BAC Information

Click to search

BAC

Clone NameB6Ng01-179I08
Chromosome16 (Build37)
Map Location 56,618,268 - 56,761,779
singlet/doubletdoublet
Overlap geneAbi3bp, Tfg, Gpr128
Upstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835
Downstream geneTmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik, Col8a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179I08.bB6Ng01-179I08.g
ACCGA006218GA006219
length9631,244
definitionB6Ng01-179I08.b B6Ng01-179I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,760,818 - 56,761,779)(56,618,268 - 56,619,459)
sequence
gaattcttcatttcaaaaccacagatagaaatattagtgccaggtaccca
agtctgtatttctatgaaactctcgcagaagtgttccttacatttctgtg
ttgtaagaaggctcagtcacaaactctgcacttatttcctcatggtgtgg
cactcatggaaccttttatataactgggaaagttgtcatttagtggtaac
aattgcactaccatctctaggcccctcacagtcttgcatgtggcacgata
tcttgaaagagctgtattctagaagtctaatgaagcttttctctcccaac
aacactgccaatctggtgttccaaagaacatattttcatttatgcaaaca
tttatttgaccaaaatgtaggaaaagtgatactattatgtctgatacact
tgcaagaatctaaaaaacagagcagattttattcaattgcacagtttgct
aaaagtttatctccctggtagtgtgatgcttaataaataggagtgaggca
caagggttcagataagctagaagcagggtgacttggcatcaggactgtaa
actccagttggctgcgcactgttgaggaatgtgcaatgtttcaatgtgag
atgttaactgaagaagcaaatgtacaaaggcaaaaagatgtgcagcctac
agaacactccacatccagttctatcaggaggccttggacttgtatgagtg
tcattcccaaaggaattcaagtcttggaaaagtcaagcttccatttgttt
gttccctgaacaatggagacgaagttaagccaatttctttcttttttcca
aaaacaactttattaggtattttctttcatttacatttcaaatgctatcc
caaaagtcccctatattccttccccccctctgctccccaacccacccact
cccacttcctggccctggcattcccctgtactggggcatataatgttgaa
gaccaagggcctc
gaattcacatgttcatctttctttagtcctgaactcatacaatcccagta
accactttgctttctctagctccaaaaccaccaagaccaagaactcaccg
tcaacgtaccaaatacaaaaccacccaaagcccaaagatacctcatagta
aaccaggtaaatgtggttcttggctcaagtagttcttctccaggtagtaa
ttacacatgcaattatgggtgaaggccttaggaagccactaccaccagca
tggtgttctgtccaatccctaggcttcctatgctgtttccatgagcaatt
ccttgatacctgaattttttttttgttttcttcctctgacatttaattac
actttgctctttgatcataaattggaaaaacccatctatttagtttactt
gataaaacaccacattagcatctgtgagctatacactagaggtaacaagt
gacttagatgactaaaggaacaatgcccatgaatgaaagtaaaggataag
gagccccagcaagtagtcactgttttaccaactgttaggcaaataataag
ttcttcagtttaaaaaaaatgtatatatgggctaatacgtgtaacctgaa
acctttagcctttatagatttgccagcaagattgagcctgagtcctacag
agacaagaaggtgcctggtcttgggggagaggggacagacaatagaaaga
taggatctaggagtattgcctgactgagaagggtgatatttgcttagttg
aacaatgatgttattttcggaaggtccacaaagatctcagatgcccaaac
ttcaatgggctactttgagctcattgataatatccctgctactgtttcag
agccaggtcttttctgcctttggtaaattaagagatccaagttccatggg
atcgtccaggggctagatcttttttgctttttgctcaaaacataatttcc
ttcatcattttcctcaaagtagaactccttaacaaaatcaagccactgtt
taaattttcctttcagtaatagtgaaagtttattataaaactggtgtctc
ctttaaaaattatcaatatcatttttatcaatgacctcttagggattggt
ttttctaattatacagaacctcaaccataattgggctttcaacaattaaa
tttttcaaatgggtaattttaccataattggtttctcataagtgatctta
atcaatgttataacagttggtcctaagcagagaatgttttctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_56760818_56761779
seq2: B6Ng01-179I08.b_40_1002 (reverse)

seq1  GAGGCCCTTGGTCTTTCAAAGATTATATGCCCCAGTACAGGGGAATGCCA  50
      |||||||||||||||   || |||||||||||||||||||||||||||||
seq2  GAGGCCCTTGGTCTT--CAACATTATATGCCCCAGTACAGGGGAATGCCA  48

seq1  GGGCCAGGAAGTGGGAGTGGGTGGGTTGGGGAGCAGAGGGGGGGAAGG-A  99
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGGCCAGGAAGTGGGAGTGGGTGGGTTGGGGAGCAGAGGGGGGGAAGGAA  98

seq1  TATAGGGGACTTTTGGGATAGCATTTGAAATGTAAATG-AAGAAAATACC  148
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATAGGGGACTTTTGGGATAGCATTTGAAATGTAAATGAAAGAAAATACC  148

seq1  TAATAAAGTTGTTTTTGGAAAAAAGAAAGAAATTGGCTTAACTTCGTCTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGTTGTTTTTGGAAAAAAGAAAGAAATTGGCTTAACTTCGTCTC  198

seq1  CATTGTTCAGGGAAC-AACAAATGGAAGCTTGACTTTTCCAAGACTTGAA  247
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATTGTTCAGGGAACAAACAAATGGAAGCTTGACTTTTCCAAGACTTGAA  248

seq1  TTCCTTTGGGAATGACACTCATACAAGTCCAAGGCCTCCTGATAGAACTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGGGAATGACACTCATACAAGTCCAAGGCCTCCTGATAGAACTG  298

seq1  GATGTGGAGTGTTCTGTAGGCTGCACATCTTTTTGCCTTTGTACATTTGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGAGTGTTCTGTAGGCTGCACATCTTTTTGCCTTTGTACATTTGC  348

seq1  TTCTTCAGTTAACATCTCACATTGAAACATTGCACATTCCTCAACAGTGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGTTAACATCTCACATTGAAACATTGCACATTCCTCAACAGTGC  398

seq1  GCAGCCAACTGGAGTTTACAGTCCTGATGCCAAGTCACCCTGCTTCTAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAACTGGAGTTTACAGTCCTGATGCCAAGTCACCCTGCTTCTAGC  448

seq1  TTATCTGAACCCTTGTGCCTCACTCCTATTTATTAAGCATCACACTACCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGAACCCTTGTGCCTCACTCCTATTTATTAAGCATCACACTACCA  498

seq1  GGGAGATAAACTTTTAGCAAACTGTGCAATTGAATAAAATCTGCTCTGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATAAACTTTTAGCAAACTGTGCAATTGAATAAAATCTGCTCTGTT  548

seq1  TTTTAGATTCTTGCAAGTGTATCAGACATAATAGTATCACTTTTCCTACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGATTCTTGCAAGTGTATCAGACATAATAGTATCACTTTTCCTACA  598

seq1  TTTTGGTCAAATAAATGTTTGCATAAATGAAAATATGTTCTTTGGAACAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTCAAATAAATGTTTGCATAAATGAAAATATGTTCTTTGGAACAC  648

seq1  CAGATTGGCAGTGTTGTTGGGAGAGAAAAGCTTCATTAGACTTCTAGAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGGCAGTGTTGTTGGGAGAGAAAAGCTTCATTAGACTTCTAGAAT  698

seq1  ACAGCTCTTTCAAGATATCGTGCCACATGCAAGACTGTGAGGGGCCTAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTTTCAAGATATCGTGCCACATGCAAGACTGTGAGGGGCCTAGA  748

seq1  GATGGTAGTGCAATTGTTACCACTAAATGACAACTTTCCCAGTTATATAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTAGTGCAATTGTTACCACTAAATGACAACTTTCCCAGTTATATAA  798

seq1  AAGGTTCCATGAGTGCCACACCATGAGGAAATAAGTGCAGAGTTTGTGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCCATGAGTGCCACACCATGAGGAAATAAGTGCAGAGTTTGTGAC  848

seq1  TGAGCCTTCTTACAACACAGAAATGTAAGGAACACTTCTGCGAGAGTTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTTCTTACAACACAGAAATGTAAGGAACACTTCTGCGAGAGTTTC  898

seq1  ATAGAAATACAGACTTGGGTACCTGGCACTAATATTTCTATCTGTGGTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATACAGACTTGGGTACCTGGCACTAATATTTCTATCTGTGGTTT  948

seq1  TGAAATGAAGAATTC  962
      |||||||||||||||
seq2  TGAAATGAAGAATTC  963

seq1: chr16_56618268_56619459
seq2: B6Ng01-179I08.g_68_1311

seq1  GAATTCACATGTTCATCTTTCTTTAGTCCTGAACTCATACAATCCCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGTTCATCTTTCTTTAGTCCTGAACTCATACAATCCCAGTA  50

seq1  ACCACTTTGCTTTCTCTAGCTCCAAAACCACCAAGACCAAGAACTCACCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTTGCTTTCTCTAGCTCCAAAACCACCAAGACCAAGAACTCACCG  100

seq1  TCAACGTACCAAATACAAAACCACCCAAAGCCCAAAGATACCTCATAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGTACCAAATACAAAACCACCCAAAGCCCAAAGATACCTCATAGTA  150

seq1  AACCAGGTAAATGTGGTTCTTGGCTCAAGTAGTTCTTCTCCAGGTAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGTAAATGTGGTTCTTGGCTCAAGTAGTTCTTCTCCAGGTAGTAA  200

seq1  TTACACATGCAATTATGGGTGAAGGCCTTAGGAAGCAGCTACCACCAGCA  250
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  TTACACATGCAATTATGGGTGAAGGCCTTAGGAAGCCACTACCACCAGCA  250

seq1  TGGTGTTCTGTCCAATCCCTAGGCTTCCTATGCTGTTTCCATGAGCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCTGTCCAATCCCTAGGCTTCCTATGCTGTTTCCATGAGCAATT  300

seq1  CCTTGATACCTGAATTTTTTTTTTGTTTTCTTCCTCTGACATTTAATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATACCTGAATTTTTTTTTTGTTTTCTTCCTCTGACATTTAATTAC  350

seq1  ACTTTGCTCTTTGATCATAAATTGGAAAAACCCATCTATTTAGTTTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTCTTTGATCATAAATTGGAAAAACCCATCTATTTAGTTTACTT  400

seq1  GATAAAACACCACATTAGCATCTGTGAGCTATACACTAGAGGTAACAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAACACCACATTAGCATCTGTGAGCTATACACTAGAGGTAACAAGT  450

seq1  GACTTAGATGACTAAAGGAACAATGCCCATGAATGAAAGTAAAGGATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGATGACTAAAGGAACAATGCCCATGAATGAAAGTAAAGGATAAG  500

seq1  GAGCCCCAGCAAGTAGTCACTGTTTTACCAACTGTTAGGCAAATAATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCAGCAAGTAGTCACTGTTTTACCAACTGTTAGGCAAATAATAAG  550

seq1  TTCTTCAGTTTAAAAAAAATGTATATATGGGCTAATACGTGTAACCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGTTTAAAAAAAATGTATATATGGGCTAATACGTGTAACCTGAA  600

seq1  ACCTTTAGCCTTTATAGATTTGCCAGCAAGATTGAGCCTGAGTCCTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAGCCTTTATAGATTTGCCAGCAAGATTGAGCCTGAGTCCTACAG  650

seq1  AGACAAGAAGGTGCCTGGTCTTGGGGGAGAGGGGACAGACAATAGAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGAAGGTGCCTGGTCTTGGGGGAGAGGGGACAGACAATAGAAAGA  700

seq1  TAGGATCTAGGAGTATTGCCTGACTGAGAAGGGTGATATTTGCTTAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCTAGGAGTATTGCCTGACTGAGAAGGGTGATATTTGCTTAGTTG  750

seq1  AACAATGATGTTATTTTCGGAAGGTCCACAAAGATCTCAGATGCCC-AAC  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AACAATGATGTTATTTTCGGAAGGTCCACAAAGATCTCAGATGCCCAAAC  800

seq1  TTCAAT-GGCTACTTTGAGCTCATTGAT-ATAT-CCTGCTACTG-TTCAG  845
      |||||| ||||||||||||||||||||| |||| |||||||||| |||||
seq2  TTCAATGGGCTACTTTGAGCTCATTGATAATATCCCTGCTACTGTTTCAG  850

seq1  AGCCAGGTCTTTTCTGCC-TTGGT-AATTAAGAGATCCAAGTTCCAT-GG  892
      |||||||||||||||||| ||||| |||||||||||||||||||||| ||
seq2  AGCCAGGTCTTTTCTGCCTTTGGTAAATTAAGAGATCCAAGTTCCATGGG  900

seq1  ATCGTCCA-GGGCTAGATCTTTTTTGC-TTTTGCTC-AAACATAATT--C  937
      |||||||| |||||||||||||||||| |||||||| ||||||||||  |
seq2  ATCGTCCAGGGGCTAGATCTTTTTTGCTTTTTGCTCAAAACATAATTTCC  950

seq1  TTCATCATTTT-CTCAAAGTAG-ACT-CTTAACAAAATCAAG-CACTGTT  983
      ||||||||||| |||||||||| ||| ||||||||||||||| |||||||
seq2  TTCATCATTTTCCTCAAAGTAGAACTCCTTAACAAAATCAAGCCACTGTT  1000

seq1  T-AATTTTCC-TTCAGT-ATAGTGAA--GTTAATAT-AAACT-GTGTCTC  1026
      | |||||||| |||||| ||||||||   ||| ||| ||||| |||||||
seq2  TAAATTTTCCTTTCAGTAATAGTGAAAGTTTATTATAAAACTGGTGTCTC  1050

seq1  CTT--AAATATATCAATAATCATATTTATC-ATGA-CTCT--AGGATTTG  1070
      |||  |||  ||||||| ||||| |||||| |||| ||||   ||||| |
seq2  CTTTAAAAATTATCAAT-ATCATTTTTATCAATGACCTCTTAGGGATTGG  1099

seq1  -TTTTCT-ATTATACAGA--CTC-ACCATAATT-GGCTTTC-ACA--TTA  1111
       |||||| ||||||||||  ||| ||||||||| ||||||| |||  | |
seq2  TTTTTCTAATTATACAGAACCTCAACCATAATTGGGCTTTCAACAATTAA  1149

seq1  ATTTTTCAAATTGTTA--TTTATCATAATTG--TTCTCATA--TGATCTT  1155
      ||||||||||| | ||  |||| ||||||||  ||||||||  |||||||
seq2  ATTTTTCAAATGGGTAATTTTACCATAATTGGTTTCTCATAAGTGATCTT  1199

seq1  ATTC-ATG-TATAACATTTG--TCTAAGCAGA----GTTTTCTAT  1192
      | || ||| ||||||| |||   |||||||||    |||||||||
seq2  AATCAATGTTATAACAGTTGGTCCTAAGCAGAGAATGTTTTCTAT  1244