BAC Information

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BAC

Clone NameB6Ng01-179F05
Chromosome16 (Build37)
Map Location 88,458,242 - 88,587,753
singlet/doubletdoublet
Overlap geneEG622373, Cldn17, Cldn8
Upstream geneUsp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
Downstream geneGm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179F05.bB6Ng01-179F05.g
ACCGA006077GA006078
length471979
definitionB6Ng01-179F05.b B6Ng01-179F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,587,277 - 88,587,753)(88,458,242 - 88,459,216)
sequence
atgaaagctggctggtggtcaacttgccttgttcgtatttcaataggtca
gggttcagactttaaagttgtgtccaattttaggctagattttcccatat
tgatgaaggcaattaaaatactctcatacattatccccacaggtcaacat
ggtcttgataatccctccctgttactctcttctcaagagattctaggttg
tggttagtaaagagttaaaactaagcaccacaacttccaaccactcacag
tcctgagtattttttgtgttttaatataaaagctttggaagttgttcgta
gtcttttaacatcagtttttgtctatttgtgtggtttttgttgttgttgt
tgattttgtttgtttgggattttcttggcctcatgtcctctcttcttatg
aactgtcaactatcttgagtgtaaaaatgacacaggcagaaactttaaag
attacctctattctctgaggc
gaattccagaagataaagacagggttcaaggtcatctgggattaaaggca
aaggtggcacacacgtttaatctgggccacaccttctgctggagacctac
ataaggacattggaagaaggaagattggcgctctctctctttctctctct
ttccctatctttcttctttgcctgcttgccttgtgggactgaacaactgt
tagattcttggacttccattcaagctgctactgaccattgttgggagttg
gactgcagactgcaagtcatcaacattaaaggacaaggttttataggtac
atttacattttttccaattattggattggtggatacagggctgtatttga
tatgtgtgcgatttcatggttgtgaatcttctttagcacgataatatatt
tgtttttagcagattttttattttgaagtagcctcaaaggcctcacagat
ttgccttcattattcatctcggagtacttagtgtttacttcttttaaacc
ctggagtccagctgggagcccggtacgtttatttttcattgtgctttgta
cctattagcaaggtctgcttccttttgtgaagaattgcaaaaatcttcat
ggggaacaatgaaggcagagaaaagcaccacagctgttgaaactgcacta
caaggtgaacttctggttatccacgtcattcatattgtcaagtgaatatc
agcgtgtagtcattctgactgcatgcttcttggccattttttaagtcttc
cttgttaatataaagatagcggttttattaaagcacatttttatgttggc
tgagataaagcccaacaaattttctattgtttgctttgatcttctcattc
ctcctacttgagagacaaatgtcaaaacacatgagtatctctgggataat
agggctgttaaggaaaaacagtatcccagagtgacttttcctgaacttta
tgggtatgaaatgtccaaatgcatgcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88587277_88587753
seq2: B6Ng01-179F05.b_45_521 (reverse)

seq1  GCCTCAGAGAATAGAGGTAATCTTTAAAGTTTCTGCCTGTGTCATTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGAGAATAGAGGTAATCTTTAAAGTTTCTGCCTGTGTCATTTTTA  50

seq1  CACTCAAGATAGTTGACAGTTCATAAGAAGAGAGGACATGAGGCCAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAGATAGTTGACAGTTCATAAGAAGAGAGGACATGAGGCCAAGAA  100

seq1  AATCCCAAACAAACAAAATCAACAACAACAACAAAAACCACACAAATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAAACAAACAAAATCAACAACAACAACAAAAACCACACAAATAGA  150

seq1  CAAAAACTGATGTTAAAAGACTACGAACAACTTCCAAAGCTTTTATATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTGATGTTAAAAGACTACGAACAACTTCCAAAGCTTTTATATTA  200

seq1  AAACACAAAAAATACTCAGGACTGTGAGTGGTTGGAAGTTGTGGTGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAAAAATACTCAGGACTGTGAGTGGTTGGAAGTTGTGGTGCTTA  250

seq1  GTTTTAACTCTTTACTAACCACAACCTAGAATCTCTTGAGAAGAGAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAACTCTTTACTAACCACAACCTAGAATCTCTTGAGAAGAGAGTAA  300

seq1  CAGGGAGGGATTATCAAGACCATGTTGACCTGTGGGGATAATGTATGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGGATTATCAAGACCATGTTGACCTGTGGGGATAATGTATGAGA  350

seq1  GTATTTTAATTGCCTTCATCAATATGGGAAAATCTAGCCTAAAATTGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTAATTGCCTTCATCAATATGGGAAAATCTAGCCTAAAATTGGAC  400

seq1  ACAACTTTAAAGTCTGAACCCTGACCTATTGAAATATGAACAAGGCAAGT  450
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAACTTTAAAGTCTGAACCCTGACCTATTGAAATACGAACAAGGCAAGT  450

seq1  TGACCACCAGCCAGCTTTCATGAATTC  477
      |||||||||||||||||||||||||||
seq2  TGACCACCAGCCAGCTTTCATGAATTC  477

seq1: chr16_88458242_88459216
seq2: B6Ng01-179F05.g_66_1044

seq1  GAATTCCAGAAGATAAAGACAGGGTTCAAGGTCATCTGGGATTAAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGATAAAGACAGGGTTCAAGGTCATCTGGGATTAAAGGCA  50

seq1  AAGGTGGCACACACGTTTAATCTGGGCCACACCTTCTGCTGGAGACCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGCACACACGTTTAATCTGGGCCACACCTTCTGCTGGAGACCTAC  100

seq1  ATAAGGACATTGGAAGAAGGAAGATTGGCGCTCTCTCTCTTTCTCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGACATTGGAAGAAGGAAGATTGGCGCTCTCTCTCTTTCTCTCTCT  150

seq1  TTCCCTATCTTTCTTCTTTGCCTGCTTGCCTTGTGGGACTGAACAACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTATCTTTCTTCTTTGCCTGCTTGCCTTGTGGGACTGAACAACTGT  200

seq1  TAGATTCTTGGACTTCCATTCAAGCTGCTACTGACCATTGTTGGGAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCTTGGACTTCCATTCAAGCTGCTACTGACCATTGTTGGGAGTTG  250

seq1  GACTGCAGACTGCAAGTCATCAACATTAAAGGACAAGGTTTTATAGGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAGACTGCAAGTCATCAACATTAAAGGACAAGGTTTTATAGGTAC  300

seq1  ATTTACATTTTTTCCAATTATTGGATTGGTGGATACAGGGCTGTATTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTTTTTCCAATTATTGGATTGGTGGATACAGGGCTGTATTTGA  350

seq1  TATGTGTGCGATTTCATGGTTGTGAATCTTCTTTAGCACGATAATATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGCGATTTCATGGTTGTGAATCTTCTTTAGCACGATAATATATT  400

seq1  TGTTTTTAGCAGATTTTTTATTTTGAAGTAGCCTCAAAGGCCTCACAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAGCAGATTTTTTATTTTGAAGTAGCCTCAAAGGCCTCACAGAT  450

seq1  TTGCCTTCATTATTCATCTCGGAGTACTTAGTGTTTACTTCTTTTAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTCATTATTCATCTCGGAGTACTTAGTGTTTACTTCTTTTAAACC  500

seq1  CTGGAGTCCAGCTGGGAGCCCGGTACGTTTATTTTTCATTGTGCTTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTCCAGCTGGGAGCCCGGTACGTTTATTTTTCATTGTGCTTTGTA  550

seq1  CCTATTAGCAAGGTCTGCTTCCTTTTGTGAAGAATTGCAAAAATCTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTAGCAAGGTCTGCTTCCTTTTGTGAAGAATTGCAAAAATCTTCAT  600

seq1  GGGGAACAATGAAGGCAGAGAAAAGCACCACAGCTGTTGAAACTGCACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACAATGAAGGCAGAGAAAAGCACCACAGCTGTTGAAACTGCACTA  650

seq1  CAAGGTGAACTTCTGGTTATCCACGTCATTCATATTGTCAAGTGAATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGAACTTCTGGTTATCCACGTCATTCATATTGTCAAGTGAATATC  700

seq1  AGCGTGTAGTCATTCTGACTGCATGCTTCTTGGCCA-TTTTTAAGTCTTC  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGCGTGTAGTCATTCTGACTGCATGCTTCTTGGCCATTTTTTAAGTCTTC  750

seq1  CTTGTTAATATAAAGATAGCGGTTTTATTAAAGCACATTTTTATGTTGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAATATAAAGATAGCGGTTTTATTAAAGCACATTTTTATGTTGGC  800

seq1  TGAGATAA--GCCAACAAATTTTCTATTGTTTGCTTTGATCTTCTCATTC  847
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAAAGCCCAACAAATTTTCTATTGTTTGCTTTGATCTTCTCATTC  850

seq1  CTCCTAC-TGAGAGACAAATGTCAGAAACACAGTGAGTATCTCT-GGATA  895
      ||||||| |||||||||||||||| ||||||| ||||||||||| |||||
seq2  CTCCTACTTGAGAGACAAATGTCA-AAACACA-TGAGTATCTCTGGGATA  898

seq1  ATAGGTCTGTTTATGGAAAAACAGTATCCCAGAGTGACTTTACATG-ACT  944
      ||||| ||| ||| ||||||||||||||||||||||||||| | || |||
seq2  ATAGGGCTG-TTAAGGAAAAACAGTATCCCAGAGTGACTTTTCCTGAACT  947

seq1  TTATGGGTA-GGAATGTCTAAATGCATGCTTT  975
      ||||||||| | |||||| |||||||||| ||
seq2  TTATGGGTATGAAATGTCCAAATGCATGCCTT  979