BAC Information

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BAC

Clone NameB6Ng01-176B10
Chromosome16 (Build37)
Map Location 88,617,062 - 88,786,094
singlet/doubletdoublet
Overlap gene2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672
Upstream geneBach1, LOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312
Downstream geneEG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176B10.bB6Ng01-176B10.g
ACCGA003721GA003722
length5721,071
definitionB6Ng01-176B10.b B6Ng01-176B10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,617,062 - 88,617,639)(88,785,020 - 88,786,094)
sequence
tactcattaagtaaactaataaaattattatcatttttaatgtcatcata
catagatgtaacataactatactctcaatgttaaatgaaacaaagaagaa
aattcccttatgtatgaaagaaaagtaacttgcttggtagtggggtcact
aaataaccactcacttttcctgtgtcttccatatctttctatattaggca
tcctggaaggtttcagtcattcctttgagtaagatttcaatagtctggtt
tgtaggattacatctctgttgcccagataagtaccaaatatcttgaaatt
gaataaccacatatttaaaatggagttgcatggtgttttatttgtgggtg
gctatgaggataagatgtagtataaatataactaacgtgtagttttattt
ggtgttatatttgatggtgatcattgactgatagcatttgtaaatatctt
tgctaaataatacaatttttattacaagtattgaattttctcaatttatt
ctgtaagtgtagatagatagaaagatagataaatagatagatagatagat
agatagatagatggatggatgg
gaattccctaggctataactgaacctggggaagatacagagattcccagg
agagtcttgtgatcagccttaacacagggggttgctgagaaacttagacc
taatccctgtgtctgtatagggatacaaatatttggaacctttgctcttt
ctcctcagccatcttctgtctaacattttggagaaggaacataaacatga
acaaagtctgagtacatcatatcatgcttttattgtttagaaataaaatc
tagtttttctatataacagagaattcatattttccccttggatatgttaa
ataggattgataaagggaatcatttttcctggtaatttcttatctatggt
tatttactctgtgcttatacagccctggtagcacctaggtctacttagta
tttactaagaacacctgtaaccaattctatgtgtagtaaaaaattcatca
gaggaaaataattattatctcaattattaatatttcataaaataatataa
tttaataatataaattattatttaggaaaaaagtaattgtttgatggccc
tctttagaagatgatcactcgggctcagcagatgaaaggatgtgttgact
cattgcattcactgatgactaaaggaaaactgaaaacgtgcatgcatcat
tccttgccagtagcagaagaaagaatcactgaaggtggactgtaaccaac
cccatgccaggtctataaatatctcagacagacaattaattctgataatc
tgatttcctcatctgctccaaacaaactaaaaaaagatttataaacccct
aacatttttgtcaaattgataataaatctcacaatttcaacaaagtatga
tattcttgttaataatattgtgtaaggtaagaacataggcattcccagat
agggttgagggtgttttttgtagacctgagggagagcatagccagaggca
tatggaagagttcatagtagactgacatggccagcagacttggatttggc
cagagaggaagagagacaaggaagtgagagaggaagagtagagatgatat
gagagagagcatgagagaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88617062_88617639
seq2: B6Ng01-176B10.b_44_621

seq1  GAATTCTACTCATTAAGTAAACTAATAAAATTATTATCATTTTTAATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTCATTAAGTAAACTAATAAAATTATTATCATTTTTAATGTC  50

seq1  ATCATACATAGATGTAACATAACTATACTCTCAATGTTAAATGAAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACATAGATGTAACATAACTATACTCTCAATGTTAAATGAAACAAA  100

seq1  GAAGAAAATTCCCTTATGTATGAAAGAAAAGTAACTTGCTTGGTAGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAATTCCCTTATGTATGAAAGAAAAGTAACTTGCTTGGTAGTGGG  150

seq1  GTCACTAAATAACCACTCACTTTTCCTGTGTCTTCCATATCTTTCTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAAATAACCACTCACTTTTCCTGTGTCTTCCATATCTTTCTATAT  200

seq1  TAGGCATCCTGGAAGGTTTCAGTCATTCCTTTGAGTAAGATTTCAATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATCCTGGAAGGTTTCAGTCATTCCTTTGAGTAAGATTTCAATAGT  250

seq1  CTGGTTTGTAGGATTACATCTCTGTTGCCCAGATAAGTACCAAATATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGTAGGATTACATCTCTGTTGCCCAGATAAGTACCAAATATCTT  300

seq1  GAAATTGAATAACCACATATTTAAAATGGAGTTGCATGGTGTTTTATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGAATAACCACATATTTAAAATGGAGTTGCATGGTGTTTTATTTG  350

seq1  TGGGTGGCTATGAGGATAAGATGTAGTATAAATATAACTAACGTGTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGCTATGAGGATAAGATGTAGTATAAATATAACTAACGTGTAGTT  400

seq1  TTATTTGGTGTTATATTTGATGGTGATCATTGACTGATAGCATTTGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGGTGTTATATTTGATGGTGATCATTGACTGATAGCATTTGTAAA  450

seq1  TATCTTTGCTAAATAATACAATTTTTATTACAAGTATTGAATTTTCTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGCTAAATAATACAATTTTTATTACAAGTATTGAATTTTCTCAA  500

seq1  TTTATTCTGTAAGTGTAGATAGATAGAAAGATAGATAAATAGATAGATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTGTAAGTGTAGATAGATAGAAAGATAGATAAATAGATAGATAG  550

seq1  ATAGATAGATAGATAGATGGATGGATGG  578
      ||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATGGATGGATGG  578

seq1: chr16_88785020_88786094
seq2: B6Ng01-176B10.g_66_1136 (reverse)

seq1  CCCTCTCTCTTGCCTCTCTCTCATAATCATCTCTTCCTCTTCCTCTCTCA  50
      ||||||||| || ||||||||||| |||||||| | ||||||||||||||
seq2  CCCTCTCTCATG-CTCTCTCTCAT-ATCATCTC-TACTCTTCCTCTCTCA  47

seq1  CTCTCCTTGTCTCTCTTTCTTCTCTTGGCCAAATCC-AGTCTGCTGGCCA  99
      || |||||||||||| ||| |||| ||||||||||| |||||||||||||
seq2  CT-TCCTTGTCTCTC-TTCCTCTC-TGGCCAAATCCAAGTCTGCTGGCCA  94

seq1  TGTTCAGTCTACTATGGACTC-TCCATATGCCTCTGGCTATGCTCTCCCT  148
      || ||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  TG-TCAGTCTACTATGAACTCTTCCATATGCCTCTGGCTATGCTCTCCCT  143

seq1  CAGGTCTAC-AAAAACACCCTCAACCCTATCTGGGAATGCCTATGTTCTT  197
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTACAAAAAACACCCTCAACCCTATCTGGGAATGCCTATGTTCTT  193

seq1  ACCTTACACAATATTATTAACAAGAATATCATACTTTGTTGAAATTGTGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACACAATATTATTAACAAGAATATCATACTTTGTTGAAATTGTGA  243

seq1  GATTTATTATCAATTTGACAAAAATGTTAGGGGTTTATAAATCTTTTTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTATCAATTTGACAAAAATGTTAGGGGTTTATAAATCTTTTTTT  293

seq1  AGTTTGTTTGGAGCAGATGAGGAAATCAGATTATCAGAATTAATTGTCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTTGGAGCAGATGAGGAAATCAGATTATCAGAATTAATTGTCTG  343

seq1  TCTGAGATATTTATAGACCTGGCATGGGGTTGGTTACAGTCCACCTTCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATATTTATAGACCTGGCATGGGGTTGGTTACAGTCCACCTTCAG  393

seq1  TGATTCTTTCTTCTGCTACTGGCAAGGAATGATGCATGCACGTTTTCAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTTCTTCTGCTACTGGCAAGGAATGATGCATGCACGTTTTCAGT  443

seq1  TTTCCTTTAGTCATCAGTGAATGCAATGAGTCAACACATCCTTTCATCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTAGTCATCAGTGAATGCAATGAGTCAACACATCCTTTCATCTG  493

seq1  CTGAGCCCGAGTGATCATCTTCTAAAGAGGGCCATCAAACAATTACTTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCGAGTGATCATCTTCTAAAGAGGGCCATCAAACAATTACTTTT  543

seq1  TTCCTAAATAATAATTTATATTATTAAATTATATTATTTTATGAAATATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAATAATAATTTATATTATTAAATTATATTATTTTATGAAATATT  593

seq1  AATAATTGAGATAATAATTATTTTCCTCTGATGAATTTTTTACTACACAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTGAGATAATAATTATTTTCCTCTGATGAATTTTTTACTACACAT  643

seq1  AGAATTGGTTACAGGTGTTCTTAGTAAATACTAAGTAGACCTAGGTGCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGGTTACAGGTGTTCTTAGTAAATACTAAGTAGACCTAGGTGCTA  693

seq1  CCAGGGCTGTATAAGCACAGAGTAAATAACCATAGATAAGAAATTACCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTGTATAAGCACAGAGTAAATAACCATAGATAAGAAATTACCAG  743

seq1  GAAAAATGATTCCCTTTATCAATCCTATTTAACATATCCAAGGGGAAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGATTCCCTTTATCAATCCTATTTAACATATCCAAGGGGAAAAT  793

seq1  ATGAATTCTCTGTTATATAGAAAAACTAGATTTTATTTCTAAACAATAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTCTCTGTTATATAGAAAAACTAGATTTTATTTCTAAACAATAAA  843

seq1  AGCATGATATGATGTACTCAGACTTTGTTCATGTTTATGTTCCTTCTCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGATATGATGTACTCAGACTTTGTTCATGTTTATGTTCCTTCTCCA  893

seq1  AAATGTTAGACAGAAGATGGCTGAGGAGAAAGAGCAAAGGTTCCAAATAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAGACAGAAGATGGCTGAGGAGAAAGAGCAAAGGTTCCAAATAT  943

seq1  TTGTATCCCTATACAGACACAGGGATTAGGTCTAAGTTTCTCAGCAACCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCCCTATACAGACACAGGGATTAGGTCTAAGTTTCTCAGCAACCC  993

seq1  CCTGTGTTAAGGCTGATCACAAGACTCTCCTGGGAATCTCTGTATCTTCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTAAGGCTGATCACAAGACTCTCCTGGGAATCTCTGTATCTTCC  1043

seq1  CCAGGTTCAGTTATAGCCTAGGGAATTC  1075
      ||||||||||||||||||||||||||||
seq2  CCAGGTTCAGTTATAGCCTAGGGAATTC  1071