BAC Information

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BAC

Clone NameB6Ng01-176J06
Chromosome16 (Build37)
Map Location 87,580,783 - 87,741,751
singlet/doubletdoublet
Overlap geneORF63, Bach1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486
Downstream geneLOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176J06.bB6Ng01-176J06.g
ACCGA004079GA004080
length1,2101,087
definitionB6Ng01-176J06.b B6Ng01-176J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,740,550 - 87,741,751)(87,580,783 - 87,581,892)
sequence
gaattccattcacttctgcttggtctcaagaccctgggatcagccccagg
aatggcatgttgtttagcccttcttcatgggcctcatagttttttgtgct
gttcatgcctcttgttgtggcaagccatcaacgaaggaggcactgacact
ctgctgagccacggagaggcaccttgtaactgacatctggcaatggccac
tccacccagcctcttccctgtacaaacagagactttgtcccttgtcatga
aggcaggtgctttatatggctttagactggctgacccttggggcacactt
atagttcaccccaacatgggcccctccatagaggccaagaacgataggac
aggctgcttctctgtgtctctccctctgcatgttttcacgggcagttctg
ccagtccctctgccattacatttctcaaaggagaaagaggctatctggct
tggtagagacctacttctcaaaccacctatcagaagagctaaggagatgg
ctcagcaggtaagagtgctgcaatcacaaggacctgagttcaaatcccca
gcagtcacatctaggcataactccatgcctggagaaggaggaatgggaga
gacaggcagatccagaccctacaagctcctttgccagacagccaatctga
gacactgagtttccagttcaatgagaaagcctgtctcaatggaatcagga
gacaatagaatggaacggagagtaatagtggaagacacccgacattgtcc
cctggcctcgtcacaataaaggaggatactctaggtcctcctctgatctc
catttatgcatacatgaacatgtgtacatacacacatgcgtacaaaacag
agacatacacatgttattgtgcacatgcataatacatacacagcatactt
tgatatacacatacatgccatgctttgcacatgtgcacttttcaaacaca
cacaacactcacacatcgcaataccagcttcacctcaaaaaaacaggagc
tcactttaaagtcatgaagctcgcaggataatagcaaagagttagatcct
cagacttcccgcccctagaacagccacctctattgaggggctcctgggga
ggggtctctcttgatatttactccacagttacctcgctacacgaggactt
ccctttaacgaattgatctctgaacacaccatggttcgcctatattgtgc
ctgtggggag
gaattctttttcacgttgtatttagaaaattttgccaaatggacctgttc
ttctcttcgatgggaggaaagaagaaactcaaatctgttcttctgctctc
tgttcaacctcacgtgtcacaagcagggtgtggggggctggttttctcta
ccagtttgttaattctgccagcacattctccagcctcacaccctgtctct
tgcatcgagcacacctctcagaagggggcctttgtctgcaccgctctgat
gtgcttgtgcctctggaccatgaagtagacagaaaagggagataaaaatc
ccttccactgacctttcgtaaagcagtttgcaatttccgaggaggagcaa
aagttaatgggaaatgtatttttcatccacacatagtaggtaactgacat
gtagtactatgtctcagggccccggttcagggctgaggtgctcatgaaag
tcacaggacagtccatgtcagcgcgaccgtctcacaactctgtgtccccc
aaacagaagaagcccggctctgtgccacggttgatccagagcactgcttc
ctgacaatgggatggactcatggcttctctttctttgtgcagcctctgcc
gccgtgtcacgactccgtagagtccatgcaggtgtttaaacagcactgcc
aaatagcagaagagtaccatgaagtcaaaaaagagatcgccttgcttgag
gaaaggaagtaagtatcttcccgcctgcgctcctactgagtgcctgttct
cctactgagcggacactggcgtgggcccggagggaccgggttttaggaag
gagcaacagaccttctgcagacctagtgggttttacctgggccctaggaa
aaaggtctgtgggtgtgcttcctctcaaagctcattatctatcatctatc
tatctatctatctatctatctatctatctatcatctatctggatattttc
tttatttacattcaaatgtttccctttcagtctcccctcagaacccctat
tcatcccccttcccctgctcatgaggtgctcttcacccactaaccactcc
gtctccggcatggcatccttaactgggcattgaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_87740550_87741751
seq2: B6Ng01-176J06.b_42_1251 (reverse)

seq1  CTCCCCAC--GCAC-ATATAGGCGAACCCATGGTGTGTCAGGAGTCCAAA  47
      ||||||||  |||| ||||||||||| |||||||||||   |||  | ||
seq2  CTCCCCACAGGCACAATATAGGCGAA-CCATGGTGTGTTCAGAGATC-AA  48

seq1  TTCGTT-AAGGGAGTCCCTCTGTGTAGCGAG--TACTGTGGAGT-AATAT  93
      |||||| ||||||   |||| ||||||||||   |||||||||| |||||
seq2  TTCGTTAAAGGGAAGTCCTC-GTGTAGCGAGGTAACTGTGGAGTAAATAT  97

seq1  CAAGAAGAGACCCCCTCCCAGGAGCCCCTC-ATAGAGGTGGGCTTGTCTA  142
      |||| |||||||||  |||||||||||||| |||||||| ||||  ||||
seq2  CAAG-AGAGACCCCTCCCCAGGAGCCCCTCAATAGAGGT-GGCTGTTCTA  145

seq1  GGGGCGGGAAAGTCTGA-GATCTTACTCTTTGCTATATTCCTGCGAGCTT  191
      |||||||| |||||||| ||||| ||||||||||||  ||||||||||||
seq2  GGGGCGGG-AAGTCTGAGGATCTAACTCTTTGCTATTATCCTGCGAGCTT  194

seq1  CATGACTTT-AAGTGAGCCTCCTG-TTTTTTGA-GTGAAGCTGGTA-TGC  237
      ||||||||| ||||||| |||||| |||||||| |||||||||||| |||
seq2  CATGACTTTAAAGTGAG-CTCCTGTTTTTTTGAGGTGAAGCTGGTATTGC  243

seq1  GATGTGTGAGTG-TGTGTGTGTTTG-AAAGTGCACATGTGCAAAGCATGG  285
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  GATGTGTGAGTGTTGTGTGTGTTTGAAAAGTGCACATGTGCAAAGCATGG  293

seq1  CATGTATGTGTATATCAAAGTATGCTGTGTATGTATTATGCATGTGCACA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGTGTATATCAAAGTATGCTGTGTATGTATTATGCATGTGCACA  343

seq1  ATAACATGTGTATGTCTCTGTTTTGTACGCATGTGTGTATGTACACATGT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGTGTATGTCTCTGTTTTGTACGCATGTGTGTATGTACACATGT  393

seq1  TCATGTATGCATAAATGGAGATCAGAGGAGGACCTAGAGTATCCTCCTTT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTATGCATAAATGGAGATCAGAGGAGGACCTAGAGTATCCTCCTTT  443

seq1  ATTGTGACGAGGCCAGGGGACAATGTCGGGTGTCTTCCACTATTACTCTC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGACGAGGCCAGGGGACAATGTCGGGTGTCTTCCACTATTACTCTC  493

seq1  CGTTCCATTCTATTGTCTCCTGATTCCATTGAGACAGGCTTTCTCATTGA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCATTCTATTGTCTCCTGATTCCATTGAGACAGGCTTTCTCATTGA  543

seq1  ACTGGAAACTCAGTGTCTCAGATTGGCTGTCTGGCAAAGGAGCTTGTAGG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAACTCAGTGTCTCAGATTGGCTGTCTGGCAAAGGAGCTTGTAGG  593

seq1  GTCTGGATCTGCCTGTCTCTCCCATTCCTCCTTCTCCAGGCATGGAGTTA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGATCTGCCTGTCTCTCCCATTCCTCCTTCTCCAGGCATGGAGTTA  643

seq1  TGCCTAGATGTGACTGCTGGGGATTTGAACTCAGGTCCTTGTGATTGCAG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGATGTGACTGCTGGGGATTTGAACTCAGGTCCTTGTGATTGCAG  693

seq1  CACTCTTACCTGCTGAGCCATCTCCTTAGCTCTTCTGATAGGTGGTTTGA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTACCTGCTGAGCCATCTCCTTAGCTCTTCTGATAGGTGGTTTGA  743

seq1  GAAGTAGGTCTCTACCAAGCCAGATAGCCTCTTTCTCCTTTGAGAAATGT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGGTCTCTACCAAGCCAGATAGCCTCTTTCTCCTTTGAGAAATGT  793

seq1  AATGGCAGAGGGACTGGCAGAACTGCCCGTGAAAACATGCAGAGGGAGAG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGAGGGACTGGCAGAACTGCCCGTGAAAACATGCAGAGGGAGAG  843

seq1  ACACAGAGAAGCAGCCTGTCCTATCGTTCTTGGCCTCTATGGAGGGGCCC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAGCAGCCTGTCCTATCGTTCTTGGCCTCTATGGAGGGGCCC  893

seq1  ATGTTGGGGTGAACTATAAGTGTGCCCCAAGGGTCAGCCAGTCTAAAGCC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGGGTGAACTATAAGTGTGCCCCAAGGGTCAGCCAGTCTAAAGCC  943

seq1  ATATAAAGCACCTGCCTTCATGACAAGGGACAAAGTCTCTGTTTGTACAG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGCACCTGCCTTCATGACAAGGGACAAAGTCTCTGTTTGTACAG  993

seq1  GGAAGAGGCTGGGTGGAGTGGCCATTGCCAGATGTCAGTTACAAGGTGCC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGCTGGGTGGAGTGGCCATTGCCAGATGTCAGTTACAAGGTGCC  1043

seq1  TCTCCGTGGCTCAGCAGAGTGTCAGTGCCTCCTTCGTTGATGGCTTGCCA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGTGGCTCAGCAGAGTGTCAGTGCCTCCTTCGTTGATGGCTTGCCA  1093

seq1  CAACAAGAGGCATGAACAGCACAAAAAACTATGAGGCCCATGAAGAAGGG  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGAGGCATGAACAGCACAAAAAACTATGAGGCCCATGAAGAAGGG  1143

seq1  CTAAACAACATGCCATTCCTGGGGCTGATCCCAGGGTCTTGAGACCAAGC  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAACATGCCATTCCTGGGGCTGATCCCAGGGTCTTGAGACCAAGC  1193

seq1  AGAAGTGAATGGAATTC  1202
      |||||||||||||||||
seq2  AGAAGTGAATGGAATTC  1210

seq1: chr16_87580783_87581892
seq2: B6Ng01-176J06.g_63_1149

seq1  GAATTCTTTTTCACGTTGTATTTAGAAAATTTTGCCAAATGGACCTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCACGTTGTATTTAGAAAATTTTGCCAAATGGACCTGTTC  50

seq1  TTCTCTTCGATGGGAGGAAAGAAGAAACTCAAATCTGTTCTTCTGCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCGATGGGAGGAAAGAAGAAACTCAAATCTGTTCTTCTGCTCTC  100

seq1  TGTTCAACCTCACGTGTCACAAGCAGGGTGTGGGGGGCTGGTTTTCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACCTCACGTGTCACAAGCAGGGTGTGGGGGGCTGGTTTTCTCTA  150

seq1  CCAGTTTGTTAATTCTGCCAGCACATTCTCCAGCCTCACACCCTGTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTGTTAATTCTGCCAGCACATTCTCCAGCCTCACACCCTGTCTCT  200

seq1  TGCATCGAGCACACCTCTCAGAAGGGGGCCTTTGTCTGCACCGCTCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCGAGCACACCTCTCAGAAGGGGGCCTTTGTCTGCACCGCTCTGAT  250

seq1  GTGCTTGTGCCTCTGGACCATGAAGTAGACAGAAAAGGGAGATAAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGTGCCTCTGGACCATGAAGTAGACAGAAAAGGGAGATAAAAATC  300

seq1  CCTTCCACTGACCTTTCGTAAAGCAGTTTGCAATTTCCGAGGAGGAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCACTGACCTTTCGTAAAGCAGTTTGCAATTTCCGAGGAGGAGCAA  350

seq1  AAGTTAATGGGAAATGTATTTTTCATCCACACATAGTAGGTAACTGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATGGGAAATGTATTTTTCATCCACACATAGTAGGTAACTGACAT  400

seq1  GTAGTACTATGTCTCAGGGCCCCGGTTCAGGGCTGAGGTGCTCATGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTACTATGTCTCAGGGCCCCGGTTCAGGGCTGAGGTGCTCATGAAAG  450

seq1  TCACAGGACAGTCCATGTCAGCGCGACCGTCTCACAACTCTGTGTCCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGACAGTCCATGTCAGCGCGACCGTCTCACAACTCTGTGTCCCCC  500

seq1  AAACAGAAGAAGCCCGGCTCTGTGCCACGGTTGATCCAGAGCACTGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAGAAGCCCGGCTCTGTGCCACGGTTGATCCAGAGCACTGCTTC  550

seq1  CTGACAATGGGATGGACTCATGGCTTCTCTTTCTTTGTGCAGCCTCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAATGGGATGGACTCATGGCTTCTCTTTCTTTGTGCAGCCTCTGCC  600

seq1  GCCGTGTCACGACTCCGTAGAGTCCATGCAGGTGTTTAAACAGCACTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGTCACGACTCCGTAGAGTCCATGCAGGTGTTTAAACAGCACTGCC  650

seq1  AAATAGCAGAAGAGTACCATGAAGTCAAAAAAGAGATCGCCTTGCTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCAGAAGAGTACCATGAAGTCAAAAAAGAGATCGCCTTGCTTGAG  700

seq1  GAAAGGAAGTAAGTATCTTCCCGCCTGCGCTCCTACTGAGTGCCTGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAGTAAGTATCTTCCCGCCTGCGCTCCTACTGAGTGCCTGTTCT  750

seq1  CCTACTGAGCGGACACTGGCGTGGGCCCGGAGGGACCGGGTTTTAGGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGAGCGGACACTGGCGTGGGCCCGGAGGGACCGGGTTTTAGGAAG  800

seq1  GAGCAACAGACCTTCTGCAGACCTAGT-GGTTTTACCTGGGCCCTAGGAA  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGCAACAGACCTTCTGCAGACCTAGTGGGTTTTACCTGGGCCCTAGGAA  850

seq1  AAAGGTCTGTGGGTGTGCTTCCTCTCAAAGCTCATTATCTATCTATCTAT  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAAGGTCTGTGGGTGTGCTTCCTCTCAAAGCTCATTATCTATC-ATCTAT  899

seq1  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTTGGATATT  949
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  CTATCTATCTATCTATCTATCTATCTATCTATC-ATCTATC-TGGATATT  947

seq1  TTCTTTATTTACATTTCAAATGTTTCCCCTTTTCAGGTCTCCCCTTCAGA  999
      ||||||||||||| ||||||||||||||  ||||| |||||||| |||||
seq2  TTCTTTATTTACA-TTCAAATGTTTCCC--TTTCA-GTCTCCCC-TCAGA  992

seq1  AACCCCCTATTCCATCCCCCCTCCCCCTGCCTCCATGAGGGTGCTCCTTC  1049
      |  |||||||| ||| |||||| |||||||   ||||| |||||| ||||
seq2  A--CCCCTATT-CAT-CCCCCTTCCCCTGC--TCATGA-GGTGCT-CTTC  1034

seq1  ACCCACTCACCCACTCCCGTCCTCCCGCCCTGGCATTCCCCTACACTGGG  1099
      ||||||| | ||||| |||||   ||| | ||||||   |||  ||| ||
seq2  ACCCACT-AACCACT-CCGTC--TCCGGCATGGCAT---CCTTAACT-GG  1076

seq1  GCATTGAATAC  1110
      |||||||||||
seq2  GCATTGAATAC  1087