BAC Information

Click to search

BAC

Clone NameB6Ng01-172P01
Chromosome16 (Build37)
Map Location 53,298,877 - 53,299,867
singlet/doubletsinglet
Overlap genenone
Upstream geneAlcam, LOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172P01.bB6Ng01-172P01.g
ACCGA001424GA001425
length1,153959
definitionB6Ng01-172P01.b B6Ng01-172P01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatacaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaatactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggtggttcctca
gaaaattggaaatagtactagcggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctcgaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagacga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatacaaacgctgacaccattgcatacactagcaagatttatcgaaag
gacccagatgtagctgtctcttgtgagactatgccggggcctagcaaaca
cagaagtggttgctcacagtcagctaatggatggatcacagggctcccaa
tggaggagctagagaaagtacccaaaggagctaatgggatctgcaaccct
ataggtggatcaacattatgacctaaccagtacccttggagctcttgact
ctagctgcatatgtatcaaagattgcttattcgacatattgtaagagagg
ccatgaacgcaatcttaatgccctcatacgggaactccaggtcaaaatgg
gga

gaattccaaacgaaaggtgcttgcaatatagcaggtaggtgtgagccacc
taaatagattcaacctgttatgtgcttcaagatgggtttgctatttccag
tttccttataatgcttatatctgttcggggaaggaaaccccaataagcaa
gcttattagatatgcataattaaagttaactgtccttgagtgggatatgg
agggccctttagaggggagaggactgaatatatccacacagagactttag
aaaatcattttcattacttggatccatcttgcatttccttttcctctcag
tgagaagaggaagacagttacgggagttctactgtaaggacacctgtcat
aaaacagacactaataacatctgctttcatattcccaagtgatccaaatt
gaaaatattaagatttttcatattaaaattaatacataagttattgaaac
ttatcaatttcaatgttgagtctactcataaatttaaataacaaaaaatg
aaaaaatacaattttaggaatatcacaaggctttcaaattgttactgaaa
tttgtttttattccattaaaacttaatttctgtttcattctgataaaata
ttcatacatagttaatctttatttcagaggtccatttgtaaaaccttaca
tattcccccccctttccatttctcctccaaatccacccatatacccttcc
ttgctttctttcagtttcatggctgctgctgctgccgtttcttcttcttt
tcttctcttcttcttcttctcttcttcttcttctcttcatctcttcttct
tcttctcttctctcttctttttctttccttctcctccttctctctttctt
ctcctcctcctccttctcttccttttgtggtattgtatacaccccacacc
acacaacacacaccaccaaccatattatgtaatatatatttgtaatatac
ttctgtagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_53298877_53299867
seq2: B6Ng01-172P01.g_64_1022 (reverse)

seq1  ACTACAGAAGTTATATTTACAAATATATTTATTTACATATATATGTGTTT  50
      |||||||||| |||| ||||||||||||    ||||||| ||||| ||| 
seq2  ACTACAGAAG-TATA-TTACAAATATAT---ATTACATA-ATATG-GTTG  43

seq1  GTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTAATAACAAATACCA  100
      |||   ||||||| ||||||| ||||| | |||| ||      |||||||
seq2  GTG---GTGTGTG-TTGTGTG-GTGTG-GGGTGTATA-----CAATACCA  82

seq1  CAAAAAGGAAGGAGAAGGAGGAGGAGGAGAAGAAAAGAAGAAGAAGGAGG  150
      | |||||||| ||||||||||||||||||||| |||||   |||||||||
seq2  C-AAAAGGAA-GAGAAGGAGGAGGAGGAGAAG-AAAGA--GAGAAGGAGG  127

seq1  AGAAGGAAAAGAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  200
      |||||||||   ||||||||||   ||||| |||||||||||||| ||| 
seq2  AGAAGGAAA--GAAAAAGAAGA--GAGAAG-AGAAGAAGAAGAAG-AGAT  171

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGAAGAA  250
      |||| |||||||||||||| |||||||||||||| |||||||||||||||
seq2  GAAG-AGAAGAAGAAGAAG-AGAAGAAGAAGAAG-AGAAGAAAAGAAGAA  218

seq1  GAAACGGCAGCAGCAGCAGCCATGAAACTGAAAGAAAGCAAGGAAGGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGGCAGCAGCAGCAGCCATGAAACTGAAAGAAAGCAAGGAAGGGTA  268

seq1  TATGGGTGGATTTGGAGGAGAAATGGAAAGGGGGGGGAATATGTAAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTGGATTTGGAGGAGAAATGGAAAGGGGGGGGAATATGTAAGGTT  318

seq1  TTACAAATGGACCTCTGAAATAAAGATTAACTATGTATGAATATTTTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATGGACCTCTGAAATAAAGATTAACTATGTATGAATATTTTATC  368

seq1  AGAATGAAACAGAAATTAAGTTTTAATGGAATAAAAACAAATTTCAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAACAGAAATTAAGTTTTAATGGAATAAAAACAAATTTCAGTAA  418

seq1  CAATTTGAAAGCCTTGTGATATTCCTAAAATTGTATTTTTTCATTTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGAAAGCCTTGTGATATTCCTAAAATTGTATTTTTTCATTTTTTG  468

seq1  TTATTTAAATTTATGAGTAGACTCAACATTGAAATTGATAAGTTTCAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAATTTATGAGTAGACTCAACATTGAAATTGATAAGTTTCAATA  518

seq1  ACTTATGTATTAATTTTAATATGAAAAATCTTAATATTTTCAATTTGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGTATTAATTTTAATATGAAAAATCTTAATATTTTCAATTTGGAT  568

seq1  CACTTGGGAATATGAAAGCAGATGTTATTAGTGTCTGTTTTATGACAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGAATATGAAAGCAGATGTTATTAGTGTCTGTTTTATGACAGGT  618

seq1  GTCCTTACAGTAGAACTCCCGTAACTGTCTTCCTCTTCTCACTGAGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTACAGTAGAACTCCCGTAACTGTCTTCCTCTTCTCACTGAGAGGA  668

seq1  AAAGGAAATGCAAGATGGATCCAAGTAATGAAAATGATTTTCTAAAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATGCAAGATGGATCCAAGTAATGAAAATGATTTTCTAAAGTCT  718

seq1  CTGTGTGGATATATTCAGTCCTCTCCCCTCTAAAGGGCCCTCCATATCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGATATATTCAGTCCTCTCCCCTCTAAAGGGCCCTCCATATCCC  768

seq1  ACTCAAGGACAGTTAACTTTAATTATGCATATCTAATAAGCTTGCTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGACAGTTAACTTTAATTATGCATATCTAATAAGCTTGCTTATT  818

seq1  GGGGTTTCCTTCCCCGAACAGATATAAGCATTATAAGGAAACTGGAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTCCTTCCCCGAACAGATATAAGCATTATAAGGAAACTGGAAATA  868

seq1  GCAAACCCATCTTGAAGCACATAACAGGTTGAATCTATTTAGGTGGCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCCATCTTGAAGCACATAACAGGTTGAATCTATTTAGGTGGCTCA  918

seq1  CACCTACCTGCTATATTGCAAGCACCTTTCGTTTGGAATTC  991
      |||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACCTGCTATATTGCAAGCACCTTTCGTTTGGAATTC  959


| Home | SequenceCutter | Blast | Download |