BAC Information

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BAC

Clone NameB6Ng01-172I07
Chromosome16 (Build37)
Map Location 45,269,207 - 45,449,715
singlet/doubletdoublet
Overlap geneCd200, LOC385905, Gm609
Upstream geneSidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla
Downstream geneLOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172I07.bB6Ng01-172I07.g
ACCGA001113GA001114
length849619
definitionB6Ng01-172I07.b B6Ng01-172I07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,269,207 - 45,269,822)(45,449,097 - 45,449,715)
sequence
ggaattcagcatagcgacacactattggcttattcaaacatcagcagaaa
aattaaatgtacgtgcagggtgtgagagttctgtgagttgttgactcagt
tcagatagccctgttatgtcctcacattcctccttatctttatggtcaag
atgttcccaggaatgttttaactatggggcatacccagatttgtttttct
tttttcacagccccaggcagcctctaggctcacaaacaaccagcaatttc
tgagtactttatatgacttacaggtcttgaaatttcatctttctttcacc
acggaccttgttccagcctgtgttttctttggttgatggctcagtctctg
aaaattcctaggggtccaggttagttgactctgttagtcttcctgtgggg
ttcccatccccttgaaggccttcagtccttctcccaactcttctataaga
gtccctgatcttatagttgcaatgtttggttgtggttacctgtgtctgtt
tcagtcagctgctgggtagagcctctcagaggacagttatactaggctcc
tgtctgcaagcataacagagtgtcattaataacatcagaaattggtgttt
gcccatgggatgggtttcaagttgggccagttattggttggtcatttctt
cattttctcctccatttttgtccctgtgtttcttttagacagaaaaactt
ttgggtcaaacgtttttgtgggtgagttgaaataagtcagacttggaata
agtcagaccttgaggctggggatacatccatagccaaggacagaacagtc
ttggcctgaaaaaaaaaatagatctcctcctccctcctcctcctccacc
gaattcaataaatattgtcctattgttttctgctcattctgaatgattga
attaagaaaatttagtccatttgttttcttcaggttaagataataactag
tgcttaagtgcggagtcttgagaggtgactcagtaagtaagagttaggag
catattgggttctacatgaatacccaaggtctttcccaagcacctacatc
agaaggctcacaagcacctataaatcaagctctaagggatacataaacct
cttgtatcctcggagggtatatgcactcagggacacataccccatgtcac
aagcataatttaaaaataataaatctctcaaatttgaattcaggaacaaa
aaatatggtaaactgaaaagaggggctaaggtttagtgagtaagcttctg
cttagcctgaaggagatcctgcagtcaattacagcagcaagtaaaattaa
taaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg
aaggaaggaaggaaggaaggaaggataaggaaaacttctctcaggaaata
gctccaactatagtacagaacagaacctggaaaggcatgagaaggaagag
gaggaggaagagaaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_45269207_45269822
seq2: B6Ng01-172I07.b_277_894

seq1  ACAAACAACCAGCAATTTCTGAGTACTTTATATGACTTACAGGTCTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAACCAGCAATTTCTGAGTACTTTATATGACTTACAGGTCTTGAA  50

seq1  ATTTCATCTTTCTTTCACCACGGACCTTGTTCCAGCCTGTGTTTTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATCTTTCTTTCACCACGGACCTTGTTCCAGCCTGTGTTTTCTTTG  100

seq1  GTTGATGGCTCAGTCTCTGAAAATTCCTAGGGGTCCAGGTTAGTTGACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGGCTCAGTCTCTGAAAATTCCTAGGGGTCCAGGTTAGTTGACTC  150

seq1  TGTTAGTCTTCCTGTGGGGTTCCCATCCCCTTGAAGGCCTTCAGTCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTCTTCCTGTGGGGTTCCCATCCCCTTGAAGGCCTTCAGTCCTTC  200

seq1  TCCCAACTCTTCTATAAGAGTCCCTGATCTTATAGTTGCAATGTTTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTCTTCTATAAGAGTCCCTGATCTTATAGTTGCAATGTTTGGTT  250

seq1  GTGGTTACCTGTGTCTGTTTCAGTCAGCTGCTGGGTAGAGCCTCTCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTACCTGTGTCTGTTTCAGTCAGCTGCTGGGTAGAGCCTCTCAGAG  300

seq1  GACAGTTATACTAGGCTCCTGTCTGCAAGCATAACAGAGTGTCATTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTATACTAGGCTCCTGTCTGCAAGCATAACAGAGTGTCATTAATA  350

seq1  ACATCAGAAATTGGTGTTTGCCCATGGGATGGGTTTCAAGTTGGGCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGAAATTGGTGTTTGCCCATGGGATGGGTTTCAAGTTGGGCCAGT  400

seq1  TATTGGTTGGTCATTTCTTCATTTTCTCCTCCATTTTTGTCCCTGTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTTGGTCATTTCTTCATTTTCTCCTCCATTTTTGTCCCTGTGTTT  450

seq1  CTTTTAGACAGAAAAACTTTTGGGTCAAACG-TTTTGTGGGTGAGTTGAA  499
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTTTAGACAGAAAAACTTTTGGGTCAAACGTTTTTGTGGGTGAGTTGAA  500

seq1  ATAAGTCAGACTTGGAATAAGTCAGACCTTGAGGCTGGGGATACATCCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCAGACTTGGAATAAGTCAGACCTTGAGGCTGGGGATACATCCAT  550

seq1  AGCCAAGGACAGAACAGTCTTGGCCTGAAAAAAAAAATAGATCTCCTCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGACAGAACAGTCTTGGCCTGAAAAAAAAAATAGATCTCCTCCT  600

seq1  -CCTCCTCCTCCTCCTCC  616
       |||||||||||||| ||
seq2  CCCTCCTCCTCCTCCACC  618

seq1: chr16_45449097_45449715
seq2: B6Ng01-172I07.g_61_679 (reverse)

seq1  CCTCCTTCTCTTCCTCCTCCTCTTCCTTCTCATGCCTTTCCAGGTTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCTCTTCCTCCTCCTCTTCCTTCTCATGCCTTTCCAGGTTCTGT  50

seq1  TCTGTACTATAGTTGGAGCTATTTCCTGAGAGAAGTTTTCCTTATCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACTATAGTTGGAGCTATTTCCTGAGAGAAGTTTTCCTTATCCTTC  100

seq1  CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  150

seq1  TCCTTCCTTCCTTTCTTTATTAATTTTACTTGCTGCTGTAATTGACTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTTTCTTTATTAATTTTACTTGCTGCTGTAATTGACTGCA  200

seq1  GGATCTCCTTCAGGCTAAGCAGAAGCTTACTCACTAAACCTTAGCCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCCTTCAGGCTAAGCAGAAGCTTACTCACTAAACCTTAGCCCCTC  250

seq1  TTTTCAGTTTACCATATTTTTTGTTCCTGAATTCAAATTTGAGAGATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTTTACCATATTTTTTGTTCCTGAATTCAAATTTGAGAGATTTA  300

seq1  TTATTTTTAAATTATGCTTGTGACATGGGGTATGTGTCCCTGAGTGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTAAATTATGCTTGTGACATGGGGTATGTGTCCCTGAGTGCATA  350

seq1  TACCCTCCGAGGATACAAGAGGTTTATGTATCCCTTAGAGCTTGATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCCGAGGATACAAGAGGTTTATGTATCCCTTAGAGCTTGATTTAT  400

seq1  AGGTGCTTGTGAGCCTTCTGATGTAGGTGCTTGGGAAAGACCTTGGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTTGTGAGCCTTCTGATGTAGGTGCTTGGGAAAGACCTTGGGTAT  450

seq1  TCATGTAGAACCCAATATGCTCCTAACTCTTACTTACTGAGTCACCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAGAACCCAATATGCTCCTAACTCTTACTTACTGAGTCACCTCTC  500

seq1  AAGACTCCGCACTTAAGCACTAGTTATTATCTTAACCTGAAGAAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCCGCACTTAAGCACTAGTTATTATCTTAACCTGAAGAAAACAAA  550

seq1  TGGACTAAATTTTCTTAATTCAATCATTCAGAATGAGCAGAAAACAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTAAATTTTCTTAATTCAATCATTCAGAATGAGCAGAAAACAATAG  600

seq1  GACAATATTTATTGAATTC  619
      |||||||||||||||||||
seq2  GACAATATTTATTGAATTC  619