BAC Information

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BAC

Clone NameB6Ng01-174J15
Chromosome16 (Build37)
Map Location 6,413,926 - 6,556,960
singlet/doubletdoublet
Overlap geneA2bp1
Upstream geneLOC100042436, LOC100042445
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174J15.bB6Ng01-174J15.g
ACCGA002640GA002641
length1,022854
definitionB6Ng01-174J15.b B6Ng01-174J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,555,945 - 6,556,960)(6,413,926 - 6,414,773)
sequence
gaattcaaaatttaccctagaggatgtcttttctactaccagaacaaagt
aaatgcatccatccaaacactcacacatggcgcttaacaaagggcattca
tggactttcaatgcaagttgagcggaaaggctagatttcacacaaccacg
gagctgtatgggtgtgagctgggatctaaagcacacagaaacattgaaat
aaagctgttgaactctgtaattcccaagaaagccagtgtgattctctaat
atgatttgaacatcacattcaggagaactgtgtgggattcatacaataga
agcacaacaagacatataagacatcaatggaataacctgaatgctttatc
cagagctgagcttggccctggatacacacaaatggactttatttgtagaa
atcttcagaaattgagaaggggtatattcacagtaaagagaaatggatgt
tggctgctagtaaaggaggctgacagacacagtggctatgcaacgcagct
aaaacagatactagcatctactcctccatctcccaaccaaagacagaggt
gagataagaactcagctttctcagatttcagagttcaaattttcaggcat
tttaagctacaaacattatttgtattttcttcctattaaatattaaatgg
ttcattacaaaaatattgactagcttgacctagccaattctctcctgccc
ttatgaaacctataacaaaaacctcttttttttttttttaaacttaactt
tcaagaaggctgtggaatagggtgaattttatttgacagacatattccct
gctcgagtatgtggtgcacagattaaagcagtgtgtctctcagtggcgga
tcatgaggatacccagctgggccaagatgctacagtccagctgaaagctg
actcctcaaggggaagagtttgctcagggcttgcaagccttgcttcgtca
cacacagtctcaatgcttatcctggcaagctagaaaagggctccagtcct
gctcagggtcacattttgatca

gaattcacttcagcagatcattcacggagctgaaatttctgtctcccatt
gttgaaccatgcattaaatatttatataaaaaagaagagaggaagagcaa
tctgtcacaacagacgttgcagaatcaccgtgcccttcttttctggtgat
ggctgacatccgtgaattaagattaaaaaagagataaagctgaattttgc
tttcacagtttgggggaagatgcttatgaaagcattgctaatgattgcta
ataattacatccaaatcatattacattaagaaattgagatgtgatccagg
ctggggctgtaagatttcacagccacagaccccgcgtctctgctttagta
cattgtcatccaccttgcgagctctagttcttcctcagtgtccaataagt
ggaattattaaaagttggtgggttcagaaatctggaaagaaatgaagtgc
atctgtggatactggcagagtctgtaggaaagcgaggctgagtattgctg
attaatttccatcctctcctggggaagatggagagagaacatcttcactt
ccatgaagtaacttcagtgcaaactgcagcctcgccattggctaaggatt
tcccatcttcactctcaattgatttgtcatgaatcatcccagacagttcc
atttcagggccttgtttttatttgatggggaaggacaacgtagagctaaa
tagattcgtagtctagcatatttttttgtttttaatagtgtagattgttc
tgtttatagtgtccagtactttacagtgttccctaggctgtgtgatgctc
actgtatactttggatcagcttaatcaaatcctttttctggatcaacttt
catg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_6555945_6556960
seq2: B6Ng01-174J15.b_47_1068 (reverse)

seq1  TGATCAAAATGTGACCCTTGAGCAGTACT-GAGCCCTTTTCTAGCTTGCC  49
      ||||||||||||||||| ||||||| ||| ||||||||||||||||||||
seq2  TGATCAAAATGTGACCC-TGAGCAGGACTGGAGCCCTTTTCTAGCTTGCC  49

seq1  AGGATAAGCATTGAGACTGTGTGCTGACG-AGCAA-GCTTGCAAGCCCTG  97
      ||||||||||||||||||||||| ||||| ||||| ||||||||||||||
seq2  AGGATAAGCATTGAGACTGTGTG-TGACGAAGCAAGGCTTGCAAGCCCTG  98

seq1  -GCAAACTCTTCCCCTTGA-GAGTCAGCTTTCAGCTGGACTGTAGCATCT  145
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGCAAACTCTTCCCCTTGAGGAGTCAGCTTTCAGCTGGACTGTAGCATCT  148

seq1  TGG-CCAGCTGGGTATCCTCATGATCCGCCACTGAGAGACACACTGCTTT  194
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAGCTGGGTATCCTCATGATCCGCCACTGAGAGACACACTGCTTT  198

seq1  AATCTGTGCACCACATACTCGAGCAGGGAATATGTCTGTCAAAT-AAATT  243
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATCTGTGCACCACATACTCGAGCAGGGAATATGTCTGTCAAATAAAATT  248

seq1  CACCCTATTCCACAGCCTTCCTGAAAGTTAAGTTTAAAAAAAAAAAAAAG  293
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CACCCTATTCCACAGCCTTCTTGAAAGTTAAGTTTAAAAAAAAAAAAAAG  298

seq1  AGG-TTTTGTTATAGGTTTCATAAGGGCAGGAGAGAATTGGCTAGGTCAA  342
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTGTTATAGGTTTCATAAGGGCAGGAGAGAATTGGCTAGGTCAA  348

seq1  GCTAGTCAATATTTTTGTAATGAACCATTTAATATTTAATAGGAAGAAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCAATATTTTTGTAATGAACCATTTAATATTTAATAGGAAGAAAA  398

seq1  TACAAATAATGTTTGTAGCTTAAAATGCCTGAAAATTTGAACTCTGAAAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAATGTTTGTAGCTTAAAATGCCTGAAAATTTGAACTCTGAAAT  448

seq1  CTGAGAAAGCTGAGTTCTTATCTCACCTCTGTCTTTGGTTGGGAGATGGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAGCTGAGTTCTTATCTCACCTCTGTCTTTGGTTGGGAGATGGA  498

seq1  GGAGTAGATGCTAGTATCTGTTTTAGCTGCGTTGCATAGCCACTGTGTCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGATGCTAGTATCTGTTTTAGCTGCGTTGCATAGCCACTGTGTCT  548

seq1  GTCAGCCTCCTTTACTAGCAGCCAACATCCATTTCTCTTTACTGTGAATA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTCCTTTACTAGCAGCCAACATCCATTTCTCTTTACTGTGAATA  598

seq1  TACCCCTTCTCAATTTCTGAAGATTTCTACAAATAAAGTCCATTTGTGTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTTCTCAATTTCTGAAGATTTCTACAAATAAAGTCCATTTGTGTG  648

seq1  TATCCAGGGCCAAGCTCAGCTCTGGATAAAGCATTCAGGTTATTCCATTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGGGCCAAGCTCAGCTCTGGATAAAGCATTCAGGTTATTCCATTG  698

seq1  ATGTCTTATATGTCTTGTTGTGCTTCTATTGTATGAATCCCACACAGTTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTATATGTCTTGTTGTGCTTCTATTGTATGAATCCCACACAGTTC  748

seq1  TCCTGAATGTGATGTTCAAATCATATTAGAGAATCACACTGGCTTTCTTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATGTGATGTTCAAATCATATTAGAGAATCACACTGGCTTTCTTG  798

seq1  GGAATTACAGAGTTCAACAGCTTTATTTCAATGTTTCTGTGTGCTTTAGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTACAGAGTTCAACAGCTTTATTTCAATGTTTCTGTGTGCTTTAGA  848

seq1  TCCCAGCTCACACCCATACAGCTCCGTGGTTGTGTGAAATCTAGCCTTTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCTCACACCCATACAGCTCCGTGGTTGTGTGAAATCTAGCCTTTC  898

seq1  CGCTCAACTTGCATTGAAAGTCCATGAATGCCCTTTGTTAAGCGCCATGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCAACTTGCATTGAAAGTCCATGAATGCCCTTTGTTAAGCGCCATGT  948

seq1  GTGAGTGTTTGGATGGATGCATTTACTTTGTTCTGGTAGTAGAAAAGACA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTTTGGATGGATGCATTTACTTTGTTCTGGTAGTAGAAAAGACA  998

seq1  TCCTCTAGGGTAAATTTTGAATTC  1016
      ||||||||||||||||||||||||
seq2  TCCTCTAGGGTAAATTTTGAATTC  1022


seq1: chr16_6413926_6414773
seq2: B6Ng01-174J15.g_72_925

seq1  GAATTCACTTCAGCAGATCATTCACGGAGCTGAAATTTCTGTCTCCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCAGCAGATCATTCACGGAGCTGAAATTTCTGTCTCCCATT  50

seq1  GTTGAACCATGCATTAAATATTTATATAAAAAAGAAGAGAGGAAGAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACCATGCATTAAATATTTATATAAAAAAGAAGAGAGGAAGAGCAA  100

seq1  TCTGTCACAACAGACGTTGCAGAATCACCGTGCCCTTCTTTTCTGGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACAACAGACGTTGCAGAATCACCGTGCCCTTCTTTTCTGGTGAT  150

seq1  GGCTGACATCCGTGAATTAAGATTAAAAAAGAGATAAAGCTGAATTTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACATCCGTGAATTAAGATTAAAAAAGAGATAAAGCTGAATTTTGC  200

seq1  TTTCACAGTTTGGGGGAAGATGCTTATGAAAGCATTGCTAATGATTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGTTTGGGGGAAGATGCTTATGAAAGCATTGCTAATGATTGCTA  250

seq1  ATAATTACATCCAAATCATATTACATTAAGAAATTGAGATGTGATCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACATCCAAATCATATTACATTAAGAAATTGAGATGTGATCCAGG  300

seq1  CTGGGGCTGTAAGATTTCACAGCCACAGACCCCGCGTCTCTGCTTTAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCTGTAAGATTTCACAGCCACAGACCCCGCGTCTCTGCTTTAGTA  350

seq1  CATTGTCATCCACCTTGCGAGCTCTAGTTCTTCCTCAGTGTCCAATAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCATCCACCTTGCGAGCTCTAGTTCTTCCTCAGTGTCCAATAAGT  400

seq1  GGAATTATTAAAAGTTGGTGGGTTCAGAAATCTGGAAAGAAATGAAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTATTAAAAGTTGGTGGGTTCAGAAATCTGGAAAGAAATGAAGTGC  450

seq1  ATCTGTGGATACTGGCAGAGTCTGTAGGAAAGCGAGGCTGAGTATTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGATACTGGCAGAGTCTGTAGGAAAGCGAGGCTGAGTATTGCTG  500

seq1  ATTAATTTCCATCCTCTCCTGGGGAAGATGGAGAGAGAACATCTTCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTCCATCCTCTCCTGGGGAAGATGGAGAGAGAACATCTTCACTT  550

seq1  CCATGAAGTAACTTCAGTGCAAACTGCAGCCTCGCCATTGGCTAAGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAGTAACTTCAGTGCAAACTGCAGCCTCGCCATTGGCTAAGGATT  600

seq1  TCCCATCTTCACTCTCAATTGATTTGTCATGAATCATCCCAGACAGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCTTCACTCTCAATTGATTTGTCATGAATCATCCCAGACAGTTCC  650

seq1  ATTTCAGGGCCTTG-TTTTATTTGATGGGGAAGGACAAACGTAGAGCTAA  699
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  ATTTCAGGGCCTTGTTTTTATTTGATGGGGAAGGAC-AACGTAGAGCTAA  699

seq1  ATAGATTCGTAGTCTAGCATATTTTTT--GTTTTAATAGTGTAGATTGTT  747
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  ATAGATTCGTAGTCTAGCATATTTTTTTGTTTTTAATAGTGTAGATTGTT  749

seq1  CTG-TTATAGTGGTCAGTACTTTACAGTGTTCCCTAGGCTGTGTGATGCT  796
      ||| ||||||||  ||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATAGTGTCCAGTACTTTACAGTGTTCCCTAGGCTGTGTGATGCT  799

seq1  CACTGTATAC-TTGGATCAGCTTAATCAAATCC-TTTTCTGTATCAAC-T  843
      |||||||||| |||||||||||||||||||||| ||||||| |||||| |
seq2  CACTGTATACTTTGGATCAGCTTAATCAAATCCTTTTTCTGGATCAACTT  849

seq1  TCATG  848
      |||||
seq2  TCATG  854


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