BAC Information

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BAC

Clone NameB6Ng01-181N06
Chromosome16 (Build37)
Map Location 29,640,584 - 29,797,416
singlet/doubletdoublet
Overlap geneOpa1
Upstream geneFgf12, 1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4
Downstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181N06.bB6Ng01-181N06.g
ACCGA007882GA007883
length759193
definitionB6Ng01-181N06.b B6Ng01-181N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,796,666 - 29,797,416)(29,640,584 - 29,640,776)
sequence
gaattcactgttactatgcaaaaggaaccctgatgtagctgatagaccag
ggtgtaaagccgggagacctgctttggcatctttagtcctctcaacatct
gtgtggctccaggccagtgaatctctctcttctattaggtcaaatagtga
gaagattcattttgtacctatgaactttagggctacggagaggagcaaat
gagttaaaggaaagtgcttgtggcttctgaagtttctcgggactaggttg
taccatccagccctctgattgaataaagctgataacaaattatggagaag
gtaagaaacaacacgagaccacccagtagggctctcaggcaggtgatgat
gctacttcacttgtaccagggatgtttagacagcctaggccacaccaggg
tcaaaagcttcaagggtaagcgtttggtgatctagctggagccctaatta
cccagtggcatatcacctcacgtttaattttattttgtgatgataaaaac
tacatacagtggtcatgtgacacttggcaaatacaaaaggcgcagagaag
gaaaggtagaggtttttatggctctgttgtgtgtatagatctatgctgta
tagtctgttgtctagccttcctctgtgtatgcacactcgcatgtgtgtga
gtgtgtgtgtgtatttgaaatataattgtaacagtgatcccttttcttac
tcaagtttttttgtgcatggctagcaatctaaactttgtggaagtagaat
tcaccactt
ctatcccctttctgagacagaattaaggttgctttgctttgtttttaatc
ttttatctcctccgttttgcacaacttcttactctgagccgtgtatacag
ctctctctgtctttaaacaaattctagcgagtatactaccaggaattcgg
ttctcagttttttaagtattttattattatgggggtggtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_29796666_29797416
seq2: B6Ng01-181N06.b_48_806 (reverse)

seq1  AAGT-GTGAATTCTACTT-CACAA--GTTAGATTGCTAG-CATGCAC-AA  44
      |||| ||||||||||||| |||||   |||||||||||| ||||||| ||
seq2  AAGTGGTGAATTCTACTTCCACAAAGTTTAGATTGCTAGCCATGCACAAA  50

seq1  AAAACTTGAGTAAG-AAAGGGATCACTGTTACAATTATA-TTCAAATACA  92
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  AAAACTTGAGTAAGAAAAGGGATCACTGTTACAATTATATTTCAAATACA  100

seq1  CACACACACTCACACACATGCGAGTGTGCATACACAGAGGAAGGCTAGAC  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACTCACACACATGCGAGTGTGCATACACAGAGGAAGGCTAGAC  150

seq1  AACAGACTATACAGCATAGATCTATACACACAACAGAGCCATAAAAACCT  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACTATACAGCATAGATCTATACACACAACAGAGCCATAAAAACCT  200

seq1  CTACCTTTCCTTCTCTGCGCCTTTTGTATTTGCCAAGTGTCACATGACCA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTCCTTCTCTGCGCCTTTTGTATTTGCCAAGTGTCACATGACCA  250

seq1  CTGTATGTAGTTTTTATCATCACAAAATAAAATTAAACGTGAGGTGATAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGTAGTTTTTATCATCACAAAATAAAATTAAACGTGAGGTGATAT  300

seq1  GCCACTGGGTAATTAGGGCTCCAGCTAGATCACCAAACGCTTACCCTTGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGGGTAATTAGGGCTCCAGCTAGATCACCAAACGCTTACCCTTGA  350

seq1  AGCTTTTGACCCTGGTGTGGCCTAGGCTGTCTAAACATCCCTGGTACAAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGACCCTGGTGTGGCCTAGGCTGTCTAAACATCCCTGGTACAAG  400

seq1  TGAAGTAGCATCATCACCTGCCTGAGAGCCCTACTGGGTGGTCTCGTGTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAGCATCATCACCTGCCTGAGAGCCCTACTGGGTGGTCTCGTGTT  450

seq1  GTTTCTTACCTTCTCCATAATTTGTTATCAGCTTTATTCAATCAGAGGGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTACCTTCTCCATAATTTGTTATCAGCTTTATTCAATCAGAGGGC  500

seq1  TGGATGGTACAACCTAGTCCCGAGAAACTTCAGAAGCCACAAGCACTTTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGTACAACCTAGTCCCGAGAAACTTCAGAAGCCACAAGCACTTTC  550

seq1  CTTTAACTCATTTGCTCCTCTCCGTAGCCCTAAAGTTCATAGGTACAAAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTCATTTGCTCCTCTCCGTAGCCCTAAAGTTCATAGGTACAAAA  600

seq1  TGAATCTTCTCACTATTTGACCTAATAGAAGAGAGAGATTCACTGGCCTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTCTCACTATTTGACCTAATAGAAGAGAGAGATTCACTGGCCTG  650

seq1  GAGCCACACAGATGTTGAGAGGACTAAAGATGCCAAAGCAGGTCTCCCGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACACAGATGTTGAGAGGACTAAAGATGCCAAAGCAGGTCTCCCGG  700

seq1  CTTTACACCCTGGTCTATCAGCTACATCAGGGTTCCTTTTGCATAGTAAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACACCCTGGTCTATCAGCTACATCAGGGTTCCTTTTGCATAGTAAC  750

seq1  AGTGAATTC  751
      |||||||||
seq2  AGTGAATTC  759

seq1: chr16_29640584_29640776
seq2: B6Ng01-181N06.g_73_265

seq1  CTATCCCCTTTCTGAGACAGAATTAAGGTTGCTTTGCTTTGTTTTTAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCCTTTCTGAGACAGAATTAAGGTTGCTTTGCTTTGTTTTTAATC  50

seq1  TTTTATCTCCTCCGTTTTGCACAACTTCTTACTCTGAGCCGTGTATACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTCCTCCGTTTTGCACAACTTCTTACTCTGAGCCGTGTATACAG  100

seq1  CTCTCTCTGTCTTTAAACAAATTCTAGCGAGTATACTACCAGGAATTCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGTCTTTAAACAAATTCTAGCGAGTATACTACCAGGAATTCGG  150

seq1  TTCTCAGTTTTTTAAGTATTTTATTATTATGGGGGTGGTGTGG  193
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTTTTTTAAGTATTTTATTATTATGGGGGTGGTGTGG  193