BAC Information

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BAC

Clone NameB6Ng01-172K22
Chromosome16 (Build37)
Map Location 81,281,630 - 81,461,551
singlet/doubletdoublet
Overlap geneNcam2
Upstream geneLOC621365, LOC100039724
Downstream geneLOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172K22.bB6Ng01-172K22.g
ACCGA001234GA001235
length1,0811,182
definitionB6Ng01-172K22.b B6Ng01-172K22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,281,630 - 81,282,706)(81,460,353 - 81,461,551)
sequence
gaattctgtctgtgcagtatcactcactgtcagaatgcattcttaggtaa
atacaaacttaggctagatataaaatagtttcaactttattttttgtttt
gttttgattttttttgttttgttttgttttgttttttttcgagacaaggt
ttctctgtgtagccctggctgtcctggaactcactttgtagaccaggctg
gccttgaaactttattaccacatcatcttttttctctagtgaaaaaaata
cttctaacctctttttagtgatcaaaattgtctcactttgtaacatcata
atgaagttttgtttccacatagttataaaatcaggtatactgtttttact
cagccttactattatatataaaacaatataagaaacgttttaacaaattt
ctatatgccagaatcataatggagaggttaaacatgtcaaactcacttgt
tacgtaagttcattgggatcaatttatatacatatttttaaacaggaagg
ttcagtgaaagaattgcatttaatttcagagctggtatttttatgcatat
taagcctgaaggatgttgtccatatatttctttaccttccaatgtatcac
acaaggctgtccttgcctgtgttgcagagagatgtacatatgaagagtaa
caagacataggcacctctatatatttgtgtcagtattgaagctactacaa
aaggttttgaaccccaaaccatcatagcaggtaatgcatttaagtagaca
accgctgctggttaaggtgatgttcattgcatgaaacagataaaccagca
ttggcagcagcactgatgaatacaaaagatgcaagctggggaaagcaaga
ccacaggatatgaacatgtgagtgtatgtagttttactcacatgttgcag
ataacgtattgatgacctactaatctatgtacagtgtgccagccattttg
ttcaacatgtaattgaaacttaaaaggaaatgaaaaggaatgaaaccagt
attcatgtcagtgcctgaggaataactgataactgcagcttagtccctga
aactctgtgtgtgtgtgtgtgtgtgtgtgtg

gaattcaacttgtactttctttattagaaaatactcattactgattttta
ttcttttgtactttaactattaattagccaacatacatttatgttacagt
gttgtgtacacatatgacttacaaaaatagaaattctaattaaaaatccc
ctttttcacatgaaataatataaatttatatcattaagatctagtccata
taacttttgttagtaaaaattgatgtgatagtgaagttaataacttttgt
ttcttcacagcagtaattatcatttccaagttctttccccagtgaaattt
atttcatttactgtttatttggttataataatattggctattagcattct
ctagtatattttaaatacataaatagtttataacatccttacacattgta
aaatcttatatattccccttactagcttttttctcacttcatttttctca
tattttgtcttattatttttaattgtgaactgaattgctcatatgataca
ctgaaataaaacactcagaacctctctaggatagagatattaatatctct
ttatcagtttagatttcaacttaaaagacgtcttttaaaaatctttgctg
ctggaaagagaacaaaacttttatatgccatagcgactttcaaatgaatt
caaagcatgtcgataatgccagagacataaaggcatttaaaaaatgcata
cctgaaatgtacatcaatgaaaatataacctgatggaaaatctttatatg
gcactttctatgtgaccatagaaattgagtatagaaatatcagtggagaa
cacaaagatgatgccaaaaagtaagtcagaaaaaaaaaaaaaacccagaa
atgacataaatttctaaacaattacatgaaatattgttctgacccaagga
ggataaaatatttaatcacacaacagtattgcttcaaaacatgtactaga
cattataaactgaaattaaaacagacaatacacatgcaaatgtaaaagac
attagaatagatttagatttcagtaactgatttataaaactagtagatgt
ctgatacgttcagataacctacactgtgaacagaatgttgaatatacctc
cctatgacctatttttttatgcaggaagttactagaaatttgctgaacca
agaaggtggtgcaatgaagattagtttatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_81281630_81282706
seq2: B6Ng01-172K22.b_42_1122

seq1  GAATTCTGTCTGTGCAGTATCACTCACTGTCAGAATGCATTCTTAGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTGTGCAGTATCACTCACTGTCAGAATGCATTCTTAGGTAA  50

seq1  ATACAAACTTAGGCTAGATATAAAATAGTTTCAACTTTATTTTTTGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACTTAGGCTAGATATAAAATAGTTTCAACTTTATTTTTTGTTTT  100

seq1  GTTTTGATTTTTTTTGTTTTGTTTTGTTTTGTTTTTTTTCGAGACAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATTTTTTTTGTTTTGTTTTGTTTTGTTTTTTTTCGAGACAAGGT  150

seq1  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTG  200

seq1  GCCTTGAAACTTTATTACCACATCATCTTTTTTCTCTAGTGAAAAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAAACTTTATTACCACATCATCTTTTTTCTCTAGTGAAAAAAATA  250

seq1  CTTCTAACCTCTTTTTAGTGATCAAAATTGTCTCACTTTGTAACATCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAACCTCTTTTTAGTGATCAAAATTGTCTCACTTTGTAACATCATA  300

seq1  ATGAAGTTTTGTTTCCACATAGTTATAAAATCAGGTATACTGTTTTTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTTTGTTTCCACATAGTTATAAAATCAGGTATACTGTTTTTACT  350

seq1  CAGCCTTACTATTATATATAAAACAATATAAGAAACGTTTTAACAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTACTATTATATATAAAACAATATAAGAAACGTTTTAACAAATTT  400

seq1  CTATATGCCAGAATCATAATGGAGAGGTTAAACATGTCAAACTCACTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGCCAGAATCATAATGGAGAGGTTAAACATGTCAAACTCACTTGT  450

seq1  TACGTAAGTTCATTGGGATCAATTTATATACATATTTTTAAACAGGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTAAGTTCATTGGGATCAATTTATATACATATTTTTAAACAGGAAGG  500

seq1  TTCAGTGAAAGAATTGCATTTAATTTCAGAGCTGGTATTTTTATGCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGAAAGAATTGCATTTAATTTCAGAGCTGGTATTTTTATGCATAT  550

seq1  TAAGCCTGAAGGATGTTGTCCATATATTTCTTTACCTTCCAATGTATCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTGAAGGATGTTGTCCATATATTTCTTTACCTTCCAATGTATCAC  600

seq1  ACAAGGCTGTCCTTGCCTGTGTTGCAGAGAGATGTACATATGAAGAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCTGTCCTTGCCTGTGTTGCAGAGAGATGTACATATGAAGAGTAA  650

seq1  CAAGACATAGGCACCTCTATATATTTGTGTCAGTATTGAAGCTACTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACATAGGCACCTCTATATATTTGTGTCAGTATTGAAGCTACTACAA  700

seq1  AAGGTTTTGAACCCCAAACCATCATAGCAGGTAATGCATTTAAGTAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTGAACCCCAAACCATCATAGCAGGTAATGCATTTAAGTAGACA  750

seq1  ACCGCTGCTGGTTAAGGTGATGTTCATTGCATGAAACAGATAAACCAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTGCTGGTTAAGGTGATGTTCATTGCATGAAACAGATAAACCAGCA  800

seq1  TTGGCAGCAGCACTGATGAATACAAAAGATGCAAGCTGGGGAAAGCAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGCAGCACTGATGAATACAAAAGATGCAAGCTGGGGAAAGCAAGA  850

seq1  CCACAGGATATGAACATGTGAGTGTATGTAGTTTTACTCACATGTTGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGATATGAACATGTGAGTGTATGTAGTTTTACTCACATGTTGCAG  900

seq1  ATAACGTATTGATGACCTACTAATCTATGTACAGTGTGCCAGCCATTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACGTATTGATGACCTACTAATCTATGTACAGTGTGCCAGCCATTTTG  950

seq1  TTCAACATGTAATTGAAACTTAAAAGGAAATGAAAAGGAATGAAACAAGT  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCAACATGTAATTGAAACTTAAAAGGAAATGAAAAGGAATGAAACCAGT  1000

seq1  A-TCATGTCAGTG-CTGAGG-ATAACTGATAACTGCAGGCTTAGT-CCTG  1046
      | ||||||||||| |||||| |||||||||||||||| ||||||| ||||
seq2  ATTCATGTCAGTGCCTGAGGAATAACTGATAACTGCA-GCTTAGTCCCTG  1049

seq1  -AACTCTGTGTGTGTGTGTGTGTGTGTGTGTG  1077
       |||||||||||||||||||||||||||||||
seq2  AAACTCTGTGTGTGTGTGTGTGTGTGTGTGTG  1081


seq1: chr16_81460353_81461551
seq2: B6Ng01-172K22.g_61_1242 (reverse)

seq1  TTCAT-AACTTATCTTCAATTCACCACTTCTTTTGTTTCAGCAAATATTC  49
      ||||| |||| ||||||| | |||||| | | ||| |||||||||| |||
seq2  TTCATAAACTAATCTTCATTGCACCACCT-TCTTGGTTCAGCAAAT-TTC  48

seq1  TAGTAAATATTCTCTGCATTTAAAAAAAATA-GTCATAGGGAGGTATA-T  97
      ||||||   ||| ||||||   ||||||||| |||||||||||||||| |
seq2  TAGTAA--CTTC-CTGCAT---AAAAAAATAGGTCATAGGGAGGTATATT  92

seq1  CACATTTCTGTTTCACAGTGGTAGTTATCTGAACGTATCCAGACATCTAA  147
      ||   ||||| |||||||||   ||||||||||||||| |||||||||| 
seq2  CAACATTCTG-TTCACAGTGTAGGTTATCTGAACGTAT-CAGACATCTA-  139

seq1  CCTAGTTTTTATAAATCAGTTACTGAAATCTAAATTCTTATTTTCTAAAT  197
       |||| ||||||||||||||||||||||||||||    | | |||| |||
seq2  -CTAG-TTTTATAAATCAGTTACTGAAATCTAAA----TCTATTCT-AAT  182

seq1  GTCTTTTACATTTGCATGTGTATTTGTCTGTTTTTAATTTCAGTTTATAA  247
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  GTCTTTTACATTTGCATGTGTA-TTGTCTG-TTTTAATTTCAGTTTATAA  230

seq1  TGTTCTAGTACATGTTTTTGAAGCAATACTGTTGTGTGATTAAATA-TTT  296
      || ||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  TG-TCTAGTACATG-TTTTGAAGCAATACTGTTGTGTGATTAAATATTTT  278

seq1  ATCCTCCTTGGGTCAGAACAATATTTCATGTAATTGTTTAGAAATTTATG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTTGGGTCAGAACAATATTTCATGTAATTGTTTAGAAATTTATG  328

seq1  TCATTTCTGGG-TTTTTTTTTTTTTCTGACTTACTTTTTGGCATCATCTT  395
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTGGGTTTTTTTTTTTTTTCTGACTTACTTTTTGGCATCATCTT  378

seq1  TGTGTTCTCCACTGATATTTCTATACTCAATTTCTATGGTCACATAGAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTCCACTGATATTTCTATACTCAATTTCTATGGTCACATAGAAA  428

seq1  GTGCCATATAAAGATTTTCCATCAGGTTATATTTTCATTGATGTACATTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATATAAAGATTTTCCATCAGGTTATATTTTCATTGATGTACATTT  478

seq1  CAGGTATGCATTTTTTAAATGCCTTTATGTCTCTGGCATTATCGACATGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATGCATTTTTTAAATGCCTTTATGTCTCTGGCATTATCGACATGC  528

seq1  TTTGAATTCATTTGAAAGTCGCTATGGCATATAAAAGTTTTGTTCTCTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTCATTTGAAAGTCGCTATGGCATATAAAAGTTTTGTTCTCTTT  578

seq1  CCAGCAGCAAAGATTTTTAAAAGACGTCTTTTAAGTTGAAATCTAAACTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCAAAGATTTTTAAAAGACGTCTTTTAAGTTGAAATCTAAACTG  628

seq1  ATAAAGAGATATTAATATCTCTATCCTAGAGAGGTTCTGAGTGTTTTATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGATATTAATATCTCTATCCTAGAGAGGTTCTGAGTGTTTTATT  678

seq1  TCAGTGTATCATATGAGCAATTCAGTTCACAATTAAAAATAATAAGACAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTATCATATGAGCAATTCAGTTCACAATTAAAAATAATAAGACAA  728

seq1  AATATGAGAAAAATGAAGTGAGAAAAAAGCTAGTAAGGGGAATATATAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAGAAAAATGAAGTGAGAAAAAAGCTAGTAAGGGGAATATATAAG  778

seq1  ATTTTACAATGTGTAAGGATGTTATAAACTATTTATGTATTTAAAATATA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAATGTGTAAGGATGTTATAAACTATTTATGTATTTAAAATATA  828

seq1  CTAGAGAATGCTAATAGCCAATATTATTATAACCAAATAAACAGTAAATG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAATGCTAATAGCCAATATTATTATAACCAAATAAACAGTAAATG  878

seq1  AAATAAATTTCACTGGGGAAAGAACTTGGAAATGATAATTACTGCTGTGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTTCACTGGGGAAAGAACTTGGAAATGATAATTACTGCTGTGA  928

seq1  AGAAACAAAAGTTATTAACTTCACTATCACATCAATTTTTACTAACAAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAAAGTTATTAACTTCACTATCACATCAATTTTTACTAACAAAA  978

seq1  GTTATATGGACTAGATCTTAATGATATAAATTTATATTATTTCATGTGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATGGACTAGATCTTAATGATATAAATTTATATTATTTCATGTGAA  1028

seq1  AAAGGGGATTTTTAATTAGAATTTCTATTTTTGTAAGTCATATGTGTACA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGATTTTTAATTAGAATTTCTATTTTTGTAAGTCATATGTGTACA  1078

seq1  CAACACTGTAACATAAATGTATGTTGGCTAATTAATAGTTAAAGTACAAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGTAACATAAATGTATGTTGGCTAATTAATAGTTAAAGTACAAA  1128

seq1  AGAATAAAAATCAGTAATGAGTATTTTCTAATAAAGAAAGTACAAGTTGA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAAATCAGTAATGAGTATTTTCTAATAAAGAAAGTACAAGTTGA  1178

seq1  ATTC  1199
      ||||
seq2  ATTC  1182


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