTTATAATGAATGGTGAAGCAGGTTCCTTTGA  700

seq1  ATATCATTGTGCCTCCACATTAAACATAGACAGGAATGAGAGTCGTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTGTGCCTCCACATTAAACATAGACAGGAATGAGAGTCGTCTCC  750

seq1  ATTCTCCAAACTTTCTGTCTTATATAGTACACGTAAGTACTATATTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCAAACTTTCTGTCTTATATAGTACACGTAAGTACTATATTATAT  800

seq1  ATAGTACATATATAGTACACCTTCTGTCTTATAGTATATAAATACATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACATATATAGTACACCTTCTGTCTTATAGTATATAAATACATTTC  850

seq1  -GGAATCTTAGGCAAGGATGAGAAATATTTCTGCTAAGGATTGCAGCATC  899
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCTTAGGCAAGGATGAGAAATATTTCTGCTAAGGATTGCAGCATC  900

seq1  TTGAAAGCCTAAAGGAAGCCCA-TTCCACC-GGAACTGGCATTTGAGAGA  947
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  TTGAAAGCCTAAAGGAAGCCCATTTCCACCGGGAACTGGCATTTGAGAGA  950

seq1  AACAAGCACGAGTCACGGGGCAGAGCACACAG-AGGGCGT--GTCACGAA  994
      ||| |||||||||||||||||||||||||||| |||||||   |||||||
seq2  AAC-AGCACGAGTCACGGGGCAGAGCACACAGAAGGGCGTTGTTCACGAA  999

seq1  ACAGC-AGGTTCCAGCACC-AAATTCA-GAGTCACCC-AGGGA  1033
      ||||| |||||| |||||| ||||||| ||||||||| |||||
seq2  ACAGCAAGGTTCTAGCACCAAAATTCAGGAGTCACCCAAGGGA  1042

seq1: chr16_38967510_38968081
seq2: B6Ng01-171N07.g_186_756 (reverse)

seq1  AAGCATCATGAGTGCTCTGTGTTCTGAGATTCCTGGTTTGACACTCGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCATGAGTGCTCTGTGTTCTGAGATTCCTGGTTTGACACTCGGCA  50

seq1  GTGTAGGAGGAAGGCCTCTAGTGGTTTTTGAGCCAGTTGGTTGCTAATGC  100
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTGTAGGAGGAAGGCCTCTAGTGG-TTTTGAGCCAGTTGGTTGCTAATGC  99

seq1  TTCCTGCTATAGTTTGGATTTGAAATGACCCTTAATAGGCCTGGGTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTATAGTTTGGATTTGAAATGACCCTTAATAGGCCTGGGTGTTT  149

seq1  GAGCACTGGTTCCCCAGCTAGTGGAGCTGTTTGGGAAACAGACCACTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGGTTCCCCAGCTAGTGGAGCTGTTTGGGAAACAGACCACTGGG  199

seq1  CTGGAGGAGCAGGCTTTGAGGATTACAGGTGGGTCCAGAATCCATCTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGAGCAGGCTTTGAGGATTACAGGTGGGTCCAGAATCCATCTAGC  249

seq1  TCTCTGCTTCCCAACTGCTGTTGGCAGTGTAAGGAGTGACCTCAAGGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTCCCAACTGCTGTTGGCAGTGTAAGGAGTGACCTCAAGGCCC  299

seq1  TGTTATCACAACCTGATCCTGCCCCCACTGCCATATCTGTCCGCCATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCACAACCTGATCCTGCCCCCACTGCCATATCTGTCCGCCATATC  349

seq1  TGTCATGTCGCGTCCTCCATGTTCTCCCAGCCGTTGTGGACTGCGCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTCGCGTCCTCCATGTTCTCCCAGCCGTTGTGGACTGCGCCCTC  399

seq1  TCATCCCCTTAGAACAGATCCTTTCTCCTTTAAGTGGCCCCTTTCAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCCTTAGAACAGATCCTTTCTCCTTTAAGTGGCCCCTTTCAAGGC  449

seq1  TTTTATCACAGTGACCATAATGATAATAGATGTATCTCCAATCAGGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCACAGTGACCATAATGATAATAGATGTATCTCCAATCAGGTTGA  499

seq1  AAACATGGGACAGGCTGAGGAGCCCAGACAAAGTAGGGAAGATGGAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGGACAGGCTGAGGAGCCCAGACAAAGTAGGGAAGATGGAAGTT  549

seq1  TGGGGACCAACGCCCTTTCATG  572
      ||||||||||||||||||||||
seq2  TGGGGACCAACGCCCTTTCATG  571