BAC Information

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BAC

Clone NameB6Ng01-173B03
Chromosome16 (Build37)
Map Location 50,837,209 - 50,992,734
singlet/doubletdoublet
Overlap genenone
Upstream geneCd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik
Downstream geneEG639820, LOC627543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173B03.bB6Ng01-173B03.g
ACCGA001519GA001520
length1,051516
definitionB6Ng01-173B03.b B6Ng01-173B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,991,692 - 50,992,734)(50,837,209 - 50,837,730)
sequence
gaattctatagacattcctgtattcatatgcttttttaaaagtcctccat
aagtaggatgacattgggaagtatgctcttctgtgatatcttagcataaa
gttcattagcctctagtctgaattctttcggcatcgtttatggctccaag
aaaaaccagcagcagctacaaaggaaggaaaggagcggtgagctcagaaa
ctcatctcttactcattcggataagaggccttgctcatcacagtgaggtt
ttgacatgcagccacagcagcggtgagttcatctcctagattctctttgt
ccactggaaaaggtccttttcacagaagctctttctgtggttctatcatt
aaattgtaacaaaatctctcatttttcagactcatggaggtacagcttat
aaaaagtggccatatgaggactaaaaattttttaatgagtcatttaacct
tgtgtccaagaagccattcttgttttgaagccatttaagtattatctgtt
aattgtacttacattgtttttgaaaatttgctgaattacatcttttttta
ttttattttatttttttatttatttattatatgtaagtatactgtagctg
tcttcagacactgcagaagagggcgccagatcttgttacggatggttgtg
agccaccatgtggttgctgggatttgaactctggacctttggaagagcag
tcgggtgctcttacccactgagccatctcacgagcccgctgaattatatc
ttatttgatacacaaggattcgttgttcaaatgaccgtataagtgtttca
caaatcatatgcacagtcttagcagcacctgcctcttccagttctctaga
actgcacgggaagcttcctcctagtcataccatgtttagtattccactta
gaaaagaaactttcaacccaaaagagaggatccatttctcatccttaaac
ttaatggtatccaaatgataccagctaccctccgaaagacaagacagtga
acagcagcagaatatttttatttcttaagcgtcttaggcctcgttaaaat
t

tgacgtcaaatagaaatgccagcagctgtgataatcctttaaggagtggc
tggaatggatggcagcccctgatttgttattgtttaaagaaactgtttaa
gaaatacaatacacacatcattagacatttctgtaggtggtgctctttgc
atggaaactgttaagcccccaaacctttgttagtcagtgtctctggggct
tttaaaattcagaaatcaaattcaaatcaagcttcatctccatgaggtgg
tttaatgcgcagaagcaacagattcaatatctgtctgtctgtctgtctgt
ctgtctgtctgtatgtatgtatgtatgtatgtatgtatgtatctgtatcc
atggctactgctcaggtgcacaggaaccgtgagagaacaaatccttgatc
actgtggtggctgaatggctgcgtcgctgctgaaagcaattttctattgt
aaaacccggagtaatagaattcaggaaggtggatgcctagggggttggag
atggatgtgtgtggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_50991692_50992734
seq2: B6Ng01-173B03.b_46_1096 (reverse)

seq1  AATTTTAA-GAGG-CTAAGACGC-TAAGAA--TAAAATATTCTGCTGCTG  45
      |||||||| |||| ||||||||| ||||||   |||||||||||||||||
seq2  AATTTTAACGAGGCCTAAGACGCTTAAGAAATAAAAATATTCTGCTGCTG  50

seq1  TTCACTGTC-TGTCTTTCGGAGGGTAGCTGGTATCATTTGGATACCATTA  94
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTCTTGTCTTTCGGAGGGTAGCTGGTATCATTTGGATACCATTA  100

seq1  AG-TTAAGGATGAGAAATGGATCCTCTCTTTTGGGTTG-AAGTTTCTTTT  142
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTTTAAGGATGAGAAATGGATCCTCTCTTTTGGGTTGAAAGTTTCTTTT  150

seq1  CTAAGTGGAATACTAAACATGGTATGACTAGGAGGAAGCTTCCCGTGCAG  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGGAATACTAAACATGGTATGACTAGGAGGAAGCTTCCCGTGCAG  200

seq1  TTCTAGAGAACTGGAAGAGGCAGGTGCTGCTAAGACTGTGCATATGATTT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGAACTGGAAGAGGCAGGTGCTGCTAAGACTGTGCATATGATTT  250

seq1  GTGAAACACTTATACGGTCATTTGAACAACGAATCCTTGTGTATCAAATA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACACTTATACGGTCATTTGAACAACGAATCCTTGTGTATCAAATA  300

seq1  AGATATAATTCAGCGGGCTCGTGAGATGGCTCAGTGGGTAAGAGCACCCG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAATTCAGCGGGCTCGTGAGATGGCTCAGTGGGTAAGAGCACCCG  350

seq1  ACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGC  400

seq1  TCACAACCATCCGTAACAAGATCTGGCGCCCTCTTCTGCAGTGTCTGAAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCATCCGTAACAAGATCTGGCGCCCTCTTCTGCAGTGTCTGAAG  450

seq1  ACAGCTACAGTATACTTACATATAATAAATAAATAAAAAAATAAAATAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACAGTATACTTACATATAATAAATAAATAAAAAAATAAAATAAA  500

seq1  ATAAAAAAAGATGTAATTCAGCAAATTTTCAAAAACAATGTAAGTACAAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAGATGTAATTCAGCAAATTTTCAAAAACAATGTAAGTACAAT  550

seq1  TAACAGATAATACTTAAATGGCTTCAAAACAAGAATGGCTTCTTGGACAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGATAATACTTAAATGGCTTCAAAACAAGAATGGCTTCTTGGACAC  600

seq1  AAGGTTAAATGACTCATTAAAAAATTTTTAGTCCTCATATGGCCACTTTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAAATGACTCATTAAAAAATTTTTAGTCCTCATATGGCCACTTTT  650

seq1  TATAAGCTGTACCTCCATGAGTCTGAAAAATGAGAGATTTTGTTACAATT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCTGTACCTCCATGAGTCTGAAAAATGAGAGATTTTGTTACAATT  700

seq1  TAATGATAGAACCACAGAAAGAGCTTCTGTGAAAAGGACCTTTTCCAGTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATAGAACCACAGAAAGAGCTTCTGTGAAAAGGACCTTTTCCAGTG  750

seq1  GACAAAGAGAATCTAGGAGATGAACTCACCGCTGCTGTGGCTGCATGTCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGAGAATCTAGGAGATGAACTCACCGCTGCTGTGGCTGCATGTCA  800

seq1  AAACCTCACTGTGATGAGCAAGGCCTCTTATCCGAATGAGTAAGAGATGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCACTGTGATGAGCAAGGCCTCTTATCCGAATGAGTAAGAGATGA  850

seq1  GTTTCTGAGCTCACCGCTCCTTTCCTTCCTTTGTAGCTGCTGCTGGTTTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGAGCTCACCGCTCCTTTCCTTCCTTTGTAGCTGCTGCTGGTTTT  900

seq1  TCTTGGAGCCATAAACGATGCCGAAAGAATTCAGACTAGAGGCTAATGAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGCCATAAACGATGCCGAAAGAATTCAGACTAGAGGCTAATGAA  950

seq1  CTTTATGCTAAGATATCACAGAAGAGCATACTTCCCAATGTCATCCTACT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGCTAAGATATCACAGAAGAGCATACTTCCCAATGTCATCCTACT  1000

seq1  TATGGAGGACTTTTAAAAAAGCATATGAATACAGGAATGTCTATAGAATT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGGACTTTTAAAAAAGCATATGAATACAGGAATGTCTATAGAATT  1050

seq1  C  1043
      |
seq2  C  1051


seq1: chr16_50837209_50837730
seq2: B6Ng01-173B03.g_68_589

seq1  GAATTCTGACGTCAAATAGAAATGCCAGCAGCTGTGATAATCCTTTAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACGTCAAATAGAAATGCCAGCAGCTGTGATAATCCTTTAAGG  50

seq1  AGTGGCTGGAATGGATGGCAGCCCCTGATTTGTTATTGTTTAAAGAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGGAATGGATGGCAGCCCCTGATTTGTTATTGTTTAAAGAAACT  100

seq1  GTTTAAGAAATACAATACACACATCATTAGACATTTCTGTAGGTGGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGAAATACAATACACACATCATTAGACATTTCTGTAGGTGGTGCT  150

seq1  CTTTGCATGGAAACTGTTAAGCCCCCAAACCTTTGTTAGTCAGTGTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCATGGAAACTGTTAAGCCCCCAAACCTTTGTTAGTCAGTGTCTCT  200

seq1  GGGGCTTTTAAAATTCAGAAATCAAATTCAAATCAAGCTTCATCTCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTTTAAAATTCAGAAATCAAATTCAAATCAAGCTTCATCTCCATG  250

seq1  AGGTGGTTTAATGCGCAGAAGCAACAGATTCAATATCTGTCTGTCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTTTAATGCGCAGAAGCAACAGATTCAATATCTGTCTGTCTGTCT  300

seq1  GTCTGTCTGTCTGTCTGTATGTATGTATGTATGTATGTATGTATGTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTGTCTGTCTGTATGTATGTATGTATGTATGTATGTATGTATCT  350

seq1  GTATCCATGGCTACTGCTCAGGTGCACAGGAACCGTGAGAGAACAAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCATGGCTACTGCTCAGGTGCACAGGAACCGTGAGAGAACAAATCC  400

seq1  TTGATCACTGTGGTGGCTGAATGGCTGCGTCGCTGCTGAAAGCAATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCACTGTGGTGGCTGAATGGCTGCGTCGCTGCTGAAAGCAATTTTC  450

seq1  TATTGTAAAACCCGGAGTAATAGAATTCAGGAAGGTGGATGCCTAGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAAAACCCGGAGTAATAGAATTCAGGAAGGTGGATGCCTAGGGGG  500

seq1  TTGGAGATGGATGTGTGTGGGA  522
      ||||||||||||||||||||||
seq2  TTGGAGATGGATGTGTGTGGGA  522


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