BAC Information

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BAC

Clone NameB6Ng01-174G01
Chromosome16 (Build37)
Map Location 75,711,824 - 75,867,876
singlet/doubletdoublet
Overlap geneStch, LOC546667, Samsn1
Upstream geneLOC665042, D930038D03Rik, Rbm11
Downstream gene4930578N18Rik, LOC100039457, Nrip1, LOC100039316, 1700063K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174G01.bB6Ng01-174G01.g
ACCGA002474GA002475
length1,0151,030
definitionB6Ng01-174G01.b B6Ng01-174G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,711,824 - 75,712,842)(75,866,852 - 75,867,876)
sequence
gaattcactagagcattgtatttctgtgagattttcatccgttctacaat
gcctaccaccaccagagcatcataccatggtcatagtaggtgcccagtga
aaactagaagtaaaggtatttaaagaataagcctggatttataaaatgtg
aaaaatgcaagaagaccttctgagaagaggcattctacaagtatgattta
agcaagacttccattgtttcatgttctaagtcaagtgggacttggcacaa
gatctcccattaatgaaagagaaacgttaagagaaattaatgtgtgcagt
tgaagtggaagtttctggacatgtcaggtgatacatgctcacgtgataca
aaatcacgtggtgttttactgaggcaaaacccgtgagaggacaggtaata
tttagggagaatataaataagtctgaatggacagggacggtgcattggca
tagctagctttgcgatgcttcattgttctcatgtcttccctgatctttgt
ttcattgagagaggcatggcagagaactcctcctggcatcccctggcatg
tgatcaggaccactggaggcctggaggtttcttctagatcttgctaacac
tgctgactcgtgcttggtatcctgacattactgggctggactgctggtat
attgacagagattagaattgccccaaagaactacttctaaacaggtccac
accccctggtcctgtttcttatcatttctgcccctgcttttggatgatgg
gctagaatggaggtgcttcaagcatttgagaaccttcatttaaaagtggg
ctttaaaaaaaatctaaatctacaacaatagtataagaaagtcacatgaa
atgcccatacgaatcaactgggtttccctgatgtgtttaagctggctgta
atgagtggtcatatattttaatcaactaactcaaacaaaagtttagtatt
ttaggcctagaagtaaataataatgttggcattggaagagtacttaactt
tctaataattttctt
gaattctgatgacacggtaccatgccgctgagggcttattgttatctaac
cgactttgtgaatcacaccttctacaaccacgctgaaaattaagtgcaca
accttcatgttccttgaatgataaagaccttgattgaatatatgactata
taaaagtgcagcatcattaaaaagaaaaacaaaggcagttcatagtcaga
ctaaaaatagctcttcgaaaagaatgggccacatgaattaccctcctttt
atgcatgtaactgtagagctatcattgaatctgaatagctcagccaggcc
agttaatgcctatgtttttccactgttgggttgaacatttgaagagtttt
ggcttttccggtcattcaatataaaaaaaaaataagcaaactgggcatat
atcttgggtgttaaaaccttgtgataagccctttataaatctttaatata
tcatgagtttgaaaaggagaggcaatagaacagtgtgagcaacagcaatt
tcaaattgacatacaaacaaacaaaaaaccaaaccaaaacaaaaaccaaa
caacttttagattttcttggcccagaaatagataggcagtactgctttca
ctttgacctttaaattgtaaactggattaaatattttagggcactgcgtg
gcaggaggcacaatttttctccagctagctgatagaagggtagttgagag
gtatttgagctgatcacagggtaactgcaggaggacaatgacaactctga
ggttctgcggtcccagcggatcaattcagagggatgcaaaaatcactccc
acatcacatcatcactgagcacaatgagctcattggctctttcacttgga
aatattagataaagttcaagacaaaaggggttgggggctgtgacccagct
cacaggaagaacaaaaatgcaggctctgtttactttgttgcttattaaga
atccctgtagttattgatgggaattttaaaaatgaattacctattgtttt
actattcacttaacatccttctcactgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_75711824_75712842
seq2: B6Ng01-174G01.b_42_1056

seq1  GAATTCACTAGAGCATTGTATTTCTGTGAGATTTTCATCCGTTCTACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGAGCATTGTATTTCTGTGAGATTTTCATCCGTTCTACAAT  50

seq1  GCCTACCACCACCAGAGCATCATACCATGGTCATAGTAGGTGCCCAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCACCACCAGAGCATCATACCATGGTCATAGTAGGTGCCCAGTGA  100

seq1  AAACTAGAAGTAAAGGTATTTAAAGAATAAGCCTGGATTTATAAAATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGAAGTAAAGGTATTTAAAGAATAAGCCTGGATTTATAAAATGTG  150

seq1  AAAAATGCAAGAAGACCTTCTGAGAAGAGGCATTCTACAAGTATGATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCAAGAAGACCTTCTGAGAAGAGGCATTCTACAAGTATGATTTA  200

seq1  AGCAAGACTTCCATTGTTTCATGTTCTAAGTCAAGTGGGACTTGGCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGACTTCCATTGTTTCATGTTCTAAGTCAAGTGGGACTTGGCACAA  250

seq1  GATCTCCCATTAATGAAAGAGAAACGTTAAGAGAAATTAATGTGTGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCCATTAATGAAAGAGAAACGTTAAGAGAAATTAATGTGTGCAGT  300

seq1  TGAAGTGGAAGTTTCTGGACATGTCAGGTGATACATGCTCACGTGATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGAAGTTTCTGGACATGTCAGGTGATACATGCTCACGTGATACA  350

seq1  AAATCACGTGGTGTTTTACTGAGGCAAAACCCGTGAGAGGACAGGTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACGTGGTGTTTTACTGAGGCAAAACCCGTGAGAGGACAGGTAATA  400

seq1  TTTAGGGAGAATATAAATAAGTCTGAATGGACAGGGACGGTGCATTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGAGAATATAAATAAGTCTGAATGGACAGGGACGGTGCATTGGCA  450

seq1  TAGCTAGCTTTGCGATGCTTCATTGTTCTCATGTCTTCCCTGATCTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGCTTTGCGATGCTTCATTGTTCTCATGTCTTCCCTGATCTTTGT  500

seq1  TTCATTGAGAGAGGCATGGCAGAGAACTCCTCCTGGCATCCCCTGGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGAGAGAGGCATGGCAGAGAACTCCTCCTGGCATCCCCTGGCATG  550

seq1  TGATCAGGACCACTGGAGGCCTGGAGGTTTCTTCTAGATCTTGCTAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGGACCACTGGAGGCCTGGAGGTTTCTTCTAGATCTTGCTAACAC  600

seq1  TGCTGACTCGTGCTTGGTATCCTGACATTACTGGGCTGGACTGCTGGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACTCGTGCTTGGTATCCTGACATTACTGGGCTGGACTGCTGGTAT  650

seq1  ATTGACAGAGATTAGAATTGCCCCAAAGAACTACTTCTAAACAGGTCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAGAGATTAGAATTGCCCCAAAGAACTACTTCTAAACAGGTCCAC  700

seq1  ACCCCCTGGTCCTGTTTCTTATCATTTCTGCCCCTGCTTTTGGATGATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTGGTCCTGTTTCTTATCATTTCTGCCCCTGCTTTTGGATGATGG  750

seq1  GCTAGAATGGAGGTGCTTCAAGCATTTGAGAACCTTCA-TTAAAAGTGGG  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTAGAATGGAGGTGCTTCAAGCATTTGAGAACCTTCATTTAAAAGTGGG  800

seq1  CTTTAAAAAAAATCTAAATCTACAACAATAGTATAAGAAAGTCACATGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAAAAATCTAAATCTACAACAATAGTATAAGAAAGTCACATGAA  850

seq1  ATGCCCATACGAATCAACTGGGTTTCCCTGATGTGTTTAAGCTGGCTGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCATACGAATCAACTGGGTTTCCCTGATGTGTTTAAGCTGGCTGTA  900

seq1  ATGAGTGGTCATATATTTTAATCAAACTAACTCAAAACAAAAGTTAAGTA  949
      ||||||||||||||||||||||| ||||||||| ||||||||||| ||||
seq2  ATGAGTGGTCATATATTTTAATC-AACTAACTC-AAACAAAAGTTTAGTA  948

seq1  -TTTAAGCCTAGAAGTAAAATAATAATGTTTGGCATTGGAAGAGTAACTT  998
       |||| |||||||||| ||||||||||| |||||||||||||||| ||||
seq2  TTTTAGGCCTAGAAGT-AAATAATAATG-TTGGCATTGGAAGAGT-ACTT  995

seq1  AAACTTTCTAATTATTTTCTT  1019
       ||||||||||| ||||||||
seq2  -AACTTTCTAATAATTTTCTT  1015

seq1: chr16_75866852_75867876
seq2: B6Ng01-174G01.g_66_1094 (reverse)

seq1  GGCAGTGAGAAGGATGTAAAGTGAATAAGTAAAAACAAATAAGTTAATTC  50
      ||||||||||||||||| |||||||| ||| |||||||   || ||||||
seq2  GGCAGTGAGAAGGATGTTAAGTGAAT-AGT-AAAACAA--TAGGTAATTC  46

seq1  AATTTTTAAAATCCCATC-ATAACTACAGGAATCCTT-ATAAGC-ACAAA  97
      | |||| ||| ||||||| ||||||||||| || ||| |||||| |||||
seq2  ATTTTTAAAATTCCCATCAATAACTACAGGGATTCTTAATAAGCAACAAA  96

seq1  GTAAACAGAGCCTGCATTTTTGTTC-TCCTGTGAGCTGGGTCACAGCCCC  146
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTAAACAGAGCCTGCATTTTTGTTCTTCCTGTGAGCTGGGTCACAGCCCC  146

seq1  --ACCCCTTTTGTCTTGAACTTTATCT-ATATTTCCAAGTGAAAGAGCCA  193
        ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAACCCCTTTTGTCTTGAACTTTATCTAATATTTCCAAGTGAAAGAGCCA  196

seq1  ATGAGCTCATTGTGCTCAGTGATGATGTGATGTGGGAGTGATTTTTGCAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTCATTGTGCTCAGTGATGATGTGATGTGGGAGTGATTTTTGCAT  246

seq1  CCCTCTG-ATTGATCCGCTGGGACCGCAGAACCTCAGAGTTGTCATTGTC  292
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGAATTGATCCGCTGGGACCGCAGAACCTCAGAGTTGTCATTGTC  296

seq1  CTCCTGCAGTTACCCTGTGATCAGCTCAAATACCTCTCAACTACCCTTCT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCAGTTACCCTGTGATCAGCTCAAATACCTCTCAACTACCCTTCT  346

seq1  ATCAGCTAGCTGGAGAAAAATTGTGCCTCCTGCCACGCAGTGCCCTAAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTAGCTGGAGAAAAATTGTGCCTCCTGCCACGCAGTGCCCTAAAA  396

seq1  TATTTAATCCAGTTTACAATTTAAAGGTCAAAGTGAAAGCAGTACTGCCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATCCAGTTTACAATTTAAAGGTCAAAGTGAAAGCAGTACTGCCT  446

seq1  ATCTATTTCTGGGCCAAGAAAATCTAAAAGTTGTTTGGTTTTTGTTTTGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTCTGGGCCAAGAAAATCTAAAAGTTGTTTGGTTTTTGTTTTGG  496

seq1  TTTGGTTTTTTGTTTGTTTGTTTCTCAATTTGAAATTGCTGTTGCTCACA  542
      ||||||||||||||||||||| | ||||||||||||||||||||||||||
seq2  TTTGGTTTTTTGTTTGTTTGTATGTCAATTTGAAATTGCTGTTGCTCACA  546

seq1  CTGTTCTATTGCCTCTCCTTTTCAAACTCATGATATATTAAAGATTTATA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTATTGCCTCTCCTTTTCAAACTCATGATATATTAAAGATTTATA  596

seq1  AAGGGCTTATCACAAGGTTTTAACACCCAAGATATATGCCCAGTTTGCTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTTATCACAAGGTTTTAACACCCAAGATATATGCCCAGTTTGCTT  646

seq1  ATTTTTTTTTTATATTGAATGACCGGAAAAGCCAAAACTCTTCAAATGTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTATATTGAATGACCGGAAAAGCCAAAACTCTTCAAATGTT  696

seq1  CAACCCAACAGTGGAAAAACATAGGCATTAACTGGCCTGGCTGAGCTATT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAACAGTGGAAAAACATAGGCATTAACTGGCCTGGCTGAGCTATT  746

seq1  CAGATTCAATGATAGCTCTACAGTTACATGCATAAAAGGAGGGTAATTCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCAATGATAGCTCTACAGTTACATGCATAAAAGGAGGGTAATTCA  796

seq1  TGTGGCCCATTCTTTTCGAAGAGCTATTTTTAGTCTGACTATGAACTGCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCCATTCTTTTCGAAGAGCTATTTTTAGTCTGACTATGAACTGCC  846

seq1  TTTGTTTTTCTTTTTAATGATGCTGCACTTTTATATAGTCATATATTCAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTCTTTTTAATGATGCTGCACTTTTATATAGTCATATATTCAA  896

seq1  TCAAGGTCTTTATCATTCAAGGAACATGAAGGTTGTGCACTTAATTTTCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTCTTTATCATTCAAGGAACATGAAGGTTGTGCACTTAATTTTCA  946

seq1  GCGTGGTTGTAGAAGGTGTGATTCACAAAGTCGGTTAGATAACAATAAGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGTTGTAGAAGGTGTGATTCACAAAGTCGGTTAGATAACAATAAGC  996

seq1  CCTCAGCGGCATGGTACCGTGTCATCAGAATTC  1025
      |||||||||||||||||||||||||||||||||
seq2  CCTCAGCGGCATGGTACCGTGTCATCAGAATTC  1029