BAC Information

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BAC

Clone NameB6Ng01-176P24
Chromosome16 (Build37)
Map Location 63,666,497 - 63,807,997
singlet/doubletdoublet
Overlap geneEpha3
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneLOC100043540, Ckt2, 4930453N24Rik, Zfp654, LOC433036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176P24.bB6Ng01-176P24.g
ACCGA004389GA004390
length1,1301,092
definitionB6Ng01-176P24.b B6Ng01-176P24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,666,497 - 63,667,619)(63,806,896 - 63,807,997)
sequence
gaattctaacaaaattctaggcttgtatgtaaagcaattttaaccactag
agatattgtgaacagactcactctgcaggatgtacttgggatttaagcga
gcagaagacaacacatttgcctatctaggcgtcataaacctgggagcagc
aggccagctccataaataactttccatcaagaaacttagggacatttatg
gaagggctttaatttaacagcagtcttcctgctcatctgtgaactgcact
tcattcctgtagtacagcatcccacctcactcagtcatatattgactatg
taaagattccgttttcttcatgtgcatgtatttatacttcgaaacctgct
ccctggtccatgctagtttcaggggctggtattgtcccttctgcttccct
acagtttatttattttgctccatctttctatttcatttaaggttccttag
actaggaacaagcaggaaacaagtataatattttgccgctgaaagaatag
ctaatataaaaaagtgctgcaccccctcatcttccataactgatgtcaca
acgagatgtttcttagtgcacagactgttctagttgtttagaactgtagc
ttctttactcagttgtgtgttttccaataggaagaagaggctccttccat
ctctccctgatacacatgactagctgaatactgttacacggtgaaggaat
ccctctcatcataaacccagaggatgaggcagatagacaaaacagcagac
cttctcccccttcgcacacatgacttatttgctttcacaacagcagactt
caagggcaagatgttcttgggtcaattcatatgttaagaatgtgcttctg
acaatatttaaatccatgcacattgtagatataatgacatctgggaacag
tgtcattggaccagccagtgaaataaaagcaatcagacatctaccctttt
acatgggaagtacctctcaatcccttccgtgatcaactcttatagatatg
aggttatgctttcagcagctatagtgatagtggttattacttggagaatt
ctttttttttattgtaacctatagggcagtagaccatctatcataaagaa
ggttattcatcctgtttagaaacaatattt

gaattcattattatgtaaggttaagttatatggttggctgcttgttttca
gggtcattcaaattaagcacatttctgaaatttcatgatgttgacatttt
gaaaagcaagttttttactcttcataacaatttttcaatcagtatgttct
gatacttttgctcagcctagatataagaataatattttgaagatatttaa
catgaaaggagcttatcataccaaggacatgcatttgcatattggtacat
attagccttgataatacgtgagatctatgaagcgccaatgctatgaaagt
tgtttcaaaagctttaagcagccaaagagtgaactgaattttgggaggtt
tacctacttcaatggtaaaccttctgtcccttttcataacatataaagtg
tgtacaccatgttttggaaattcctctttccattggaagccaacctttgc
agttctggagcaaaggtccaatattgatagctacagtacaaattagtcct
caaatggtgtaagcatcactagacagcactgaaacctgagctgttcacag
cagctatgtgttctgatgaaaaatgtggtaggcagtgagtgagataggtt
tcttcctatgatgacacaaatcaaagcttaattttgatcttcttgttaat
gaatatggtgggagataatatgacacaattggtttccaattggcatagtt
tttaaagaattgatgaataagatatgaatgaagaggtaagcacgtttgtt
tattcctgtccaaatcagaatatatctttggatcatgttttctaaatgcc
ttattgttttttttttttttttttttacaatgtgatttttttcccccacc
tgccatttctttagaaaagtctgttattagggctaggttccttagggtct
tctctggcttcagtgagattcttttgtaggagaacatggatgaaaaacac
acatatcacaaaagccaaggcttatcttgactttggactctactttagga
tggtagactgaggttcaatgccacctcatagagagctgttgttgataggc
tttcctggggtgtatatctgaccaatacttggctactactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_63666497_63667619
seq2: B6Ng01-176P24.b_45_1174

seq1  GAATTCTAACAAAATTCTAGGCTTGTATGTAAAGCAATTTTAACCACTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACAAAATTCTAGGCTTGTATGTAAAGCAATTTTAACCACTAG  50

seq1  AGATATTGTGAACAGACTCACTCTGCAGGATGTACTTGGGATTTAAGCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTGTGAACAGACTCACTCTGCAGGATGTACTTGGGATTTAAGCGA  100

seq1  GCAGAAGACAACACATTTGCCTATCTAGGCGTCATAAACCTGGGAGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGACAACACATTTGCCTATCTAGGCGTCATAAACCTGGGAGCAGC  150

seq1  AGGCCAGCTCCATAAATAACTTTCCATCAAGAAACTTAGGGACATTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCTCCATAAATAACTTTCCATCAAGAAACTTAGGGACATTTATG  200

seq1  GAAGGGCTTTAATTTAACAGCAGTCTTCCTGCTCATCTGTGAACTGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCTTTAATTTAACAGCAGTCTTCCTGCTCATCTGTGAACTGCACT  250

seq1  TCATTCCTGTAGTACAGCATCCCACCTCACTCAGTCATATATTGACTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTGTAGTACAGCATCCCACCTCACTCAGTCATATATTGACTATG  300

seq1  TAAAGATTCCGTTTTCTTCATGTGCATGTATTTATACTTCGAAACCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTCCGTTTTCTTCATGTGCATGTATTTATACTTCGAAACCTGCT  350

seq1  CCCTGGTCCATGCTAGTTTCAGGGGCTGGTATTGTCCCTTCTGCTTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTCCATGCTAGTTTCAGGGGCTGGTATTGTCCCTTCTGCTTCCCT  400

seq1  ACAGTTTATTTATTTTGCTCCATCTTTCTATTTCATTTAAGGTTCCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTATTTATTTTGCTCCATCTTTCTATTTCATTTAAGGTTCCTTAG  450

seq1  ACTAGGAACAAGCAGGAAACAAGTATAATATTTTGCCGCTGAAAGAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAACAAGCAGGAAACAAGTATAATATTTTGCCGCTGAAAGAATAG  500

seq1  CTAATATAAAAAAGTGCTGCACCCCCTCATCTTCCATAACTGATGTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATAAAAAAGTGCTGCACCCCCTCATCTTCCATAACTGATGTCACA  550

seq1  ACGAGATGTTTCTTAGTGCACAGACTGTTCTAGTTGTTTAGAACTGTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGATGTTTCTTAGTGCACAGACTGTTCTAGTTGTTTAGAACTGTAGC  600

seq1  TTCTTTACTCAGTTGTGTGTTTTCCAATAGGAAGAAGAGGCTCCTTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACTCAGTTGTGTGTTTTCCAATAGGAAGAAGAGGCTCCTTCCAT  650

seq1  CTCTCCCTGATACACATGACTAGCTGAATACTGTTACACGGTGAAGGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTGATACACATGACTAGCTGAATACTGTTACACGGTGAAGGAAT  700

seq1  CCCTCTCATCATAAACCCAGAGGATGAGGCAGATAGACAAAACAGCAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCATCATAAACCCAGAGGATGAGGCAGATAGACAAAACAGCAGAC  750

seq1  CTTCTCCCCCTTCGCACACATGACTTATTTGCTTTCACAACAGCAGACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCCCTTCGCACACATGACTTATTTGCTTTCACAACAGCAGACTT  800

seq1  CAAGGGCAAGATGTTCTTGGGTCAATTCATATGTTAAGAATGTGCTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCAAGATGTTCTTGGGTCAATTCATATGTTAAGAATGTGCTTCTG  850

seq1  ACAATATTTAAATCCATGCACATTGTAGATATAATGACATCTGGGAACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTTAAATCCATGCACATTGTAGATATAATGACATCTGGGAACAG  900

seq1  TGTCATTGGACCAGCCAGTGAAATAAAAGCAATCAGACATCTACCC-TTT  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTCATTGGACCAGCCAGTGAAATAAAAGCAATCAGACATCTACCCTTTT  950

seq1  ACAT-GGAAGTACCTCTCAAT-CCTTCCGTGATCAACTCTTATAGATATG  997
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACATGGGAAGTACCTCTCAATCCCTTCCGTGATCAACTCTTATAGATATG  1000

seq1  AGGTTATGCTTTCAGCAGCTATAGTGATAGTGG-TATTACTTGAGAAATT  1046
      ||||||||||||||||||||||||||||||||| |||||||||   ||||
seq2  AGGTTATGCTTTCAGCAGCTATAGTGATAGTGGTTATTACTTGGAGAATT  1050

seq1  C--TTTTTTTATGTTAAACTATA-GGCAGTTAGAACAACCAACCATAAAG  1093
      |  |||||||||  ||| ||||| ||||| ||| || | | | |||||||
seq2  CTTTTTTTTTATTGTAACCTATAGGGCAG-TAG-ACCATCTATCATAAAG  1098

seq1  AAAGTTATTCAT-CTG-TTAGAAACAATATTT  1123
      || ||||||||| ||| |||||||||||||||
seq2  AAGGTTATTCATCCTGTTTAGAAACAATATTT  1130


seq1: chr16_63806896_63807997
seq2: B6Ng01-176P24.g_66_1157 (reverse)

seq1  TCAGTAGTAGCAAGGTTATATTGTCAGATATACACCCAGGGAAAGCCTTA  50
      ||||||||||| | | ||| | |||||||||||||||  |||||||| ||
seq2  TCAGTAGTAGCCAAG-TAT-TGGTCAGATATACACCCCAGGAAAGCC-TA  47

seq1  TCAACAACAAGCCTCTTCCTATGAGGTGTGCATTTAAACCTCAGTCTACC  100
      |||||||||   ||||  |||||||||| ||| || ||||||||||||||
seq2  TCAACAACA--GCTCT--CTATGAGGTG-GCA-TTGAACCTCAGTCTACC  91

seq1  ATCCTAAGGTAGAGTCCAAAGTC-AGATAAGCCTTTGCTTTTGTGGTTAT  149
      ||||||| ||||||||||||||| ||||||||||| |||||||| | |||
seq2  ATCCTAAAGTAGAGTCCAAAGTCAAGATAAGCCTTGGCTTTTGT-GATAT  140

seq1  GTGGTGTTTTTCATCCATTGTTCTCCTACAAAAGGATTCTCACTGAAGCC  199
      || |||||||||||||| ||||||||||||||| || ||||||||||| |
seq2  GT-GTGTTTTTCATCCA-TGTTCTCCTACAAAA-GAATCTCACTGAAG-C  186

seq1  CAGAG-AGACCCT-AGGAACCTAGCCCTAATAACAGAC-TTTCTAAAG-A  245
      ||||| ||||||| |||||||||||||||||||||||| ||||||||| |
seq2  CAGAGAAGACCCTAAGGAACCTAGCCCTAATAACAGACTTTTCTAAAGAA  236

seq1  ATGGCA-GTGGGGG-AAAAAATCACATTGTAAAAAAAAAAAAAAAAAAAA  293
      |||||| ||||||| |||||||||||||||   |||||||||||||||||
seq2  ATGGCAGGTGGGGGAAAAAAATCACATTGT---AAAAAAAAAAAAAAAAA  283

seq1  AAACAATAAGGCATTTAGAAAACATGATCCAAAGATATATTCTGATTTGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAAGGCATTTAGAAAACATGATCCAAAGATATATTCTGATTTGG  333

seq1  ACAGGAATAAACAAACGTGCTTACCTCTTCATTCATATCTTATTCATCAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATAAACAAACGTGCTTACCTCTTCATTCATATCTTATTCATCAA  383

seq1  TTCTTTAAAAACTATGCCAATTGGAAACCAATTGTGTCATATTATCTCCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAAAACTATGCCAATTGGAAACCAATTGTGTCATATTATCTCCC  433

seq1  ACCATATTCATTAACAAGAAGATCAAAATTAAGCTTTGATTTGTGTCATC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTCATTAACAAGAAGATCAAAATTAAGCTTTGATTTGTGTCATC  483

seq1  ATAGGAAGAAACCTATCTCACTCACTGCCTACCACATTTTTCATCAGAAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGAAACCTATCTCACTCACTGCCTACCACATTTTTCATCAGAAC  533

seq1  ACATAGCTGCTGTGAACAGCTCAGGTTTCAGTGCTGTCTAGTGATGCTTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCTGCTGTGAACAGCTCAGGTTTCAGTGCTGTCTAGTGATGCTTA  583

seq1  CACCATTTGAGGACTAATTTGTACTGTAGCTATCAATATTGGACCTTTGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTGAGGACTAATTTGTACTGTAGCTATCAATATTGGACCTTTGC  633

seq1  TCCAGAACTGCAAAGGTTGGCTTCCAATGGAAAGAGGAATTTCCAAAACA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACTGCAAAGGTTGGCTTCCAATGGAAAGAGGAATTTCCAAAACA  683

seq1  TGGTGTACACACTTTATATGTTATGAAAAGGGACAGAAGGTTTACCATTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTACACACTTTATATGTTATGAAAAGGGACAGAAGGTTTACCATTG  733

seq1  AAGTAGGTAAACCTCCCAAAATTCAGTTCACTCTTTGGCTGCTTAAAGCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGTAAACCTCCCAAAATTCAGTTCACTCTTTGGCTGCTTAAAGCT  783

seq1  TTTGAAACAACTTTCATAGCATTGGCGCTTCATAGATCTCACGTATTATC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACAACTTTCATAGCATTGGCGCTTCATAGATCTCACGTATTATC  833

seq1  AAGGCTAATATGTACCAATATGCAAATGCATGTCCTTGGTATGATAAGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAATATGTACCAATATGCAAATGCATGTCCTTGGTATGATAAGCT  883

seq1  CCTTTCATGTTAAATATCTTCAAAATATTATTCTTATATCTAGGCTGAGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATGTTAAATATCTTCAAAATATTATTCTTATATCTAGGCTGAGC  933

seq1  AAAAGTATCAGAACATACTGATTGAAAAATTGTTATGAAGAGTAAAAAAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATCAGAACATACTGATTGAAAAATTGTTATGAAGAGTAAAAAAC  983

seq1  TTGCTTTTCAAAATGTCAACATCATGAAATTTCAGAAATGTGCTTAATTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTCAAAATGTCAACATCATGAAATTTCAGAAATGTGCTTAATTT  1033

seq1  GAATGACCCTGAAAACAAGCAGCCAACCATATAACTTAACCTTACATAAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACCCTGAAAACAAGCAGCCAACCATATAACTTAACCTTACATAAT  1083

seq1  AATGAATTC  1102
      |||||||||
seq2  AATGAATTC  1092


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