BAC Information

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BAC

Clone NameB6Ng01-177B10
Chromosome16 (Build37)5 (Build37)
Map Location 62,317,596 - 62,318,77379,053,070 - 79,053,323
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177B10.bB6Ng01-177B10.g
ACCGA004455GA004456
length1,1701,136
definitionB6Ng01-177B10.b B6Ng01-177B10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,317,596 - 62,318,773)(79,053,070 - 79,053,323)
sequence
gaattctttctcaattttaattatttactacttaccacgaccataacttc
tgcagtttgaactactataacccagcttcaatgtgtttcttcattccttc
ccccacttcacaggtagaatattaatctgtaccactgatcttagaaactt
caacatgtgttttatattacaaagtgatggatttttgccctttcagttat
aaggaagtacattatagatctttagtgtatttgaattttcagactcatta
gtcttgtgtttggtgttactattaagtaaggtaacaactacgagagccaa
agtaatgtcatgagagtgtatctggtaacagatatggattagcagataac
tgccatatacaatttagacacacagggcatgtcaaatactggcatatgac
ctagggcaagactaagctttgcaagacttcctgttactcaaagtcatgaa
aagtataaaaaaaaaacaaacatgagtcatttctatcctatatcttgcat
ttacactgtttggattatagctcagtgtggaaacttaaaagaaaacttta
aatacaggacttcacactgaagaaggatgccatgatctattcaaaggagt
ttttgaaagatcttctcttagtgtgtacatcatttatttatagtctatca
attatgcttaatttggtgacaatatattcttgaggaatgtgcttttacat
actaacaggatgtgaaatacatatatatttttcaatgtgtttgtgtgtct
ctttgcaagtatgtcgagacacatgaatcctgcaaatcttgtgttgatgc
cagaaaaccattttcaagagacagttctcttcttcaatgtggattctcag
tctctttttccataagcatttaggatgatcaaactcagatcatcagattt
gcacagcaagcttttacctactgatcatttcactgggcttacacatgtaa
ttgttaaacacctattatagacttgcacacatatggtgccagctactcag
gatgatcctttgaacaaaggagtttacgactatagtggtttgatcattag
ttatccaactaggttgcagaaaataaaatgatcgcagagatgaagaactt
ggcaggtggacatgctgatggacagttgggcatactggtgatagctctgt
acttcagtctgggaaacata

gaattctttacttgtataagaagaatcttagttacggtcattccccattt
ttcccttgtatgtttagcaaataagctgtggtacatataaaatctattaa
aatactttcatcccctcccttcctaaaagaagaccagcaatggggaagac
atgatttggttagatgaaggcttctgtttgacactcttacttggtagttg
ttataacaaagcaaaaatactggaaaggataaagactagttctaatatct
aacatttaggaggaaatgcatctgattttaggatcattttggggaataac
agtagaggaatttgacatcggcaccatggttactctatcaaggaatcata
tcctaagagctttgaggtctgtgtgagccagctggaatacacacgtgcct
ttaattccaggagacacagacgagcagatctctgagttcaaggtcaaatt
ggtataaagtaagtttcaggtaaagaaaagcttaggtcggggtttttttg
gtccacacctttaatttcagcactgaagagacagaggcaagaagacctct
gaaatttaatcagtgagttctgttctgttcaattgagttactgcgttgag
aggcagtgtagtgtagtgtagttcatagcagttcagtttttggaggagac
agtttttactggggcgattttatagagaagggtggcagagagaagactgt
agacacagttgaagatagaatgagccagacaatgaggaatttgaagatta
gaacagattgctatagttagtctgaggccaagcagagtaattcagtcaga
agctaagaaaagccagtttgagtaagtcagctcagacaggagtttgagcc
aggactgctgagttgaaccagccagcagagttcagaaaactaatatccac
ttatcagtgagtacatattgtgtgagttcctttgtgaatgtgttacctca
ctcaaggatgatgccctccaggtccattcatttggctaggaattcataaa
ttcattttttcatagctgagtagtactctattggtgtagatgtaccacat
tttctgtatcatctctgtggagggccatctgggttcttcagctctggcta
ttataattaagctgctataaacatagtgggagcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62317596_62318773
seq2: B6Ng01-177B10.b_30_1199

seq1  GAATTCTTTCTCAATTTTAATTATTTACTACTTACCACGACCATAACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCAATTTTAATTATTTACTACTTACCACGACCATAACTTC  50

seq1  TGCAGTTTGAACTACTATAACCCAGCTTCAATGTGTTTCTTCATTCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTGAACTACTATAACCCAGCTTCAATGTGTTTCTTCATTCCTTC  100

seq1  CCCCACTTCACAGGTAGAATATTAATCTGTACCACTGATCTTAGAAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTTCACAGGTAGAATATTAATCTGTACCACTGATCTTAGAAACTT  150

seq1  CAACATGTGTTTTATATTACAAAGTGATGGATTTTTGCCCTTTCAGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTGTTTTATATTACAAAGTGATGGATTTTTGCCCTTTCAGTTAT  200

seq1  AAGGAAGTACATTATAGATCTTTAGTGTATTTGAATTTTCAGACTCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTACATTATAGATCTTTAGTGTATTTGAATTTTCAGACTCATTA  250

seq1  GTCTTGTGTTTGGTGTTACTATTAAGTAAGGTAACAACTACGAGAGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTGTTTGGTGTTACTATTAAGTAAGGTAACAACTACGAGAGCCAA  300

seq1  AGTAATGTCATGAGAGTGTATCTGGTAACAGATATGGATTAGCAGATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGTCATGAGAGTGTATCTGGTAACAGATATGGATTAGCAGATAAC  350

seq1  TGCCATATACAATTTAGACACACAGGGCATGTCAAATACTGGCATATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATATACAATTTAGACACACAGGGCATGTCAAATACTGGCATATGAC  400

seq1  CTAGGGCAAGACTAAGCTTTGCAAGACTTCCTGTTACTCAAAGTCATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCAAGACTAAGCTTTGCAAGACTTCCTGTTACTCAAAGTCATGAA  450

seq1  AAGTATAAAAAAAAAACAAACATGAGTCATTTCTATCCTATATCTTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAAAAAAAAAACAAACATGAGTCATTTCTATCCTATATCTTGCAT  500

seq1  TTACACTGTTTGGATTATAGCTCAGTGTGGAAACTTAAAAGAAAACTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTGTTTGGATTATAGCTCAGTGTGGAAACTTAAAAGAAAACTTTA  550

seq1  AATACAGGACTTCACACTGAAGAAGGATGCCATGATCTATTCAAAGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGGACTTCACACTGAAGAAGGATGCCATGATCTATTCAAAGGAGT  600

seq1  TTTTGAAAGATCTTCTCTTAGTGTGTACATCATTTATTTATAGTCTATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAGATCTTCTCTTAGTGTGTACATCATTTATTTATAGTCTATCA  650

seq1  ATTATGCTTAATTTGGTGACAATATATTCTTGAGGAATGTGCTTTTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCTTAATTTGGTGACAATATATTCTTGAGGAATGTGCTTTTACAT  700

seq1  ACTAACAGGATGTGAAATACATATATATTTTTCAATGTGTTTGTGTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAGGATGTGAAATACATATATATTTTTCAATGTGTTTGTGTGTCT  750

seq1  CTTTGCAAGTATGTCGAGACACATGAATCCTGCAAATCTTGTGTTGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAAGTATGTCGAGACACATGAATCCTGCAAATCTTGTGTTGATGC  800

seq1  CAGAAAACCATTTTCAAGAGACAGTTCTCTTCTTCAATGTGGATTCTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACCATTTTCAAGAGACAGTTCTCTTCTTCAATGTGGATTCTCAG  850

seq1  TCTCTTTTTCCATAAGCATTTAGGATGATCAAACTCAGATCATCAGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTCCATAAGCATTTAGGATGATCAAACTCAGATCATCAGATTT  900

seq1  GCACAGCAAGCTTTTACCTACTGATCATTTCACTGGGCTTACACATGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCAAGCTTTTACCTACTGATCATTTCACTGGGCTTACACATGTAA  950

seq1  TTGTTAAACACCTATTATAGACTTGCACACATATGGTGCCAGCTACTCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAACACCTATTATAGACTTGCACACATATGGTGCCAGCTACTCAG  1000

seq1  GATGATCCTTTGAACAAAGGAGTTTACGACTATAGTGGTTTTGATCATTA  1050
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GATGATCCTTTGAACAAAGGAGTTTACGACTATAGTGG-TTTGATCATTA  1049

seq1  GTTATCCAACCTAAGTTTGGCAG-AAATAAAATGATCGCCAAGGAGATGG  1099
      ||||||||| ||| |||  |||| |||||||||||||||    |||||| 
seq2  GTTATCCAA-CTAGGTT--GCAGAAAATAAAATGATCGC---AGAGATGA  1093

seq1  AG-ACTTTGCAGTTGGACATGCTGATTGACAGTGGGGCCATACCTGTGAT  1148
      || |||| |||| ||||||||||||| |||||| ||| |||||  |||| 
seq2  AGAACTTGGCAGGTGGACATGCTGATGGACAGTTGGG-CATACTGGTGA-  1141

seq1  TAGCCTCTGTACTTCAGTCTGGGAAACATA  1178
      ||| ||||||||||||||||||||||||||
seq2  TAG-CTCTGTACTTCAGTCTGGGAAACATA  1170


seq1: chr5_79053070_79053323
seq2: B6Ng01-177B10.g_953_1199 (reverse)

seq1  CATGCT-CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG  49
      |||||| |||||||||| ||||||| |||| ||||||||||||| |||||
seq2  CATGCTCCCACTATGTTTATAGCAG-CTTAATTATAATAGCCAG-AGCTG  48

seq1  GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT  99
        ||||||||||||| ||||| ||||||  || |||||||||||||||||
seq2  --AAGAACCCAGATGGCCCTCCACAGAG--AT-GATACAGAAAATGTGGT  93

seq1  ACATCTACA-CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT  148
      ||||||||| |||| ||||||||||||||||| ||||  |||||||||||
seq2  ACATCTACACCAATAGAGTACTACTCAGCTATGAAAA--AATGAATTTAT  141

seq1  GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC-TGAGTGAG  197
      | |||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  G-AATTCCTAGCCAAATGAATGGACCTGGAGGGCATCATCCTTGAGTGAG  190

seq1  GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG  240

seq1  ATATTAG  254
      |||||||
seq2  ATATTAG  247


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