BAC Information

Click to search

BAC

Clone NameB6Ng01-179G13
Chromosome16 (Build37)
Map Location 79,542,640 - 79,543,171
singlet/doubletsinglet
Overlap genenone
Upstream geneD16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
Downstream geneEG383172, 1700066C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179G13.bB6Ng01-179G13.g
ACCGA006138GA006139
length1,0391,212
definitionB6Ng01-179G13.b B6Ng01-179G13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatacatattcaattcaattcaactcatttatctttaacgcgttc
tcacgaccagccaggaaagacgcaacaaaccggaatcttctgcggcaaaa
gctttattgcttacatcttcaggagcaagagcaagagagcaagagacgaa
gagagagagtgccagaaccccgtcccttttaaggagaattatcctccacc
taggacgtgttactccctgattggctgcagcccatcggcccagttgtcat
cacgggaaaggcagaacacatggcgggaaaactgcccctgcatgtgtgca
gattttgtttaccacttagaacacagctgtcaggaccatcttataatggc
aaatgtgagggcggctcctcacagatcccccttttcttttaataagagca
ataggccacccatattaatgagagtggagatagaggtcaaatccccagtg
tgcaggtaaaggagccgtacacataacctcctcccaggctcatcacccag
aggggtcctggtctggtcccgtgttgtttttcctgggggaaggacacttg
aacactcaaccttcttgaaagatgacatgtctccctagaataggctcata
tatgccgcagagcccttctactgcagtgcttagccgtgcaactctctcgg
gctgctgaagcacactcactctatcccgtgcaatgagactagcctcgtgg
ggtttaagagctgagtggccagcgacctattgcttaagcatagataacta
tatatcatgggaagcaccatgaggagatccaatttgggtaatccttttgg
tcaggaacaggtccaagcgcgtggagttgacctgaatgatggcaattctc
aattcccgaagggtctgttcaaattcagccatccaattctgtaacatata
ctgagaaagacttttttaacaaattagctgccctagtaaatttctcatac
tgaatggaagtaacgcatatcctgggaaacttttgtcacattcccagcca
ctttctaaagatttactgcatttaccacattaacaggaa
gaattctcacctgaggaattccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaactctcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccatctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aataatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccatttgcatacactagcaagattttactgaa
aggacccagatgtagctgtctcttgtgagactatgccggggccctagcaa
aacacagaagtgggatgctcacagtcagcttaatggatgggatcacaagg
gctcccaatggaggagctagagaaagtacccaaggagctatagggatctt
caaccctataggtgaaacaacattatgaactaaccagtacccctgagctc
ttgacctctagctgcatatgtatcaaaagaatggtcttagtcggccatca
ctggaagagaggccattgggaccagcagacttttgggtgccctgttacag
ggtacgctaggtcctaaggggggtaaaagtggtgggcaaatagtgaactc
aggtatacgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_79542640_79543171
seq2: B6Ng01-179G13.b_46_576

seq1  GAATTCATACATATTCAATTCAATTCAACTCATTTCATCTTAAACGCGTT  50
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  GAATTCATACATATTCAATTCAATTCAACTCATTT-ATCTTTAACGCGTT  49

seq1  CTCACGACCAGCCAGGAAAGACGCAACAAACCGGAATCTTCTGCGGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGACCAGCCAGGAAAGACGCAACAAACCGGAATCTTCTGCGGCAAA  99

seq1  AGCTTTATTGCTTACATCTTCAGGAGCAAGAGCAAGAGAGCAAGAGACGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATTGCTTACATCTTCAGGAGCAAGAGCAAGAGAGCAAGAGACGA  149

seq1  AGAGAGAGAGTGCCAGAACCCCGTCCCTTTTAAGGAGAATTATCCTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGTGCCAGAACCCCGTCCCTTTTAAGGAGAATTATCCTCCAC  199

seq1  CTAGGACGTGTTACTCCCTGATTGGCTGCAGCCCATCGGCCCAGTTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACGTGTTACTCCCTGATTGGCTGCAGCCCATCGGCCCAGTTGTCA  249

seq1  TCACGGGAAAGGCAGAACACATGGCGGGAAAACTGCCCCTGCATGTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGGAAAGGCAGAACACATGGCGGGAAAACTGCCCCTGCATGTGTGC  299

seq1  AGATTTTGTTTACCACTTAGAACACAGCTGTCAGGACCATCTTATAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGTTTACCACTTAGAACACAGCTGTCAGGACCATCTTATAATGG  349

seq1  CAAATGTGAGGGCGGCTCCTCACAGATCCCCCTTTTCTTTTAATAAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTGAGGGCGGCTCCTCACAGATCCCCCTTTTCTTTTAATAAGAGC  399

seq1  AATAGGCCACCCATATTAATGAGAGTGGAGATAGAGGTCAAATCCCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCCACCCATATTAATGAGAGTGGAGATAGAGGTCAAATCCCCAGT  449

seq1  GTGCAGGTAAAGGAGCCGTACACATAACCTCCTCCCAGGCTCATCACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGTAAAGGAGCCGTACACATAACCTCCTCCCAGGCTCATCACCCA  499

seq1  GAGGGGTCCTGGTCTGGTCCCGTGTTGTTTTT  532
      ||||||||||||||||||||||||||||||||
seq2  GAGGGGTCCTGGTCTGGTCCCGTGTTGTTTTT  531