BAC Information

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BAC

Clone NameB6Ng01-182A02
Chromosome16 (Build37)
Map Location 90,021,635 - 90,154,373
singlet/doubletdoublet
Overlap geneLOC100040496, LOC640694
Upstream geneKrtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
Downstream geneLOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182A02.bB6Ng01-182A02.g
ACCGA008014GA008015
length4231,033
definitionB6Ng01-182A02.b B6Ng01-182A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,153,945 - 90,154,373)(90,021,635 - 90,022,665)
sequence
agtgtgtaaatggccttgaactcacaggtccaccttcctctgcctgctga
acctgtggggtacaggcctttccccctagcctggcttctcacagactaag
gaagaaacatctagacatccagatgatacattctttcttctcttcaaaaa
gaaaagttcctgaggagagaccctttgttgatgacaataaataatagcca
aaaacttaatttaggccaacaagtcgtttctttcctgagaaaatggatac
aaacacaagggaatgactgctggttttcaagatgggtttctctatacaac
agtggtggctgtcctggaactcactctgtggccttgacctcacagccatc
tgcctgcctctgtctccccaatgctgagatccacgccccgccttggtaga
tagggtgaggtgtagtgtattgg
gaattctttgcgtggataaaggtggctgtggagaacgcgtttgccagctg
cttctgagaccgcagagagggagccgacaatgctctgactgccctgctct
gctgaagcacagacgcagcttgggaaataaaggaacgaatgctgtcacgg
gacaggaaacggtgtttccaaagcaaggtggatccagccggcagctttgc
caagcactggattcgggtataaacacagctgtccctccatttctgtggag
gagagagattcgctctagaactgtctccatatctgtggaggagagaggtt
cgctctagaaccgtctccatttctgtggaggagagaatgtacgtggttct
agaaccgtcctggaacatcaaaagtcaaggaggctctcgttctcatggaa
cggcagactatctgtccacattctctactcacccccagcccctgtacact
ttgaattctctctagatcatttttgcacctaatacaatgcgcgcacataa
acagcagccacactgtactgctcaggaaacaatgacaaggaaaacttttg
aacatgctcagtacagaggaaattaatttcttttcaaaattattgacaca
cacagctggacaagcagtgcacacttctaattgcagcactcagggagggg
gtagccgtatctctgtgagttcaaggtcagcctggtctgtgtggtgaatt
tcaggacagccaagaatacagggtgagaccctcttttaaaaatcataata
attaaattcaatttaaccatgcacacatacactgagtcaggtgggttttg
ctccatgctggtgcacgtggagagcagattctctgtgatgccagcaaggc
tggacagcaggaggaagtaacttcatctgtgccttgaaaaggttaagagg
agacccagcttagaccgcctcagcaaagaaaagccactggtcacaaactg
ggcgatctgagtctaagccctggacccagaggttgaaaagcagagctgat
ccctacaggctacccacttgatgacctgtgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90153945_90154373
seq2: B6Ng01-182A02.b_30_458 (reverse)

seq1  CCAATACACTACACCTCACCCTATCTACCAAGGCGGGGCGTGGATCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATACACTACACCTCACCCTATCTACCAAGGCGGGGCGTGGATCTCAG  50

seq1  CATTGGGGAGACAGAGGCAGGCAGATGGCTGTGAGGTCAAGGCCACAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGGAGACAGAGGCAGGCAGATGGCTGTGAGGTCAAGGCCACAGAG  100

seq1  TGAGTTCCAGGACAGCCACCACTGTTGTATAGAGAAACCCATCTTGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGGACAGCCACCACTGTTGTATAGAGAAACCCATCTTGAAAA  150

seq1  CCAGCAGTCATTCCCTTGTGTTTGTATCCATTTTCTCAGGAAAGAAACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGTCATTCCCTTGTGTTTGTATCCATTTTCTCAGGAAAGAAACGA  200

seq1  CTTGTTGGCCTAAATTAAGTTTTTGGCTATTATTTATTGTCATCAACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGGCCTAAATTAAGTTTTTGGCTATTATTTATTGTCATCAACAAA  250

seq1  GGGTCTCTCCTCAGGAACTTTTCTTTTTGAAGAGAAGAAAGAATGTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTCCTCAGGAACTTTTCTTTTTGAAGAGAAGAAAGAATGTATCA  300

seq1  TCTGGATGTCTAGATGTTTCTTCCTTAGTCTGTGAGAAGCCAGGCTAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATGTCTAGATGTTTCTTCCTTAGTCTGTGAGAAGCCAGGCTAGGG  350

seq1  GGAAAGGCCTGTACCCCACAGGTTCAGCAGGCAGAGGAAGGTGGACCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGCCTGTACCCCACAGGTTCAGCAGGCAGAGGAAGGTGGACCTGT  400

seq1  GAGTTCAAGGCCATTTACACACTGAATTC  429
      |||||||||||||||||||||||||||||
seq2  GAGTTCAAGGCCATTTACACACTGAATTC  429

seq1: chr16_90021635_90022665
seq2: B6Ng01-182A02.g_62_1094

seq1  GAATTCTTTGCGTGGATAAAGGTGGCTGTGGAGAACGCGTTTGCCAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCGTGGATAAAGGTGGCTGTGGAGAACGCGTTTGCCAGCTG  50

seq1  CTTCTGAGACCGCAGAGAGGGAGCCGACAATGCTCTGACTGCCCTGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGACCGCAGAGAGGGAGCCGACAATGCTCTGACTGCCCTGCTCT  100

seq1  GCTGAAGCACAGACGCAGCTTGGGAAATAAAGGAACGAATGCTGTCACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCACAGACGCAGCTTGGGAAATAAAGGAACGAATGCTGTCACGG  150

seq1  GACAGGAAACGGTGTTTCCAAAGCAAGGTGGATCCAGCCGGCAGCTTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAAACGGTGTTTCCAAAGCAAGGTGGATCCAGCCGGCAGCTTTGC  200

seq1  CAAGCACTGGATTCGGGTATAAACACAGCTGTCCCTCCATTTCTGTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTGGATTCGGGTATAAACACAGCTGTCCCTCCATTTCTGTGGAG  250

seq1  GAGAGAGATTCGCTCTAGAACTGTCTCCATATCTGTGGAGGAGAGAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGATTCGCTCTAGAACTGTCTCCATATCTGTGGAGGAGAGAGGTT  300

seq1  CGCTCTAGAACCGTCTCCATTTCTGTGGAGGAGAGAATGTACGTGGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTAGAACCGTCTCCATTTCTGTGGAGGAGAGAATGTACGTGGTTCT  350

seq1  AGAACCGTCCTGGAACATCAAAAGTCAAGGAGGCTCTCGTTCTCATGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCGTCCTGGAACATCAAAAGTCAAGGAGGCTCTCGTTCTCATGGAA  400

seq1  CGGCAGACTATCTGTCCACATTCTCTACTCACCCCCAGCCCCTGTACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGACTATCTGTCCACATTCTCTACTCACCCCCAGCCCCTGTACACT  450

seq1  TTGAATTCTCTCTAGATCATTTTTGCACCTAATACAATGCGCGCACATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCTCTCTAGATCATTTTTGCACCTAATACAATGCGCGCACATAA  500

seq1  ACAGCAGCCACACTGTACTGCTCAGGAAACAATGACAAGGAAAACTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCCACACTGTACTGCTCAGGAAACAATGACAAGGAAAACTTTTG  550

seq1  AACATGCTCAGTACAGAGGAAATTAATTTCTTTTCAAAATTATTGACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCTCAGTACAGAGGAAATTAATTTCTTTTCAAAATTATTGACACA  600

seq1  CACAGCTGGACAAGCAGTGCACACTTCTAATTGCAGCACTCAGGGAGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGGACAAGCAGTGCACACTTCTAATTGCAGCACTCAGGGAGGGG  650

seq1  GTAGCCGTATCTCTGTGAGTTCAAGGTCAGCCTGGTCTGTGTGGTGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCGTATCTCTGTGAGTTCAAGGTCAGCCTGGTCTGTGTGGTGAATT  700

seq1  TCAGGACAGCCAAGAATACAGGGTGAGACCCTCTTTTTAAAAATCATAAT  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCAGGACAGCCAAGAATACAGGGTGAGACCCTC-TTTTAAAAATCATAAT  749

seq1  AATTAAATTCAATTTAACCATGCACACATACACTGAGTCAGGTGGG-TTT  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATTAAATTCAATTTAACCATGCACACATACACTGAGTCAGGTGGGTTTT  799

seq1  GCTCCATGCTGGTGCACGTGGAGAGCAGATTCTCTGTGATGCCAGCAAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATGCTGGTGCACGTGGAGAGCAGATTCTCTGTGATGCCAGCAAGG  849

seq1  CTGGACAGCAGGAGGAAGTAACTTCATCTGTGCCTTGAAAAGGTTAAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAGCAGGAGGAAGTAACTTCATCTGTGCCTTGAAAAGGTTAAGAG  899

seq1  GAGACCCAGC-TAGA-CGGCTCAGC-AAGAAAAGCCACTGGCCACCAAAC  946
      |||||||||| |||| || |||||| ||||||||||||||| || |||||
seq2  GAGACCCAGCTTAGACCGCCTCAGCAAAGAAAAGCCACTGGTCA-CAAAC  948

seq1  TGGGCGATCTGAGTCTAAGCCCTGGAACCCAGAGGGTGGAAAAGCAGAGC  996
      ||||||||||||||||||||||||| ||||||| ||| ||||||||||||
seq2  TGGGCGATCTGAGTCTAAGCCCTGG-ACCCAGA-GGTTGAAAAGCAGAGC  996

seq1  TGATCCC-ACAAGCTACCCAC-TGATGACCTGTGTCA  1031
      ||||||| ||| ||||||||| |||||||||||||||
seq2  TGATCCCTACAGGCTACCCACTTGATGACCTGTGTCA  1033