BAC Information

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BAC

Clone NameB6Ng01-178M08
Chromosome16 (Build37)
Map Location 86,168,741 - 86,328,886
singlet/doubletdoublet
Overlap geneLOC100039780
Upstream geneApp, Cyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178M08.bB6Ng01-178M08.g
ACCGA005664GA005665
length1,1131,152
definitionB6Ng01-178M08.b B6Ng01-178M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,168,741 - 86,169,859)(86,327,732 - 86,328,886)
sequence
gaattcactaaaatcaagctctagtaaatgttagctttaacagtccatta
aatgctacacaatatcagtttgcagcccatcaaaatggagatcttcctcc
attgggatagttttgttccagcactgccttccaggcatcaaataatggaa
aggacagagtaggctgcaccaaaaggatctacagcagtctgagaaactga
gagattctttatccaggagttggaggaagacatcattgtttgcatagcag
attttaaaatgaaggaatgaaagttttcatatgactcatacctaagtact
ttccatgtaacgtttgtagtttaaagaaatttcacaaactgaattacatg
ctaacatgtacctcttggccagggttcatggtgtcaaggtaagaaggttg
attttacggctaacataaatttcatgtcacagtattgttttaaataaaat
tatatatttcatattgccaagaatagaatcaaattaaattacgaatgcat
taaattctaggattcattgggaagaactgtttaggagttaggaagaatca
aatcaaaggcaggcagagaatgctagccacatggacttgcaggctgcctt
ggaaaagcaaatgaagatatttgtgtaaagttgacaatgactgcagattc
tgtaatctttcaggatagcagagtattagctgtgggctttcatcacttaa
tctaatgactatcaggaacattgacattgtattagctgtattttgtttat
atggcctggttgatttttaatctgttcaaggaatgattaatcctgatctt
ccttttatttaaaaaaaatttttttggttaagttctcagtaggaagagag
tatatcccaacattacaatattattgtaggtgatgctgtgaatattttta
ttgggaatgatatttttggagatgtttctcctaaaggtaactgtggtcat
cacaggcatagacattcataatgctgaacgcatgcatatgaccctagcag
tattattctgagacagagttggcacagaaatgccattcatactcttgcaa
agatttagccttaaatgagattatgtatggcatgaggaaaatacgaaaaa
atagggataaaaa

gaattccaaatactcaatatggagataatttatttgggtatcaaaatgaa
caaaaaatattgggttttattccaaattatattaaaaactccatgtgtac
gttaatgaatgactggacaaatgagggagaagaagtcaatctgctttata
gaattctaaatgatcaaggtagtccacactaataaatatgggacataagt
agcaaactcttctaaagaataggacaatacttagagtatctttactatgg
agaattctgtttatcacaaaagtagacaagttaccaaggtcaactcaaaa
gatcatactctccatatacttcacatggtgatttaagcagctctttactg
ttttcatagacattttactgttttcagaagactctgacctaaaggaaatg
atgaccaaagagcattaaatgatactcaaaagtaatatcatttataaaac
tattgtttgatagagaataggagggttcttagatattaactgagtcaggt
aaaagagtgaacacatatctataatataaacaatttattttgttaatctg
agagaggctttaaaggtgtaacattttaaattagcaaaacaatgtaaaaa
ttcaaatatggtattgagtatagtcactcatgtctgctgtcacaatacct
gggagtctgagacagaagggttgctatgagtgtagggtcatccttacatt
ttgagtgagaccatgttttttttaaaaaaatcaataaattaaatagctct
gatattattacttaggccaatgaagagactacatgaaataggataatatt
ataaagtgtacactgatttgccttatatactgaagagattatacaaggta
caaaaaaacctcacaatgtatatcccacaactgcatccacaagaaacata
gttggcactctctcttgagacaagcagaaggtttctttaaacatttcttt
ttaaaatttgcttccattgagatagatgggatagcaatgatttccataaa
catgtctcttctgtcattgatggatacttacttacaaatgttagtacagt
atcatacttcttcttaaattgaagtagataatagtagggcatcatattat
tgatgcattaattacttgttctggtcattctagcagaattctctagaaat
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_86168741_86169859
seq2: B6Ng01-178M08.b_42_1154

seq1  GAATTCACTAAAATCAAGCTCTAGTAAATGTTAGCTTTAACAGTCCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAAATCAAGCTCTAGTAAATGTTAGCTTTAACAGTCCATTA  50

seq1  AATGCTACACAATATCAGTTTGCAGCCCATCAAAATGGAGATCTTCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTACACAATATCAGTTTGCAGCCCATCAAAATGGAGATCTTCCTCC  100

seq1  ATTGGGATAGTTTTGTTCCAGCACTGCCTTCCAGGCATCAAATAATGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGATAGTTTTGTTCCAGCACTGCCTTCCAGGCATCAAATAATGGAA  150

seq1  AGGACAGAGTAGGCTGCACCAAAAGGATCTACAGCAGTCTGAGAAACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGAGTAGGCTGCACCAAAAGGATCTACAGCAGTCTGAGAAACTGA  200

seq1  GAGATTCTTTATCCAGGAGTTGGAGGAAGACATCATTGTTTGCATAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTTTATCCAGGAGTTGGAGGAAGACATCATTGTTTGCATAGCAG  250

seq1  ATTTTAAAATGAAGGAATGAAAGTTTTCATATGACTCATACCTAAGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAATGAAGGAATGAAAGTTTTCATATGACTCATACCTAAGTACT  300

seq1  TTCCATGTAACGTTTGTAGTTTAAAGAAATTTCACAAACTGAATTACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTAACGTTTGTAGTTTAAAGAAATTTCACAAACTGAATTACATG  350

seq1  CTAACATGTACCTCTTGGCCAGGGTTCATGGTGTCAAGGTAAGAAGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATGTACCTCTTGGCCAGGGTTCATGGTGTCAAGGTAAGAAGGTTG  400

seq1  ATTTTACGGCTAACATAAATTTCATGTCACAGTATTGTTTTAAATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACGGCTAACATAAATTTCATGTCACAGTATTGTTTTAAATAAAAT  450

seq1  TATATATTTCATATTGCCAAGAATAGAATCAAATTAAATTACGAATGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTCATATTGCCAAGAATAGAATCAAATTAAATTACGAATGCAT  500

seq1  TAAATTCTAGGATTCATTGGGAAGAACTGTTTAGGAGTTAGGAAGAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTAGGATTCATTGGGAAGAACTGTTTAGGAGTTAGGAAGAATCA  550

seq1  AATCAAAGGCAGGCAGAGAATGCTAGCCACATGGACTTGCAGGCTGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGGCAGGCAGAGAATGCTAGCCACATGGACTTGCAGGCTGCCTT  600

seq1  GGAAAAGCAAATGAAGATATTTGTGTAAAGTTGACAATGACTGCAGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGCAAATGAAGATATTTGTGTAAAGTTGACAATGACTGCAGATTC  650

seq1  TGTAATCTTTCAGGATAGCAGAGTATTAGCTGTGGGCTTTCATCACTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCTTTCAGGATAGCAGAGTATTAGCTGTGGGCTTTCATCACTTAA  700

seq1  TCTAATGACTATCAGGAACATTGACATTGTATTAGCTGTATTTTGTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGACTATCAGGAACATTGACATTGTATTAGCTGTATTTTGTTTAT  750

seq1  ATGGCCTGGTTGATTTTTAATCTGTTCAAGGAATGATTAATCCTGATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTGGTTGATTTTTAATCTGTTCAAGGAATGATTAATCCTGATCTT  800

seq1  CCTTTTATTTAAAAAAAATTTTTTTGGTTAAGTTCTCAGTAGGAAGAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATTTAAAAAAAATTTTTTTGGTTAAGTTCTCAGTAGGAAGAGAG  850

seq1  TATATCCCAACATTACAATATTATTGTAGGTGATGCTGTGAATATTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCCAACATTACAATATTATTGTAGGTGATGCTGTGAATATTTTTA  900

seq1  TTGGGAATGATATTTTTGGAGATGTTTCTCCT-AAGGTAACTGTGGTCAT  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGGGAATGATATTTTTGGAGATGTTTCTCCTAAAGGTAACTGTGGTCAT  950

seq1  CACAGGCATAGACATTCATAATGCTGAACGCATGCATATGACCCTAGCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACAGGCATAGACATTCATAATGCTGAACGCATGCATATGACCCTAGCA-  999

seq1  GTATTA-TCTGAGACAAGAGTTGCCACAGAAA-GGCATTCAATACTCCTG  1047
      |||||| |||||||| ||||||| |||||||| | ||||| |||||| ||
seq2  GTATTATTCTGAGAC-AGAGTTGGCACAGAAATGCCATTC-ATACTCTTG  1047

seq1  CAAAGATTTAGCCTAAAATGAGGATTAATGTTATGGCATGAGGAAAATAA  1097
      |||||||||||||| |||||| |||| ||| |||||||||||||||||| 
seq2  CAAAGATTTAGCCTTAAATGA-GATT-ATG-TATGGCATGAGGAAAATAC  1094

seq1  GGAAAAAAAATAGGGATAAAAA  1119
      |   ||||||||||||||||||
seq2  G---AAAAAATAGGGATAAAAA  1113


seq1: chr16_86327732_86328886
seq2: B6Ng01-178M08.g_66_1217 (reverse)

seq1  CCATTTTCCTAG-GAATTCTGCTAGAATGACCAG-ACAAGTAATTAATGC  48
      ||||||  |||| ||||||||||||||||||||| |||||||||||||||
seq2  CCATTT--CTAGAGAATTCTGCTAGAATGACCAGAACAAGTAATTAATGC  48

seq1  ATCAAT-ATATGATTGCCCTTACTATTATCTACTTCAATTTAGAGAAG--  95
      |||||| |||||| ||||| |||||||||||||||||||||| |||||  
seq2  ATCAATAATATGA-TGCCC-TACTATTATCTACTTCAATTTA-AGAAGAA  95

seq1  GTATGATTACTGTTACTAACATTTGTAAGTAAGTATCCATCAATGACAGA  145
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  GTATGA-TACTG-TACTAACATTTGTAAGTAAGTATCCATCAATGACAGA  143

seq1  AGGAGACATGTTTATGGAAATCATTGCTATCCCATCTATCTCAATGGAAG  195
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GAGACATGTTTATGGAAATCATTGCTATCCCATCTATCTCAATGGAAG  192

seq1  CAAATTTTAAAAAGAAATGTTTAAAGAAACCTTCTGCTTGTCTCAAGAGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTAAAAAGAAATGTTTAAAGAAACCTTCTGCTTGTCTCAAGAGA  242

seq1  GAGTGCCAACTATGTTTCTTGTGGATGCAGTTGTGGGATATACATTGTGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCAACTATGTTTCTTGTGGATGCAGTTGTGGGATATACATTGTGA  292

seq1  GGTTTTTTTGTACCTTGTATAATCTCTTCAGTATATAAGGCAAATCAGTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTGTACCTTGTATAATCTCTTCAGTATATAAGGCAAATCAGTG  342

seq1  TACACTTTATAATATTATCCTATTTCATGTAGTCTCTTCATTGGCCTAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTTATAATATTATCCTATTTCATGTAGTCTCTTCATTGGCCTAAG  392

seq1  TAATAATATCAGAGCTATTTAATTTATTGATTTTTTTAAAAAAAACATGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATATCAGAGCTATTTAATTTATTGATTTTTTTAAAAAAAACATGG  442

seq1  TCTCACTCAAAATGTAAGGATGACCCTACACTCATAGCAACCCTTCTGTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTCAAAATGTAAGGATGACCCTACACTCATAGCAACCCTTCTGTC  492

seq1  TCAGACTCCCAGGTATTGTGACAGCAGACATGAGTGACTATACTCAATAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTCCCAGGTATTGTGACAGCAGACATGAGTGACTATACTCAATAC  542

seq1  CATATTTGAATTTTTACATTGTTTTGCTAATTTAAAATGTTACACCTTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGAATTTTTACATTGTTTTGCTAATTTAAAATGTTACACCTTTA  592

seq1  AAGCCTCTCTCAGATTAACAAAATAAATTGTTTATATTATAGATATGTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCTCTCAGATTAACAAAATAAATTGTTTATATTATAGATATGTGT  642

seq1  TCACTCTTTTACCTGACTCAGTTAATATCTAAGAACCCTCCTATTCTCTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTTTTACCTGACTCAGTTAATATCTAAGAACCCTCCTATTCTCTA  692

seq1  TCAAACAATAGTTTTATAAATGATATTACTTTTGAGTATCATTTAATGCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAATAGTTTTATAAATGATATTACTTTTGAGTATCATTTAATGCT  742

seq1  CTTTGGTCATCATTTCCTTTAGGTCAGAGTCTTCTGAAAACAGTAAAATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTCATCATTTCCTTTAGGTCAGAGTCTTCTGAAAACAGTAAAATG  792

seq1  TCTATGAAAACAGTAAAGAGCTGCTTAAATCACCATGTGAAGTATATGGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAAAACAGTAAAGAGCTGCTTAAATCACCATGTGAAGTATATGGA  842

seq1  GAGTATGATCTTTTGAGTTGACCTTGGTAACTTGTCTACTTTTGTGATAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGATCTTTTGAGTTGACCTTGGTAACTTGTCTACTTTTGTGATAA  892

seq1  ACAGAATTCTCCATAGTAAAGATACTCTAAGTATTGTCCTATTCTTTAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTCTCCATAGTAAAGATACTCTAAGTATTGTCCTATTCTTTAGA  942

seq1  AGAGTTTGCTACTTATGTCCCATATTTATTAGTGTGGACTACCTTGATCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGCTACTTATGTCCCATATTTATTAGTGTGGACTACCTTGATCA  992

seq1  TTTAGAATTCTATAAAGCAGATTGACTTCTTCTCCCTCATTTGTCCAGTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATTCTATAAAGCAGATTGACTTCTTCTCCCTCATTTGTCCAGTC  1042

seq1  ATTCATTAACGTACACATGGAGTTTTTAATATAATTTGGAATAAAACCCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAACGTACACATGGAGTTTTTAATATAATTTGGAATAAAACCCA  1092

seq1  ATATTTTTTGTTCATTTTGATACCCAAATAAATTATCTCCATATTGAGTA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTGTTCATTTTGATACCCAAATAAATTATCTCCATATTGAGTA  1142

seq1  TTTGGAATTC  1155
      ||||||||||
seq2  TTTGGAATTC  1152


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