BAC Information

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BAC

Clone NameB6Ng01-175E14
Chromosome16 (Build37)
Map Location 88,680,446 - 88,681,595
singlet/doubletsinglet
Overlap genenone
Upstream geneBach1, LOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik
Downstream geneEG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175E14.bB6Ng01-175E14.g
ACCGA003129GA003130
length1,1591,207
definitionB6Ng01-175E14.b B6Ng01-175E14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgactgacctggacaataactaagcaaactccacagagaata
agactttagttgcttaaggaaaataagctaaacgaaagggcaagttgagc
atcagtggtaacaggcatctccatggtaacttttaagactgaaaaaaata
aaccaaaggcaagtaagaaattgtgtcttcagtggatagaactggggatt
tcatacacacacacaaaattgatatcactgatgaactacagatatcatca
gcagatatcatgtagttgcactcaaactttttgtaacacttaattgttca
tataaactaaaacaaactggtgattctgggaggagaaaagagcagcttct
caggttgtcaatataacatgtgatttctgcctgctttggagtaagaaaca
cctgaactatgactcctttgatctgttacttggagtgcatataacgtctt
caggtccttatgactccattcctgaattcttatctcatagcaatttttat
aactttaatatgttaagatgattgcaaatattaaatcatggcatgtttta
aatgttaaatatttaaaattcaataaattatatactaacaattcagggat
ggttttctgactgttgttaatgctagtgagaactatgcacggttatggtc
agaatatccaacataaaaatctgtgaagaaaggagatataggatatgcat
gtaactccaattttttttcaaaccttatttttaatgattattcttaaatg
ctttaacctccctacctttaaccagagatagtggaagagaaaggatacgg
gggatgggggaactggacctgtttagaaaggattattttggagcagctcc
catctgtagtgcctggaaattggcagttcagttcacattccacaggttag
caactaacaacagctcgatccattcataaacttcatgggattcattgagg
agtccagtgtggtagagtcaggattagcaagcatgaatcagcagcagagg
tactaccttagcagagacagccaggcctcagcctccacaggagggaatta
aacaggaacctccaggagaagttcttgtctgtgcttctcttcagaccaca
caagcattacccagctagctgtacaggcaagcagctctgttctccattca
ctccctctg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgaagacttatgcccgggccctaaca
aaacacagaagtggatgcttcacagtcagctaatggatgggatcacaggg
cctcccaatggatgagctagaagaaagtatccaaaggagctaagggatct
tcaactcctatagttggaacaacattattgaacttaaccagtacccttga
gcttcttgactctagcttgcatatgtaatcaaaagatgcctagtcggcat
tcacttgaagggaagtccaatgaacacgcagacttggtgaccagtacagg
tacgcctatgttcaaggggagtggaacgtggtcgtgcggtccatcgatgt
cgacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88680446_88681595
seq2: B6Ng01-175E14.b_48_1206 (reverse)

seq1  CAGA-GGAGTG-ATGGAG-ACAGAGCTTGGCTTGCTGGTACAGCTAGCTG  47
      |||| |||||| |||||| ||||||||  ||||||  |||||||||||||
seq2  CAGAGGGAGTGAATGGAGAACAGAGCT--GCTTGCCTGTACAGCTAGCTG  48

seq1  GGTAATGCTTGTGT-GTCTG-AGAGAGGCACAGACAAGAACTTCTCCT-G  94
      |||||||||||||| ||||| ||||| ||||||||||||||||||||| |
seq2  GGTAATGCTTGTGTGGTCTGAAGAGAAGCACAGACAAGAACTTCTCCTGG  98

seq1  AGGTTCCTGTTT-ATTCCCTCCTGTGGAGGCTGAGGCCTGGCTGTCTCTG  143
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCTGTTTAATTCCCTCCTGTGGAGGCTGAGGCCTGGCTGTCTCTG  148

seq1  CT-AGGTAGTACCTCTGCTGCTGATTCATGCTTGCT-ATCCTGACTCTAC  191
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTAAGGTAGTACCTCTGCTGCTGATTCATGCTTGCTAATCCTGACTCTAC  198

seq1  CACACTGGACTCCTC-ATGAAT-CCATGAAGTTTATGAATGGATCGAGCT  239
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  CACACTGGACTCCTCAATGAATCCCATGAAGTTTATGAATGGATCGAGCT  248

seq1  GTTGTTAGTTGCTAACCTGTGGAATGTGAACTGAACTGCCAATTTCCAGG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAGTTGCTAACCTGTGGAATGTGAACTGAACTGCCAATTTCCAGG  298

seq1  CACTACAGATGGGAGCTGCTCCAAAATAATCCTTTCTAAACAGGTCCAGT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGATGGGAGCTGCTCCAAAATAATCCTTTCTAAACAGGTCCAGT  348

seq1  TCCCCCATCCCCCGTATCCTTTCTCTTCCACTATCTCTGGTTAAAGGTAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATCCCCCGTATCCTTTCTCTTCCACTATCTCTGGTTAAAGGTAG  398

seq1  GGAGGTTAAAGCATTTAAGAATAATCATTAAAAATAAGGTTTGAAAAAAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTAAAGCATTTAAGAATAATCATTAAAAATAAGGTTTGAAAAAAA  448

seq1  ATTGGAGTTACATGCATATCCTATATCTCCTTTCTTCACAGATTTTTATG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGTTACATGCATATCCTATATCTCCTTTCTTCACAGATTTTTATG  498

seq1  TTGGATATTCTGACCATAACCGTGCATAGTTCTCACTAGCATTAACAACA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATATTCTGACCATAACCGTGCATAGTTCTCACTAGCATTAACAACA  548

seq1  GTCAGAAAACCATCCCTGAATTGTTAGTATATAATTTATTGAATTTTAAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAAACCATCCCTGAATTGTTAGTATATAATTTATTGAATTTTAAA  598

seq1  TATTTAACATTTAAAACATGCCATGATTTAATATTTGCAATCATCTTAAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACATTTAAAACATGCCATGATTTAATATTTGCAATCATCTTAAC  648

seq1  ATATTAAAGTTATAAAAATTGCTATGAGATAAGAATTCAGGAATGGAGTC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAGTTATAAAAATTGCTATGAGATAAGAATTCAGGAATGGAGTC  698

seq1  ATAAGGACCTGAAGACGTTATATGCACTCCAAGTAACAGATCAAAGGAGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGACCTGAAGACGTTATATGCACTCCAAGTAACAGATCAAAGGAGT  748

seq1  CATAGTTCAGGTGTTTCTTACTCCAAAGCAGGCAGAAATCACATGTTATA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTCAGGTGTTTCTTACTCCAAAGCAGGCAGAAATCACATGTTATA  798

seq1  TTGACAACCTGAGAAGCTGCTCTTTTCTCCTCCCAGAATCACCAGTTTGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAACCTGAGAAGCTGCTCTTTTCTCCTCCCAGAATCACCAGTTTGT  848

seq1  TTTAGTTTATATGAACAATTAAGTGTTACAAAAAGTTTGAGTGCAACTAC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTATATGAACAATTAAGTGTTACAAAAAGTTTGAGTGCAACTAC  898

seq1  ATGATATCTGCTGATGATATCTGTAGTTCATCAGTGATATCAATTTTGTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATCTGCTGATGATATCTGTAGTTCATCAGTGATATCAATTTTGTG  948

seq1  TGTGTGTATGAAATCCCCAGTTCTATCCACTGAAGACACAATTTCTTACT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGAAATCCCCAGTTCTATCCACTGAAGACACAATTTCTTACT  998

seq1  TGCCTTTGGTTTATTTTTTTCAGTCTTAAAAGTTACCATGGAGATGCCTG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGGTTTATTTTTTTCAGTCTTAAAAGTTACCATGGAGATGCCTG  1048

seq1  TTACCACTGATGCTCAACTTGCCCTTTCGTTTAGCTTATTTTCCTTAAGC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACTGATGCTCAACTTGCCCTTTCGTTTAGCTTATTTTCCTTAAGC  1098

seq1  AACTAAAGTCTTATTCTCTGTGGAGTTTGCTTAGTTATTGTCCAGGTCAG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGTCTTATTCTCTGTGGAGTTTGCTTAGTTATTGTCCAGGTCAG  1148

seq1  TCAGAGAATTC  1150
      |||||||||||
seq2  TCAGAGAATTC  1159