BAC Information

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BAC

Clone NameB6Ng01-179F15
Chromosome16 (Build37)
Map Location 90,795,336 - 90,796,308
singlet/doubletsinglet
Overlap gene4921511H13Rik
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap
Downstream gene4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179F15.bB6Ng01-179F15.g
ACCGA006096GA006097
length979946
definitionB6Ng01-179F15.b B6Ng01-179F15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccgtccagaagacctcacattttgcttatgttgtgattgtaaatt
catgagctaaattaaagctgtccccctcacattggtccaatcctcgcatt
cattttggttttccttggatgcttctgaacatggacttggctagcctggc
aaggactcaggctcactgttaagttgatggccatttgcctcttgagagcc
tgcttttgcttctctctcggtgactcgccctctcctctgctttaaacact
gttgtatgttcctcaccaggaattcccacaggctgacagacgcactcgtg
aacgtgggcgtttattcaggagcacaagacaaatcttagccatttttaac
cttttaaagtttaaacttacaagctgaatctcatccttcttaagagtgtt
gtgtcatcctgatcagtgtgtatctactgcctgggggtacttgtttgcct
tttcaattgatctcaagtattgatttaaagtacatccctagttgctatca
tcacgtgatattgcccagttttaattttgtagctgtcactaaggaccttg
gaattgatagtttattaaacccttctagatatcagctgaagaggcgggga
aagccatggtgagggacctcgttcataacttcctgatggatctctgctgt
tctcgaaagcatgggattagtttttatgatgcctctttgggaacttctgg
caggtaaagtacatttgctctgtgaacctcctgtgtgtatgtttcttaaa
gggtggcgcatcctgacagcccagtggaatctgtgatgctttcaggtcaa
aatcatggacatgattaaactcatttaggggagatttagagagtgtgtat
ttatcagtgcccttggaggcagtagactcacagtttgtaattcaggcata
cagataaaggtccgtttaccaaggagaaggtagtggatgtgtgcatttaa
agactaccagtgtcccctggatcagagaa
gaattcttcttggtagatttttcctttgatgagtatgaagtgtccttcct
tatcctttttgataactgttggttgaaagttgcttttattcgatattaga
atggctactacttcagcttgtttcttgggaccatttgtttggaaagttat
tttccagccctttacgctaaggtactgtctttctttgacactgagatgca
tttcctgtatgcagcaaaatgttgggtcctgtttacatatccagtcggtt
attctatgtctttttattggggaattgagtccattgatgttaagagatat
taaggaatagtgattgttgcttcctgatattttttatgttatttttatgt
ttgtgtggctatcttcttttgggtttgttgaaagagattactttcttgct
ttttctagggtgtagtttccttcctgtgttagcatttttccatctattat
cctttgtagggctagatttgtggaaaaatattgtgtaaatttggtttttt
tcatagactatcttagtttttccatctatggtaattgagagttttgctga
gtatagtagcctgggatagcatttgtgttctcttagggtctgtacgacat
ctgtccatgatcttctggctttcatagtctctggtgagaagtcttggtgt
aaattctgataggcctgcctttatatgttacttgaccttttttaccttta
ctgctttttaatatttctttccttttttttgtacatttcagtgtttttga
ctaattatgtgacaagaggaattttctttttctggttccaatctattttg
gaatttctgtaggcttccttgtatgtttaatgggcatctctttctttaag
gttattggaagttttcttctatgaattttgtttgaagatattttactggt
tcctttaaactgagaatctctactctcttctactcctttatttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90795336_90796308
seq2: B6Ng01-179F15.b_47_1025 (reverse)

seq1  TTCTCTGATCCA-GGGACACT-GTTGTCTTTAAATACACACATCCACTAC  48
      |||||||||||| |||||||| || |||||||||| ||||||||||||||
seq2  TTCTCTGATCCAGGGGACACTGGTAGTCTTTAAATGCACACATCCACTAC  50

seq1  CTTCTCCTTGGTAAACGGACCTTTATCTGTATGCCTGAATTAC-AACTGT  97
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTCTCCTTGGTAAACGGACCTTTATCTGTATGCCTGAATTACAAACTGT  100

seq1  GAGTCTACTGCCTCCAAGGGCACTGATAAATACACACTCTCTAAATCTCC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTACTGCCTCCAAGGGCACTGATAAATACACACTCTCTAAATCTCC  150

seq1  CCTAAATGAGTTTAATCATGTCCATGATTTTGACCTG-AAGCATCACAGA  196
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTAAATGAGTTTAATCATGTCCATGATTTTGACCTGAAAGCATCACAGA  200

seq1  TTCCACTGGGCTGTCAGGATGCGCCACCCTTTAAGAAACATACACACAGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGGGCTGTCAGGATGCGCCACCCTTTAAGAAACATACACACAGG  250

seq1  -GGTTCACAGAGC-AATGTACTTTACCTGCCAGAAGTTCCCAAAGAGGCA  294
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGTTCACAGAGCAAATGTACTTTACCTGCCAGAAGTTCCCAAAGAGGCA  300

seq1  TCATAAAAACTAATCCCATGCTTTCGAGAACAGCAGAGATCCATCAGGAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAAACTAATCCCATGCTTTCGAGAACAGCAGAGATCCATCAGGAA  350

seq1  GTTATGAACGAGGTCCCTCACCATGGCTTTCCCCGCCTCTTCAGCTGATA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAACGAGGTCCCTCACCATGGCTTTCCCCGCCTCTTCAGCTGATA  400

seq1  TCTAGAAGGGTTTAATAAACTATCAATTCCAAGGTCCTTAGTGACAGCTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGGGTTTAATAAACTATCAATTCCAAGGTCCTTAGTGACAGCTA  450

seq1  CAAAATTAAAACTGGGCAATATCACGTGATGATAGCAACTAGGGATGTAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTAAAACTGGGCAATATCACGTGATGATAGCAACTAGGGATGTAC  500

seq1  TTTAAATCAATACTTGAGATCAATTGAAAAGGCAAACAAGTACCCCCAGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCAATACTTGAGATCAATTGAAAAGGCAAACAAGTACCCCCAGG  550

seq1  CAGTAGATACACACTGATCAGGATGACACAACACTCTTAAGAAGGATGAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGATACACACTGATCAGGATGACACAACACTCTTAAGAAGGATGAG  600

seq1  ATTCAGCTTGTAAGTTTAAACTTTAAAAGGTTAAAAATGGCTAAGATTTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCTTGTAAGTTTAAACTTTAAAAGGTTAAAAATGGCTAAGATTTG  650

seq1  TCTTGTGCTCCTGAATAAACGCCCACGTTCACGAGTGCGTCTGTCAGCCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGCTCCTGAATAAACGCCCACGTTCACGAGTGCGTCTGTCAGCCT  700

seq1  GTGGGAATTCCTGGTGAGGAACATACAACAGTGTTTAAAGCAGAGGAGAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAATTCCTGGTGAGGAACATACAACAGTGTTTAAAGCAGAGGAGAG  750

seq1  GGCGAGTCACCGAGAGAGAAGCAAAAGCAGGCTCTCAAGAGGCAAATGGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGTCACCGAGAGAGAAGCAAAAGCAGGCTCTCAAGAGGCAAATGGC  800

seq1  CATCAACTTAACAGTGAGCCTGAGTCCTTGCCAGGCTAGCCAAGTCCATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACTTAACAGTGAGCCTGAGTCCTTGCCAGGCTAGCCAAGTCCATG  850

seq1  TTCAGAAGCATCCAAGGAAAACCAAAATGAATGCGAGGATTGGACCAATG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGCATCCAAGGAAAACCAAAATGAATGCGAGGATTGGACCAATG  900

seq1  TGAGGGGGACAGCTTTAATTTAGCTCATGAATTTACAATCACAACATAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGGACAGCTTTAATTTAGCTCATGAATTTACAATCACAACATAAG  950

seq1  CAAAATGTGAGGTCTTCTGGACGGAATTC  973
      |||||||||||||||||||||||||||||
seq2  CAAAATGTGAGGTCTTCTGGACGGAATTC  979