BAC Information

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BAC

Clone NameB6Ng01-172D11
Chromosome16 (Build37)
Map Location 34,930,717 - 35,119,669
singlet/doubletdoublet
Overlap geneMylk, Ptplb
Upstream geneItgb5, Umps, Kalrn, LOC100043670, Ropn1, Ccdc14
Downstream geneAdcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172D11.bB6Ng01-172D11.g
ACCGA000894GA000895
length1,1451,008
definitionB6Ng01-172D11.b B6Ng01-172D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,930,717 - 34,931,840)(35,118,671 - 35,119,669)
sequence
tgcctgggaatagcacaaggcctgtgatggtttagactaagtccttcatt
atatttctcctcatcatgaccaacagcatcagaaatccagctctgccagg
acccctcgtatgccaggcaagggcttttcctctgagctgtattcccagct
gcaacacccatattttatgaatgagaaaaacggaggctgttcagaaaaga
aaggcagtctacaggaggctctttggccccagagtgcctgagccagggca
aagcctgcatgactttcaatccagtgccttttttttctttttgtattttt
atacttccctggaaatgtctaaaaaggtagtattgggaaaacagtttctt
gcccttgaaatgcctacttaggagccatcagtaacctgtcaaagcctggt
gcccaaataaggcatctagaagaacagcttcgttgttgttcgggctactg
agtgtgaacactttagtcctgaaatcctaacttgttttatagccgtctca
caagacggagaggctttgtccccacatcctggtcacagagcagagatccg
gggtacataataagtgggagcatagacggagtgttctctaaaggaaagtg
tcttttgaaaacacacaattgcaaagtaaatgaaatcgttgctagccagg
agtctgacagggtatgggttctctggggttctaggaatgactttggagga
tgtagatctgctaagtcaaggtttcaaggtcaactttgatgtgtgctgtg
aggctcctgcttaatcctctgtgtgtctctttcccaccttccctttgttg
cccccttgtccaagtgggaaaccatggaaaactgggctaagcctgctaat
gaggttatctgttttgaacccctggcctcttgagcttcctattttacaca
gagagctgcaggcaagagagcaatttgtttcctcttatctggatagtgtc
agcaccttttccagatttgttggtcaagttgtgagtctcctttttccttt
ttcaccaataatattcaagaagtccttgtttgggttggagttccatttag
ccgggttcgtcattcctgcacccttaagaagccttgctttgctcaggggg
gggtgtcctaagaatctgcctgctccttactggatcgcagtgatg
gaattctggttctctgcaagagcagtaaatacttagctgccagtccatct
cttcagcctggtagcacggtattcctttctcttgggccaggctcatctgt
gcactcttctggccagggaagtgtgagaaagcccttttgggttaggggaa
ttggtctggccttttgatggaggactccctaggcctgaccaacctcttca
gcctcgtgaaacttctcacaaaatgaggtttttgctctcaagagtcagag
gcatggtgtggcggtttgaataagaatgaaccccatcagctgggcagtga
tggcgcacgccattaatcccagcactcgggaggcagaggcaggcagatct
ctgagttcaaggccagcctggtctacagagtgagttccaggacagccagg
gctacacagagaaactctgtctcaaaacaaaacaaaacaaaaaaaaatgg
aatggcccctatgggctcatatatttgaatgtcaagacattagggagtgg
cactacttgaaaaggattaggaggtgtggccttttacaaagtgtgtcagt
gtgggtgggccaggccagtgtctccgcccactgcctgcagagctggcaag
tagaccccttagcctactgtacgaataagaatgcggctcttagctacttc
tccagcaccacagttagctgtcactgtgctccctgccctgataatgggac
taaacctctggaactgtaagccagccccccagttaaatgtttcctttcct
aagagttgccttgctcatgggtgtctcttcacagcaatagaacaatagct
aagatacattgtcacttcttggctcttttgagggcggcctgtgtacagga
gctgtttcctgggaacccgagttagatagagcttccttagggcctgcatg
ggaagaccatggacttctgctcagcatttctctgaggcaagcgcaaacat
ccgtgggttatcaatgagctaacttctagccaatccctcacagaatagcc
tggcgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_34930717_34931840
seq2: B6Ng01-172D11.b_56_1200

seq1  TGCCTGGGAATAGCACAAGGCCTGTGATGGTTTAGACTAAGTCCTTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGAATAGCACAAGGCCTGTGATGGTTTAGACTAAGTCCTTCATT  50

seq1  ATATTTCTCCTCATCATGACCAACAGCATCAGAAATCCAGCTCTGCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTCCTCATCATGACCAACAGCATCAGAAATCCAGCTCTGCCAGG  100

seq1  ACCCCTCGTATGCCAGGCAAGGGCTTTTCCTCTGAGCTGTATTCCCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCGTATGCCAGGCAAGGGCTTTTCCTCTGAGCTGTATTCCCAGCT  150

seq1  GCAACACCCATATTTTATGAATGAGAAAAACGGAGGCTGTTCAGAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACACCCATATTTTATGAATGAGAAAAACGGAGGCTGTTCAGAAAAGA  200

seq1  AAGGCAGTCTACAGGAGGCTCTTTGGCCCCAGAGTGCCTGAGCCAGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGTCTACAGGAGGCTCTTTGGCCCCAGAGTGCCTGAGCCAGGGCA  250

seq1  AAGCCTGCATGACTTTCAATCCAGTGCCTTTTTTTTCTTTTTGTATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGCATGACTTTCAATCCAGTGCCTTTTTTTTCTTTTTGTATTTTT  300

seq1  ATACTTCCCTGGAAATGTCTAAAAAGGTAGTATTGGGAAAACAGTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCCCTGGAAATGTCTAAAAAGGTAGTATTGGGAAAACAGTTTCTT  350

seq1  GCCCTTGAAATGCCTACTTAGGAGCCATCAGTAACCTGTCAAAGCCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGAAATGCCTACTTAGGAGCCATCAGTAACCTGTCAAAGCCTGGT  400

seq1  GCCCAAATAAGGCATCTAGAAGAACAGCTTCGTTGTTGTTCGGGCTACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAATAAGGCATCTAGAAGAACAGCTTCGTTGTTGTTCGGGCTACTG  450

seq1  AGTGTGAACACTTTAGTCCTGAAATCCTAACTTGTTTTATAGCCGTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAACACTTTAGTCCTGAAATCCTAACTTGTTTTATAGCCGTCTCA  500

seq1  CAAGACGGAGAGGCTTTGTCCCCACATCCTGGTCACAGAGCAGAGATCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACGGAGAGGCTTTGTCCCCACATCCTGGTCACAGAGCAGAGATCCG  550

seq1  GGGTACATAATAAGTGGGAGCATAGACGGAGTGTTCTCTAAAGGAAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACATAATAAGTGGGAGCATAGACGGAGTGTTCTCTAAAGGAAAGTG  600

seq1  TCTTTTGAAAACACACAATTGCAAAGTAAATGAAATCGTTGCTAGCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAAAACACACAATTGCAAAGTAAATGAAATCGTTGCTAGCCAGG  650

seq1  AGTCTGACAGGGTATGGGTTCTCTGGGGTTCTAGGAATGACTTTGGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGACAGGGTATGGGTTCTCTGGGGTTCTAGGAATGACTTTGGAGGA  700

seq1  TGTAGATCTGCTAAGTCAAGG-TTCAAGGTCAAC-TTGATGTGTGCTGTG  748
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  TGTAGATCTGCTAAGTCAAGGTTTCAAGGTCAACTTTGATGTGTGCTGTG  750

seq1  AGGCTCCTGCTTAATCCTCTGTGTGTCTC-TTCCCACCTTCCCTTTGTTG  797
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGCTCCTGCTTAATCCTCTGTGTGTCTCTTTCCCACCTTCCCTTTGTTG  800

seq1  CCCCCTTGTCCAAGTGGGAAACCATGGAAAACT-GGCTAAGCCTGCTAAT  846
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCCCCTTGTCCAAGTGGGAAACCATGGAAAACTGGGCTAAGCCTGCTAAT  850

seq1  GAGGTTATCTGTTTTGAAACCCCTGGCCTCTTGAGC-TCCTA-TTTACAC  894
      |||||||||||||||| ||||||||||||||||||| ||||| |||||||
seq2  GAGGTTATCTGTTTTG-AACCCCTGGCCTCTTGAGCTTCCTATTTTACAC  899

seq1  AGAGAGCTGCAGGCAAGAGAGCAATTTG-TTCCTCTTATCTGGATAGTGT  943
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGAGAGCTGCAGGCAAGAGAGCAATTTGTTTCCTCTTATCTGGATAGTGT  949

seq1  CAGCACCTTTTCCAGATTTGTTGGCCAAG-TGTGAGT-TCCTTTTTC--T  989
      |||||||||||||||||||||||| |||| ||||||| |||||||||  |
seq2  CAGCACCTTTTCCAGATTTGTTGGTCAAGTTGTGAGTCTCCTTTTTCCTT  999

seq1  TTTCA-CAAT-ATATTCAAGAAGT-CTTGTTT-GGTTTGAGTTTCATTTA  1035
      ||||| |||| ||||||||||||| ||||||| |||| ||||| ||||||
seq2  TTTCACCAATAATATTCAAGAAGTCCTTGTTTGGGTTGGAGTTCCATTTA  1049

seq1  G-CGGGTTCGTTCATT-CTGCACCC-TAAGAAG-CTTGCTTTGCTCA-GG  1080
      | |||||||| ||||| |||||||| ||||||| ||||||||||||| ||
seq2  GCCGGGTTCG-TCATTCCTGCACCCTTAAGAAGCCTTGCTTTGCTCAGGG  1098

seq1  GGGTGTGCCCAAAGATTCTGCTGTCTC--TACT-GATCGCAGTGATG  1124
      ||| ||| || |||| |||||   |||  |||| |||||||||||||
seq2  GGGGGTGTCCTAAGAATCTGCCTGCTCCTTACTGGATCGCAGTGATG  1145

seq1: chr16_35118671_35119669
seq2: B6Ng01-172D11.g_69_1076 (reverse)

seq1  ACACG-CAGGCTA-TCTGTGA-GGATTGGCTAGAAGTTAGCTCATTGATA  47
      ||||| ||||||| ||||||| ||||||||||||||||||||||||||||
seq2  ACACGCCAGGCTATTCTGTGAGGGATTGGCTAGAAGTTAGCTCATTGATA  50

seq1  A-CCACGGATGTTTGCGCTTGCCTCAGAGAAATGCTGAGCAG-AGTCCAT  95
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACCCACGGATGTTTGCGCTTGCCTCAGAGAAATGCTGAGCAGAAGTCCAT  100

seq1  GGTC-TACCATGCAGGCCCTAAGGAAGCTCTATCTAACTCGGGTT-CCAG  143
      |||| | |||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTCTTCCCATGCAGGCCCTAAGGAAGCTCTATCTAACTCGGGTTCCCAG  150

seq1  GAAACAGCTCCTGTACACAGGCCGCCCCTCAAAAGAGCCAAGAAGTGACA  193
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAAACAGCTCCTGTACACAGGCCG-CCCTCAAAAGAGCCAAGAAGTGACA  199

seq1  ATGTATCTTAGCTATTGTTCTATTGCTGTGAAGAGACA-CCATGAGCAAG  242
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGTATCTTAGCTATTGTTCTATTGCTGTGAAGAGACACCCATGAGCAAG  249

seq1  GCAACTCTTAGGAAAGGAAACATTTAACTGGGGGGCTGGCTTACAGTTCC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCTTAGGAAAGGAAACATTTAACTGGGGGGCTGGCTTACAGTTCC  299

seq1  AGAGGTTTAGT-CCATTATCAGGGCAGGGAGCACAGTGACAGCTAACTGT  341
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTTAGTCCCATTATCAGGGCAGGGAGCACAGTGACAGCTAACTGT  349

seq1  GGTGCTGGAGAAGTAGCTAAGAGCCGCATTCTTATTCGTACAGTAGGCTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGAGAAGTAGCTAAGAGCCGCATTCTTATTCGTACAGTAGGCTA  399

seq1  AGGGGTCTAC-TGCCAGCTCTGCAGGCAGTGGGCGGAGACACTGGCCTGG  440
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCTACTTGCCAGCTCTGCAGGCAGTGGGCGGAGACACTGGCCTGG  449

seq1  CCCACCCACACTGACACACTTTGTAAAAGGCCACACCTCCTAATCCTTTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACACTGACACACTTTGTAAAAGGCCACACCTCCTAATCCTTTT  499

seq1  CAAGTAGTGCCACTCCCTAATGTCTTGACATTCAAATATATGAGCCCATA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGTGCCACTCCCTAATGTCTTGACATTCAAATATATGAGCCCATA  549

seq1  GGGGCCATTCCATTTTTTTTTGTTTTGTTTTGTTTTGAGACAGAGTTTCT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCATTCCATTTTTTTTTGTTTTGTTTTGTTTTGAGACAGAGTTTCT  599

seq1  CTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCT  649

seq1  TGAACTCAGAGATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAATGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGAGATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAATGG  699

seq1  CGTGCGCCATCACTGCCCAGCTGATGGGGTTCATTCTTATTCAAACCGCC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCGCCATCACTGCCCAGCTGATGGGGTTCATTCTTATTCAAACCGCC  749

seq1  ACACCATGCCTCTGACTCTTGAGAGCAAAAACCTCATTTTGTGAGAAGTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGCCTCTGACTCTTGAGAGCAAAAACCTCATTTTGTGAGAAGTT  799

seq1  TCACGAGGCTGAAGAGGTTGGTCAGGCCTAGGGAGTCCTCCATCAAAAGG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAGGCTGAAGAGGTTGGTCAGGCCTAGGGAGTCCTCCATCAAAAGG  849

seq1  CCAGACCAATTCCCCTAACCCAAAAGGGCTTTCTCACACTTCCCTGGCCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCAATTCCCCTAACCCAAAAGGGCTTTCTCACACTTCCCTGGCCA  899

seq1  GAAGAGTGCACAGATGAGCCTGGCCCAAGAGAAAGGAATACCGTGCTACC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTGCACAGATGAGCCTGGCCCAAGAGAAAGGAATACCGTGCTACC  949

seq1  AGGCTGAAGAGATGGACTGGCAGCTAAGTATTTACTGCTCTTGCAGAGAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAGAGATGGACTGGCAGCTAAGTATTTACTGCTCTTGCAGAGAA  999

seq1  CCAGAATTC  999
      |||||||||
seq2  CCAGAATTC  1008