BAC Information

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BAC

Clone NameB6Ng01-181E21
Chromosome16 (Build37)
Map Location 9,019,290 - 9,140,833
singlet/doubletdoublet
Overlap genenone
Upstream gene4930511J11Rik, BC024814, Abat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
Downstream geneGrin2a, LOC665291, LOC100042534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181E21.bB6Ng01-181E21.g
ACCGA007502GA007503
length9081,116
definitionB6Ng01-181E21.b B6Ng01-181E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,019,290 - 9,020,195)(9,139,702 - 9,140,833)
sequence
atctgtggagaacacattcagaggtctgtttagtaaaatgacttgatgta
atgaagcctgcattagatcaattctcactgaaatgagctgggatttgatt
tttgcccctcccccacgtaactttcaatttaatgatgaattgtgggagtc
atcagcctgctgacatttcgatgctgggcacagcaggcaacagctttcct
gcttgctggtccttctgactggagctcttgaaaggcatttttgtattttt
ttttaaaggggaaaatttttgttaaagacctttttccttgttccagtgag
aatgccattttaacatttccatttggttgtttttagatgttctcttgggt
caccagtgtgaatattaatgatggtgtgcaatgcacacacaaataaatga
tttgtgtggttgcaggcaaacatttctgtgtgttttctcctccccatctt
tagaaggactggattgggtctaaagtgctgcagatcactcaaagatatta
agaaaaaaggatacaggaagggctgggcacactggctcagacctgtaatc
gcagttcccaggagacagaagcagaaagatcaggagttcagaacactcca
gaggaggttggttcatgttagtgtgcaattgtttgactctgtaacttggt
gctcagatacatgtgtgatttggagacaaaatgtagggagtggagatttt
tttgcacttttaagatattcacactgacccttggccccaaaacatccctg
ctggctctggagacagtcgcttacatttacagcttgactacagtgaagtg
tctctttacttgctggacacacgtgtccaaagctctgtggatgcctgaaa
tcacagatggcactgcacccggatagaggctgtgtttttttcgtctgtgc
attcctgt

gaattctagacattgcagctgaccaggaagcagagaggccagagtgacct
gcatactccagagaggtcctcccacctaaagtttccagagtatcccagaa
cagcctcatctcctggggagcaggcattaaaaccatcagcctgcagagga
cattatgtctccagaaactaataagcttgcaatctcccattgcatggaac
ttcttagctgccataaagaagaaagttgtattatttttaggaaaatggat
acaactcagactcattcatgttaaattagttaacccagccttaaaaaaaa
aaaacaaataaatatggtttcctcatttgtagtttctgaattctatgtgg
atacaggaaatcatacatacacatatacgcacgcacacactcacgcacgc
acacactcacgcacgcatacactcactcacgcacatgcacatgaccatgg
aagcaggccccaaactgtctacagggataaaggcagagaggcagtaaaaa
tgaggatggggggcatggagctaaatatgttcaatgcataatatatactt
aggtgaaaactacaaaataaatcattaaaatgtctcccattgagctaaag
agaggcccggctagtaaaatgcaataaagatattacatagtgtgaagtcc
tgagttcagtccccaggacttggataaaacagcttggcagagtggcagtg
gctcccaactctagcagattgttagtatacagtgttagtatacagctagt
atacagctcggctctgggaagacagatacatgaagatccctggagctcac
aggccagcaagcctagccttagctggtataagctctaggccgaagagaga
agtggccaaaaattaatttaaaagcgtaaaagataaaaccaaggtagttg
ggttcctgataaatgacgcccaagtttgatccatttgtggagagagagat
tctccagttataaatggaaaatgctaacactctggagaagccagacagct
ctgatcccagtcatgatatttacatagtactaaatgacatcagagaaaaa
tacctggtcctgcacacagctatcccagaaactagtgctgcccaggccca
accactagcttcagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_9019290_9020195
seq2: B6Ng01-181E21.b_56_963

seq1  ATCTGTGGAGAACACATTCAGAGGTCTGTTTAGTAAAATGACTTGATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGAGAACACATTCAGAGGTCTGTTTAGTAAAATGACTTGATGTA  50

seq1  ATGAAGCCTGCATTAGATCAATTCTCACTGAAATGAGCTGGGATTTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCCTGCATTAGATCAATTCTCACTGAAATGAGCTGGGATTTGATT  100

seq1  TTTGCCCCTCCCCCACGTAACTTTCAATTTAATGATGAATTGTGGGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCCTCCCCCACGTAACTTTCAATTTAATGATGAATTGTGGGAGTC  150

seq1  ATCAGCCTGCTGACATTTCGATGCTGGGCACAGCAGGCAACAGCTTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCTGCTGACATTTCGATGCTGGGCACAGCAGGCAACAGCTTTCCT  200

seq1  GCTTGCTGGTCCTTCTGACTGGAGCTCTTGAAAGGCATTTTTGTATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGGTCCTTCTGACTGGAGCTCTTGAAAGGCATTTTTGTATTTTT  250

seq1  TTTTAAAGGGGAAAATTTTTGTTAAAGACCTTTTTCCTTGTTCCAGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGGGGAAAATTTTTGTTAAAGACCTTTTTCCTTGTTCCAGTGAG  300

seq1  AATGCCATTTTAACATTTCCATTTGGTTGTTTTTAGATGTTCTCTTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATTTTAACATTTCCATTTGGTTGTTTTTAGATGTTCTCTTGGGT  350

seq1  CACCAGTGTGAATATTAATGATGGTGTGCAATGCACACACAAATAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTGTGAATATTAATGATGGTGTGCAATGCACACACAAATAAATGA  400

seq1  TTTGTGTGGTTGCAGGCAAACATTTCTGTGTGTTTTCTCCTCCCCATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGGTTGCAGGCAAACATTTCTGTGTGTTTTCTCCTCCCCATCTT  450

seq1  TAGAAGGACTGGATTGGGTCTAAAGTGCTGCAGATCACTCAAAGATATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGACTGGATTGGGTCTAAAGTGCTGCAGATCACTCAAAGATATTA  500

seq1  AGAAAAAAGGATACAGGAAGGGCTGGGCACACTGGCTCAGACCTGTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAGGATACAGGAAGGGCTGGGCACACTGGCTCAGACCTGTAATC  550

seq1  GCAGTTCCCAGGAGACAGAAGCAGAAAGATCAGGAGTTCAGAACACTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCCCAGGAGACAGAAGCAGAAAGATCAGGAGTTCAGAACACTCCA  600

seq1  GAGGAGGTTGGTTCATGTTAGTGTGCAATTGTTTGACTCTGTAACTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGTTGGTTCATGTTAGTGTGCAATTGTTTGACTCTGTAACTTGGT  650

seq1  GCTCAGATACATGTGTGATTTGGAGACAAAATGTAGGGAGTGGAGATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGATACATGTGTGATTTGGAGACAAAATGTAGGGAGTGGAGATTTT  700

seq1  TTTGCACTTTTAAGATATTCACACTGACCCTTGGCCCCAAAACATCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACTTTTAAGATATTCACACTGACCCTTGGCCCCAAAACATCCCTG  750

seq1  CTGGCTCTGGAGACAGTCGCTTACATTTACAGCTTGACTACAGTGAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTGGAGACAGTCGCTTACATTTACAGCTTGACTACAGTGAAGTG  800

seq1  TCTC-TTACTTGCTGGACACACGTGTCCAAAGCTCTGTGGATGCCTGAAA  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTACTTGCTGGACACACGTGTCCAAAGCTCTGTGGATGCCTGAAA  850

seq1  TCACAGATGGCACTGCA-CCTGATAGAGGCTGTGTTTTTTCTGTCTGTGC  898
      ||||||||||||||||| || |||||||||||||||||||  ||||||||
seq2  TCACAGATGGCACTGCACCCGGATAGAGGCTGTGTTTTTTTCGTCTGTGC  900

seq1  ATTCCTGT  906
      ||||||||
seq2  ATTCCTGT  908


seq1: chr16_9139702_9140833
seq2: B6Ng01-181E21.g_64_1179 (reverse)

seq1  GACTGAGAGCTAGTGGGTGGGGCAGGGGCAGCACTAGTTTCTGGGATAGG  50
      |||||| ||||||| ||| ||||  ||||||||||||||||||||||| |
seq2  GACTGA-AGCTAGT-GGTTGGGCCTGGGCAGCACTAGTTTCTGGGATA-G  47

seq1  CTGGTGTTGCAAGACCCAGGTATTTTTCTCCCTGATGTCATTTAGTTACT  100
      || ||| |||| || ||||||||||||||  |||||||||||||| ||| 
seq2  CT-GTG-TGCAGGA-CCAGGTATTTTTCT--CTGATGTCATTTAG-TAC-  90

seq1  TATGTAAATTATCATGGAACTGGGATCAGAAGCTGTCTTGGCTTCTCCAG  150
      |||||||| |||||||  ||||||||||| ||||||| ||||||||||||
seq2  TATGTAAA-TATCATG--ACTGGGATCAG-AGCTGTC-TGGCTTCTCCAG  135

seq1  AGTGTTAGCATTTTCCATTTTATAACTGGAGAATCTCTCTTCTCCACAAA  200
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  AGTGTTAGCATTTTCCA-TTTATAACTGGAGAATCTCTC-TCTCCACAAA  183

seq1  TGGATCAACCTTGGGCGTCATTTATCAGGAA-CCAACTACCTTGGTTTTA  249
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  TGGATCAAACTTGGGCGTCATTTATCAGGAACCCAACTACCTTGGTTTTA  233

seq1  TCTTTTACGCTTTTAAATTAATTTTTGGCCACTTCTCTCTTCGGCCTAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACGCTTTTAAATTAATTTTTGGCCACTTCTCTCTTCGGCCTAGA  283

seq1  GCTTATACCAGCTAAGGCTAGGCTTGCTGGCCTGTGAGCTCCAGGGATCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATACCAGCTAAGGCTAGGCTTGCTGGCCTGTGAGCTCCAGGGATCT  333

seq1  TCATGTATCTGTCTTCCCAGAGCCGAGCTGTATACTAGCTGTATACTAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTATCTGTCTTCCCAGAGCCGAGCTGTATACTAGCTGTATACTAAC  383

seq1  ACTGTATACTAACAATCTGCTAGAGTTGGGAGCCACTGCCACTCTGCCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATACTAACAATCTGCTAGAGTTGGGAGCCACTGCCACTCTGCCAA  433

seq1  GCTGTTTTATCCAAGTCCTGGGGACTGAACTCAGGACTTCACACTATGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTATCCAAGTCCTGGGGACTGAACTCAGGACTTCACACTATGTA  483

seq1  ATATCTTTATTGCATTTTACTAGCCGGGCCTCTCTTTAGCTCAATGGGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTATTGCATTTTACTAGCCGGGCCTCTCTTTAGCTCAATGGGAG  533

seq1  ACATTTTAATGATTTATTTTGTAGTTTTCACCTAAGTATATATTATGCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAATGATTTATTTTGTAGTTTTCACCTAAGTATATATTATGCAT  583

seq1  TGAACATATTTAGCTCCATGCCCCCCATCCTCATTTTTACTGCCTCTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATATTTAGCTCCATGCCCCCCATCCTCATTTTTACTGCCTCTCTG  633

seq1  CCTTTATCCCTGTAGACAGTTTGGGGCCTGCTTCCATGGTCATGTGCATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATCCCTGTAGACAGTTTGGGGCCTGCTTCCATGGTCATGTGCATG  683

seq1  TGCGTGAGTGAGTGTATGCGTGCGTGAGTGTGTGCGTGCGTGAGTGTGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGAGTGAGTGTATGCGTGCGTGAGTGTGTGCGTGCGTGAGTGTGTG  733

seq1  CGTGCGTATATGTGTATGTATGATTTCCTGTATCCACATAGAATTCAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCGTATATGTGTATGTATGATTTCCTGTATCCACATAGAATTCAGAA  783

seq1  ACTACAAATGAGGAAACCATATTTATTTGTTTTTTTTTTTTAAGGCTGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAATGAGGAAACCATATTTATTTGTTTTTTTTTTTTAAGGCTGGG  833

seq1  TTAACTAATTTAACATGAATGAGTCTGAGTTGTATCCATTTTCCTAAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAATTTAACATGAATGAGTCTGAGTTGTATCCATTTTCCTAAAAA  883

seq1  TAATACAACTTTCTTCTTTATGGCAGCTAAGAAGTTCCATGCAATGGGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAACTTTCTTCTTTATGGCAGCTAAGAAGTTCCATGCAATGGGAG  933

seq1  ATTGCAAGCTTATTAGTTTCTGGAGACATAATGTCCTCTGCAGGCTGATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAGCTTATTAGTTTCTGGAGACATAATGTCCTCTGCAGGCTGATG  983

seq1  GTTTTAATGCCTGCTCCCCAGGAGATGAGGCTGTTCTGGGATACTCTGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATGCCTGCTCCCCAGGAGATGAGGCTGTTCTGGGATACTCTGGA  1033

seq1  AACTTTAGGTGGGAGGACCTCTCTGGAGTATGCAGGTCACTCTGGCCTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAGGTGGGAGGACCTCTCTGGAGTATGCAGGTCACTCTGGCCTCT  1083

seq1  CTGCTTCCTGGTCAGCTGCAATGTCTAGAATTC  1132
      |||||||||||||||||||||||||||||||||
seq2  CTGCTTCCTGGTCAGCTGCAATGTCTAGAATTC  1116


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